Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR4719-201ENST00000585233 84 ntBASIC-3.05□□□□□ -2.9
CCDC88AQ3V6T2 RNU6-530P-201ENST00000391180 107 ntBASIC-3.06□□□□□ -2.9
CCDC88AQ3V6T2 TMSB4XP3-201ENST00000445144 114 ntBASIC-3.06□□□□□ -2.9
CCDC88AQ3V6T2 MIR4484-201ENST00000582855 83 ntBASIC-3.06□□□□□ -2.9
CCDC88AQ3V6T2 Y_RNA.17-201ENST00000362433 111 ntBASIC-3.07□□□□□ -2.9
CCDC88AQ3V6T2 RNU6-1324P-201ENST00000384222 107 ntBASIC-3.07□□□□□ -2.9
CCDC88AQ3V6T2 RNU6-844P-201ENST00000517175 102 ntBASIC-3.07□□□□□ -2.9
CCDC88AQ3V6T2 RNU6-141P-201ENST00000410499 105 ntBASIC-3.08□□□□□ -2.9
CCDC88AQ3V6T2 Y_RNA.69-201ENST00000362885 109 ntBASIC-3.09□□□□□ -2.9
CCDC88AQ3V6T2 RNU6-81P-201ENST00000365608 104 ntBASIC-3.09□□□□□ -2.9
CCDC88AQ3V6T2 RNY4P25-201ENST00000459254 96 ntBASIC-3.09□□□□□ -2.9
CCDC88AQ3V6T2 SNORA40.16-201ENST00000517238 121 ntBASIC-3.09□□□□□ -2.9
CCDC88AQ3V6T2 RNU6-895P-201ENST00000384125 103 ntBASIC-3.11□□□□□ -2.91
CCDC88AQ3V6T2 RNU6-419P-201ENST00000517030 63 ntBASIC-3.11□□□□□ -2.91
CCDC88AQ3V6T2 RNU6-231P-201ENST00000517122 103 ntBASIC-3.11□□□□□ -2.91
CCDC88AQ3V6T2 RNU6-1047P-201ENST00000364418 107 ntBASIC-3.11□□□□□ -2.91
CCDC88AQ3V6T2 AL451105.1-201ENST00000450005 189 ntBASIC-3.12□□□□□ -2.91
CCDC88AQ3V6T2 MIR3938-201ENST00000582157 103 ntBASIC-3.12□□□□□ -2.91
CCDC88AQ3V6T2 RNU6-663P-201ENST00000391105 106 ntBASIC-3.13□□□□□ -2.91
CCDC88AQ3V6T2 RNU6-1044P-201ENST00000384755 107 ntBASIC-3.14□□□□□ -2.91
CCDC88AQ3V6T2 RNU6-1117P-201ENST00000384525 104 ntBASIC-3.15□□□□□ -2.91
CCDC88AQ3V6T2 RNU6-1128P-201ENST00000362825 109 ntBASIC-3.18□□□□□ -2.92
CCDC88AQ3V6T2 MIR5588-201ENST00000581890 63 ntBASIC-3.18□□□□□ -2.92
CCDC88AQ3V6T2 U7.4-201ENST00000614961 63 ntBASIC-3.18□□□□□ -2.92
CCDC88AQ3V6T2 MIRLET7A2-201ENST00000362105 72 ntBASIC-3.18□□□□□ -2.92
CCDC88AQ3V6T2 Y_RNA.261-201ENST00000364631 102 ntBASIC-3.18□□□□□ -2.92
CCDC88AQ3V6T2 RNU6-640P-201ENST00000363693 105 ntBASIC-3.19□□□□□ -2.92
CCDC88AQ3V6T2 RNU6-687P-201ENST00000516443 89 ntBASIC-3.19□□□□□ -2.92
CCDC88AQ3V6T2 MIR4712-201ENST00000583750 82 ntBASIC-3.19□□□□□ -2.92
CCDC88AQ3V6T2 Y_RNA.266-201ENST00000364678 96 ntBASIC-3.2□□□□□ -2.92
CCDC88AQ3V6T2 Y_RNA.316-201ENST00000365118 111 ntBASIC-3.2□□□□□ -2.92
CCDC88AQ3V6T2 IGLL4P-201ENST00000614590 133 ntBASIC-3.2□□□□□ -2.92
CCDC88AQ3V6T2 MIR488-201ENST00000365739 83 ntBASIC-3.21□□□□□ -2.92
CCDC88AQ3V6T2 AL731768.1-201ENST00000603124 139 ntBASIC-3.21□□□□□ -2.92
CCDC88AQ3V6T2 Y_RNA.73-201ENST00000362910 113 ntBASIC-3.22□□□□□ -2.92
CCDC88AQ3V6T2 Y_RNA.434-201ENST00000384090 100 ntBASIC-3.22□□□□□ -2.92
CCDC88AQ3V6T2 MIR450A2-201ENST00000385022 100 ntBASIC-3.22□□□□□ -2.92
CCDC88AQ3V6T2 MIRLET7A3-201ENST00000362116 74 ntBASIC-3.22□□□□□ -2.93
CCDC88AQ3V6T2 Y_RNA.94-201ENST00000363068 106 ntBASIC-3.22□□□□□ -2.93
CCDC88AQ3V6T2 SNORA25.4-201ENST00000363666 124 ntBASIC-3.22□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-32P-201ENST00000383948 107 ntBASIC-3.22□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-13P-201ENST00000384248 107 ntBASIC-3.22□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-12P-201ENST00000384604 107 ntBASIC-3.22□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-41P-201ENST00000384741 107 ntBASIC-3.22□□□□□ -2.93
CCDC88AQ3V6T2 Y_RNA.593-201ENST00000410292 98 ntBASIC-3.23□□□□□ -2.93
CCDC88AQ3V6T2 MIR548X-201ENST00000580069 75 ntBASIC-3.23□□□□□ -2.93
CCDC88AQ3V6T2 AL365222.1-201ENST00000614661 98 ntBASIC-3.23□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-411P-201ENST00000384451 107 ntBASIC-3.24□□□□□ -2.93
CCDC88AQ3V6T2 MIR4511-201ENST00000582784 87 ntBASIC-3.24□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-209P-201ENST00000384118 107 ntBASIC-3.24□□□□□ -2.93
CCDC88AQ3V6T2 MIR3134-201ENST00000579433 74 ntBASIC-3.24□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-634P-201ENST00000459134 106 ntBASIC-3.25□□□□□ -2.93
CCDC88AQ3V6T2 MIR4666B-201ENST00000578142 81 ntBASIC-3.25□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-1134P-201ENST00000365156 101 ntBASIC-3.26□□□□□ -2.93
CCDC88AQ3V6T2 MIR3133-201ENST00000583157 78 ntBASIC-3.26□□□□□ -2.93
CCDC88AQ3V6T2 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-3.26□□□□□ -2.93
CCDC88AQ3V6T2 Y_RNA.788-201ENST00000622394 112 ntBASIC-3.26□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-742P-201ENST00000365289 107 ntBASIC-3.27□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-1154P-201ENST00000391001 104 ntBASIC-3.27□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-1131P-201ENST00000364955 107 ntBASIC-3.28□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-800P-201ENST00000384473 103 ntBASIC-3.28□□□□□ -2.93
CCDC88AQ3V6T2 MIR4317-201ENST00000637586 65 ntBASIC-3.28□□□□□ -2.93
CCDC88AQ3V6T2 RNU6-822P-201ENST00000362707 106 ntBASIC-3.28□□□□□ -2.94
CCDC88AQ3V6T2 Y_RNA.43-201ENST00000362670 111 ntBASIC-3.3□□□□□ -2.94
CCDC88AQ3V6T2 MIR548M-201ENST00000408260 86 ntBASIC-3.31□□□□□ -2.94
CCDC88AQ3V6T2 AC062037.1-201ENST00000605302 128 ntBASIC-3.31□□□□□ -2.94
CCDC88AQ3V6T2 MIR4679-1-201ENST00000637619 75 ntBASIC-3.31□□□□□ -2.94
CCDC88AQ3V6T2 RNY4P30-201ENST00000410216 95 ntBASIC-3.33□□□□□ -2.94
CCDC88AQ3V6T2 SNORD114-13-201ENST00000364377 74 ntBASIC-3.33□□□□□ -2.94
CCDC88AQ3V6T2 Y_RNA.612-201ENST00000410717 95 ntBASIC-3.33□□□□□ -2.94
CCDC88AQ3V6T2 Y_RNA.206-201ENST00000364136 102 ntBASIC-3.34□□□□□ -2.94
CCDC88AQ3V6T2 RNU6-1277P-201ENST00000364561 107 ntBASIC-3.34□□□□□ -2.94
CCDC88AQ3V6T2 RNU6-147P-201ENST00000383983 107 ntBASIC-3.34□□□□□ -2.94
CCDC88AQ3V6T2 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-3.34□□□□□ -2.94
CCDC88AQ3V6T2 RNU6-49P-201ENST00000384256 107 ntBASIC-3.35□□□□□ -2.95
CCDC88AQ3V6T2 AC103706.3-201ENST00000636297 85 ntBASIC-3.35□□□□□ -2.95
CCDC88AQ3V6T2 RNU6-1276P-201ENST00000365372 104 ntBASIC-3.36□□□□□ -2.95
CCDC88AQ3V6T2 Y_RNA.652-201ENST00000458902 102 ntBASIC-3.36□□□□□ -2.95
CCDC88AQ3V6T2 RNU6-122P-201ENST00000516818 107 ntBASIC-3.36□□□□□ -2.95
CCDC88AQ3V6T2 RNA5SP224-201ENST00000365069 126 ntBASIC-3.38□□□□□ -2.95
CCDC88AQ3V6T2 RNU6-1169P-201ENST00000363537 103 ntBASIC-3.39□□□□□ -2.95
CCDC88AQ3V6T2 AC110620.1-201ENST00000416042 228 ntBASIC-3.39□□□□□ -2.95
CCDC88AQ3V6T2 RNU6-919P-201ENST00000516731 104 ntBASIC-3.39□□□□□ -2.95
CCDC88AQ3V6T2 Y_RNA.722-201ENST00000517279 114 ntBASIC-3.4□□□□□ -2.95
CCDC88AQ3V6T2 Y_RNA.382-201ENST00000365672 114 ntBASIC-3.41□□□□□ -2.95
CCDC88AQ3V6T2 MIR1254-1-201ENST00000408257 97 ntBASIC-3.41□□□□□ -2.95
CCDC88AQ3V6T2 RNU6-787P-201ENST00000384032 107 ntBASIC-3.41□□□□□ -2.96
CCDC88AQ3V6T2 RNA5SP89-201ENST00000410300 108 ntBASIC-3.41□□□□□ -2.96
CCDC88AQ3V6T2 RNU6-820P-201ENST00000384273 107 ntBASIC-3.43□□□□□ -2.96
CCDC88AQ3V6T2 RNY4P13-201ENST00000384284 96 ntBASIC-3.43□□□□□ -2.96
CCDC88AQ3V6T2 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-3.44□□□□□ -2.96
CCDC88AQ3V6T2 RNU6-539P-201ENST00000516665 103 ntBASIC-3.44□□□□□ -2.96
CCDC88AQ3V6T2 AC090425.1-201ENST00000610007 140 ntBASIC-3.44□□□□□ -2.96
CCDC88AQ3V6T2 Y_RNA.320-201ENST00000365144 102 ntBASIC-3.45□□□□□ -2.96
CCDC88AQ3V6T2 SNORD20-201ENST00000384550 80 ntBASIC-3.45□□□□□ -2.96
CCDC88AQ3V6T2 MIR548H4-201ENST00000408689 111 ntBASIC-3.47□□□□□ -2.96
CCDC88AQ3V6T2 RNU6-871P-201ENST00000516122 100 ntBASIC-3.49□□□□□ -2.97
CCDC88AQ3V6T2 RNU6-313P-201ENST00000516317 112 ntBASIC-3.5□□□□□ -2.97
CCDC88AQ3V6T2 RNU6-294P-201ENST00000364999 102 ntBASIC-3.5□□□□□ -2.97
CCDC88AQ3V6T2 SNORD30.1-201ENST00000391309 70 ntBASIC-3.5□□□□□ -2.97
Retrieved 100 of 98,524 protein–RNA pairs in 8.6 ms