Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC108019.1-201ENST00000512540 175 ntBASIC-1.55□□□□□ -2.66
SHMT1P34896 U4.2-201ENST00000618561 85 ntBASIC-1.55□□□□□ -2.66
SHMT1P34896 MIR365A-201ENST00000362260 87 ntBASIC-1.56□□□□□ -2.66
SHMT1P34896 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.56□□□□□ -2.66
SHMT1P34896 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.56□□□□□ -2.66
SHMT1P34896 MIR548AM-201ENST00000584298 74 ntBASIC-1.56□□□□□ -2.66
SHMT1P34896 MIR202-201ENST00000362219 110 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 MIR548N-201ENST00000408742 75 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 MIR4756-201ENST00000577874 78 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 AC110620.1-201ENST00000416042 228 ntBASIC-1.58□□□□□ -2.66
SHMT1P34896 RNU6-983P-201ENST00000516004 103 ntBASIC-1.58□□□□□ -2.66
SHMT1P34896 MIR3938-201ENST00000582157 103 ntBASIC-1.58□□□□□ -2.66
SHMT1P34896 RNU6-361P-201ENST00000364454 107 ntBASIC-1.59□□□□□ -2.66
SHMT1P34896 MIR466-201ENST00000580653 84 ntBASIC-1.59□□□□□ -2.66
SHMT1P34896 RNU6-471P-201ENST00000383944 106 ntBASIC-1.6□□□□□ -2.67
SHMT1P34896 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.6□□□□□ -2.67
SHMT1P34896 MIR548W-201ENST00000581970 74 ntBASIC-1.6□□□□□ -2.67
SHMT1P34896 MIR4441-201ENST00000582623 100 ntBASIC-1.6□□□□□ -2.67
SHMT1P34896 AL451105.1-201ENST00000450005 189 ntBASIC-1.61□□□□□ -2.67
SHMT1P34896 SNORD18C-201ENST00000362704 69 ntBASIC-1.62□□□□□ -2.67
SHMT1P34896 RNU6-638P-201ENST00000516582 104 ntBASIC-1.62□□□□□ -2.67
SHMT1P34896 SNORD114-3-201ENST00000364969 75 ntBASIC-1.63□□□□□ -2.67
SHMT1P34896 RNU6-530P-201ENST00000391180 107 ntBASIC-1.63□□□□□ -2.67
SHMT1P34896 SNORA17.4-201ENST00000391287 132 ntBASIC-1.63□□□□□ -2.67
SHMT1P34896 snoU13.10-201ENST00000459301 103 ntBASIC-1.64□□□□□ -2.67
SHMT1P34896 RNU6-68P-201ENST00000516576 104 ntBASIC-1.64□□□□□ -2.67
SHMT1P34896 RNU6-419P-201ENST00000517030 63 ntBASIC-1.64□□□□□ -2.67
SHMT1P34896 SNORD60-201ENST00000383903 83 ntBASIC-1.65□□□□□ -2.67
SHMT1P34896 RNU4-88P-201ENST00000411220 86 ntBASIC-1.66□□□□□ -2.68
SHMT1P34896 MIR664B-201ENST00000626756 61 ntBASIC-1.66□□□□□ -2.68
SHMT1P34896 RNU6-446P-201ENST00000362827 106 ntBASIC-1.68□□□□□ -2.68
SHMT1P34896 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.68□□□□□ -2.68
SHMT1P34896 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.68□□□□□ -2.68
SHMT1P34896 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.68□□□□□ -2.68
SHMT1P34896 MIR1207-201ENST00000408249 87 ntBASIC-1.69□□□□□ -2.68
SHMT1P34896 RNU6-980P-201ENST00000516925 103 ntBASIC-1.69□□□□□ -2.68
SHMT1P34896 MIR4426-201ENST00000640330 63 ntBASIC-1.7□□□□□ -2.68
SHMT1P34896 RNU6-742P-201ENST00000365289 107 ntBASIC-1.71□□□□□ -2.68
SHMT1P34896 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.72□□□□□ -2.68
SHMT1P34896 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.72□□□□□ -2.68
SHMT1P34896 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.72□□□□□ -2.68
SHMT1P34896 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.72□□□□□ -2.68
SHMT1P34896 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.72□□□□□ -2.68
SHMT1P34896 SNORD45.2-201ENST00000363552 72 ntBASIC-1.73□□□□□ -2.69
SHMT1P34896 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.73□□□□□ -2.69
SHMT1P34896 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.74□□□□□ -2.69
SHMT1P34896 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.74□□□□□ -2.69
SHMT1P34896 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.75□□□□□ -2.69
SHMT1P34896 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.75□□□□□ -2.69
SHMT1P34896 RNU6-590P-201ENST00000365039 107 ntBASIC-1.76□□□□□ -2.69
SHMT1P34896 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.76□□□□□ -2.69
SHMT1P34896 MIR548X-201ENST00000580069 75 ntBASIC-1.76□□□□□ -2.69
SHMT1P34896 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.77□□□□□ -2.69
SHMT1P34896 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.78□□□□□ -2.69
SHMT1P34896 RNU6-300P-201ENST00000459080 104 ntBASIC-1.78□□□□□ -2.69
SHMT1P34896 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.78□□□□□ -2.69
SHMT1P34896 SNORD113-4-201ENST00000364802 75 ntBASIC-1.79□□□□□ -2.7
SHMT1P34896 RNA5SP405-201ENST00000363059 114 ntBASIC-1.8□□□□□ -2.7
SHMT1P34896 RNU6-912P-201ENST00000363800 104 ntBASIC-1.8□□□□□ -2.7
SHMT1P34896 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.8□□□□□ -2.7
SHMT1P34896 MIR379-201ENST00000362218 67 ntBASIC-1.81□□□□□ -2.7
SHMT1P34896 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.81□□□□□ -2.7
SHMT1P34896 AC097484.2-201ENST00000509147 251 ntBASIC-1.81□□□□□ -2.7
SHMT1P34896 RNY4P27-201ENST00000363341 96 ntBASIC-1.82□□□□□ -2.7
SHMT1P34896 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.82□□□□□ -2.7
SHMT1P34896 RNU6-194P-201ENST00000363862 105 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 SNORD113-3-201ENST00000364830 72 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 RNU6-118P-201ENST00000516552 102 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 RNU6-176P-201ENST00000517196 105 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.84□□□□□ -2.7
SHMT1P34896 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.84□□□□□ -2.7
SHMT1P34896 AC125388.1-201ENST00000459631 156 ntBASIC-1.85□□□□□ -2.71
SHMT1P34896 RNU6-829P-201ENST00000363700 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 MIR4748-201ENST00000578076 82 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 MIR3139-201ENST00000579145 76 ntBASIC-1.88□□□□□ -2.71
SHMT1P34896 FTX_4.1-201ENST00000616291 147 ntBASIC-1.89□□□□□ -2.71
SHMT1P34896 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.9□□□□□ -2.71
SHMT1P34896 MIR633-201ENST00000384821 98 ntBASIC-1.9□□□□□ -2.71
SHMT1P34896 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.91□□□□□ -2.72
SHMT1P34896 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.92□□□□□ -2.72
SHMT1P34896 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.93□□□□□ -2.72
SHMT1P34896 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.93□□□□□ -2.72
SHMT1P34896 MIR548H4-201ENST00000408689 111 ntBASIC-1.93□□□□□ -2.72
SHMT1P34896 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.93□□□□□ -2.72
SHMT1P34896 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.94□□□□□ -2.72
SHMT1P34896 AC139453.2-201ENST00000487255 133 ntBASIC-1.94□□□□□ -2.72
SHMT1P34896 RNU4-33P-201ENST00000364316 85 ntBASIC-1.95□□□□□ -2.72
SHMT1P34896 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.96□□□□□ -2.72
SHMT1P34896 MT-TM-201ENST00000387377 68 ntBASIC-1.97□□□□□ -2.72
SHMT1P34896 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.97□□□□□ -2.72
SHMT1P34896 MIR1254-1-201ENST00000408257 97 ntBASIC-1.98□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 208.7 ms