Protein–RNA interactions for Protein: P49917

LIG4, DNA ligase 4, humanhuman

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4P49917 RNU6-530P-201ENST00000391180 107 ntBASIC-1.08□□□□□ -2.58
LIG4P49917 SNORA17.4-201ENST00000391287 132 ntBASIC-1.08□□□□□ -2.58
LIG4P49917 RNU7-119P-201ENST00000459279 63 ntBASIC-1.08□□□□□ -2.58
LIG4P49917 SNORD18C-201ENST00000362704 69 ntBASIC-1.09□□□□□ -2.58
LIG4P49917 RNU6-471P-201ENST00000383944 106 ntBASIC-1.09□□□□□ -2.58
LIG4P49917 RNU4-88P-201ENST00000411220 86 ntBASIC-1.09□□□□□ -2.58
LIG4P49917 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.09□□□□□ -2.58
LIG4P49917 MIR4662A-201ENST00000637499 67 ntBASIC-1.09□□□□□ -2.58
LIG4P49917 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.1□□□□□ -2.59
LIG4P49917 AC114801.3-201ENST00000510231 177 ntBASIC-1.1□□□□□ -2.59
LIG4P49917 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.1□□□□□ -2.59
LIG4P49917 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.11□□□□□ -2.59
LIG4P49917 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.12□□□□□ -2.59
LIG4P49917 MIR4320-201ENST00000636981 65 ntBASIC-1.12□□□□□ -2.59
LIG4P49917 SNORD60-201ENST00000383903 83 ntBASIC-1.13□□□□□ -2.59
LIG4P49917 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.13□□□□□ -2.59
LIG4P49917 MIR664B-201ENST00000626756 61 ntBASIC-1.13□□□□□ -2.59
LIG4P49917 MIR4426-201ENST00000640330 63 ntBASIC-1.13□□□□□ -2.59
LIG4P49917 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.14□□□□□ -2.59
LIG4P49917 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.14□□□□□ -2.59
LIG4P49917 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.14□□□□□ -2.59
LIG4P49917 SNX3P1X-201ENST00000414887 175 ntBASIC-1.14□□□□□ -2.59
LIG4P49917 RNU6-983P-201ENST00000516004 103 ntBASIC-1.14□□□□□ -2.59
LIG4P49917 MIR548X-201ENST00000580069 75 ntBASIC-1.14□□□□□ -2.59
LIG4P49917 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.15□□□□□ -2.59
LIG4P49917 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.15□□□□□ -2.59
LIG4P49917 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.16□□□□□ -2.6
LIG4P49917 RNU6-829P-201ENST00000363700 112 ntBASIC-1.16□□□□□ -2.6
LIG4P49917 RNU6-912P-201ENST00000363800 104 ntBASIC-1.16□□□□□ -2.6
LIG4P49917 RNU6-590P-201ENST00000365039 107 ntBASIC-1.16□□□□□ -2.6
LIG4P49917 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.16□□□□□ -2.6
LIG4P49917 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.17□□□□□ -2.6
LIG4P49917 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.17□□□□□ -2.6
LIG4P49917 RNU6-980P-201ENST00000516925 103 ntBASIC-1.17□□□□□ -2.6
LIG4P49917 MIR1246-201ENST00000636535 73 ntBASIC-1.17□□□□□ -2.6
LIG4P49917 SNORD113-3-201ENST00000364830 72 ntBASIC-1.18□□□□□ -2.6
LIG4P49917 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.18□□□□□ -2.6
LIG4P49917 RNA5SP180-201ENST00000516181 101 ntBASIC-1.18□□□□□ -2.6
LIG4P49917 MIR548H4-201ENST00000408689 111 ntBASIC-1.19□□□□□ -2.6
LIG4P49917 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.19□□□□□ -2.6
LIG4P49917 RNU6-300P-201ENST00000459080 104 ntBASIC-1.19□□□□□ -2.6
LIG4P49917 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.2□□□□□ -2.6
LIG4P49917 MIR633-201ENST00000384821 98 ntBASIC-1.2□□□□□ -2.6
LIG4P49917 SNORD45.2-201ENST00000363552 72 ntBASIC-1.21□□□□□ -2.6
LIG4P49917 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.21□□□□□ -2.6
LIG4P49917 AC097484.2-201ENST00000509147 251 ntBASIC-1.21□□□□□ -2.6
LIG4P49917 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.22□□□□□ -2.6
LIG4P49917 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.22□□□□□ -2.6
LIG4P49917 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.22□□□□□ -2.6
LIG4P49917 MIR379-201ENST00000362218 67 ntBASIC-1.23□□□□□ -2.61
LIG4P49917 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.23□□□□□ -2.61
LIG4P49917 MIR4748-201ENST00000578076 82 ntBASIC-1.23□□□□□ -2.61
LIG4P49917 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.23□□□□□ -2.61
LIG4P49917 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.23□□□□□ -2.61
LIG4P49917 RNA5SP405-201ENST00000363059 114 ntBASIC-1.24□□□□□ -2.61
LIG4P49917 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.24□□□□□ -2.61
LIG4P49917 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.24□□□□□ -2.61
LIG4P49917 AC139453.2-201ENST00000487255 133 ntBASIC-1.24□□□□□ -2.61
LIG4P49917 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.25□□□□□ -2.61
LIG4P49917 RNU6-638P-201ENST00000516582 104 ntBASIC-1.25□□□□□ -2.61
LIG4P49917 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.26□□□□□ -2.61
LIG4P49917 AC079150.2-201ENST00000443733 78 ntBASIC-1.26□□□□□ -2.61
LIG4P49917 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.26□□□□□ -2.61
LIG4P49917 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.26□□□□□ -2.61
LIG4P49917 RNU6-176P-201ENST00000517196 105 ntBASIC-1.26□□□□□ -2.61
LIG4P49917 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.26□□□□□ -2.61
LIG4P49917 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.26□□□□□ -2.61
LIG4P49917 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.26□□□□□ -2.61
LIG4P49917 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.26□□□□□ -2.61
LIG4P49917 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.27□□□□□ -2.61
LIG4P49917 RNU4-33P-201ENST00000364316 85 ntBASIC-1.27□□□□□ -2.61
LIG4P49917 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.27□□□□□ -2.61
LIG4P49917 FTX_4.1-201ENST00000616291 147 ntBASIC-1.27□□□□□ -2.61
LIG4P49917 RNU6-118P-201ENST00000516552 102 ntBASIC-1.28□□□□□ -2.61
LIG4P49917 MIR601-201ENST00000385256 79 ntBASIC-1.29□□□□□ -2.62
LIG4P49917 MIR1254-1-201ENST00000408257 97 ntBASIC-1.29□□□□□ -2.62
LIG4P49917 RNU6-141P-201ENST00000410499 105 ntBASIC-1.29□□□□□ -2.62
LIG4P49917 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.3□□□□□ -2.62
LIG4P49917 SNORA72.7-201ENST00000516349 94 ntBASIC-1.3□□□□□ -2.62
LIG4P49917 MIR198-201ENST00000637333 62 ntBASIC-1.3□□□□□ -2.62
LIG4P49917 MIR548AL-201ENST00000578416 97 ntBASIC-1.31□□□□□ -2.62
LIG4P49917 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.32□□□□□ -2.62
LIG4P49917 RNU6-194P-201ENST00000363862 105 ntBASIC-1.33□□□□□ -2.62
LIG4P49917 MIR3139-201ENST00000579145 76 ntBASIC-1.34□□□□□ -2.62
LIG4P49917 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.36□□□□□ -2.63
LIG4P49917 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.36□□□□□ -2.63
LIG4P49917 RNA5SP224-201ENST00000365069 126 ntBASIC-1.37□□□□□ -2.63
LIG4P49917 RNU6-499P-201ENST00000365615 107 ntBASIC-1.37□□□□□ -2.63
LIG4P49917 MIR1285-2-201ENST00000408311 88 ntBASIC-1.37□□□□□ -2.63
LIG4P49917 RNU6-345P-201ENST00000517001 107 ntBASIC-1.37□□□□□ -2.63
LIG4P49917 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.38□□□□□ -2.63
LIG4P49917 AC125388.1-201ENST00000459631 156 ntBASIC-1.38□□□□□ -2.63
LIG4P49917 RNU6-986P-201ENST00000363133 102 ntBASIC-1.39□□□□□ -2.63
LIG4P49917 RNU6-838P-201ENST00000363399 108 ntBASIC-1.39□□□□□ -2.63
LIG4P49917 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.4□□□□□ -2.63
LIG4P49917 U4.2-201ENST00000618561 85 ntBASIC-1.4□□□□□ -2.63
LIG4P49917 MIR4317-201ENST00000637586 65 ntBASIC-1.4□□□□□ -2.63
LIG4P49917 RNU6-808P-201ENST00000391233 108 ntBASIC-1.41□□□□□ -2.64
LIG4P49917 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.41□□□□□ -2.64
LIG4P49917 MIR548F3-201ENST00000408509 87 ntBASIC-1.41□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms