Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR4263-201ENST00000584745 83 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 MIR6718-201ENST00000616153 80 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 SNORD114-12-201ENST00000365400 75 ntBASIC0.11□□□□□ -2.39
CCDC39Q9UFE4 MIR204-201ENST00000385200 110 ntBASIC0.11□□□□□ -2.39
CCDC39Q9UFE4 Y_RNA.603-201ENST00000410571 108 ntBASIC0.11□□□□□ -2.39
CCDC39Q9UFE4 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC0.11□□□□□ -2.39
CCDC39Q9UFE4 RNA5SP257-201ENST00000363023 116 ntBASIC0.1□□□□□ -2.39
CCDC39Q9UFE4 MIR548N-201ENST00000408742 75 ntBASIC0.1□□□□□ -2.39
CCDC39Q9UFE4 AC013734.1-201ENST00000619329 111 ntBASIC0.09□□□□□ -2.4
CCDC39Q9UFE4 SNORA18.1-201ENST00000363418 128 ntBASIC0.08□□□□□ -2.4
CCDC39Q9UFE4 SNORA13-201ENST00000458790 133 ntBASIC0.08□□□□□ -2.4
CCDC39Q9UFE4 SNORD111B-201ENST00000408587 80 ntBASIC0.06□□□□□ -2.4
CCDC39Q9UFE4 MIR3666-201ENST00000607845 111 ntBASIC0.06□□□□□ -2.4
CCDC39Q9UFE4 MIR23C-201ENST00000579846 100 ntBASIC0.05□□□□□ -2.4
CCDC39Q9UFE4 SNORD114-11-201ENST00000363738 75 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 MIR581-201ENST00000384895 96 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 AC090616.4-201ENST00000448026 115 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 MIR5190-201ENST00000581537 80 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 MIR4788-201ENST00000639104 80 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 MIR4645-201ENST00000583158 77 ntBASIC0.03□□□□□ -2.4
CCDC39Q9UFE4 RNU6-894P-201ENST00000517094 105 ntBASIC0.02□□□□□ -2.41
CCDC39Q9UFE4 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
CCDC39Q9UFE4 MIR1295B-201ENST00000636144 60 ntBASIC0.02□□□□□ -2.41
CCDC39Q9UFE4 Y_RNA.223-201ENST00000364290 113 ntBASIC0.01□□□□□ -2.41
CCDC39Q9UFE4 RNA5SP26-201ENST00000362406 119 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 SNORA32.1-201ENST00000364514 115 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 RNU6-563P-201ENST00000364872 108 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 AC120024.2-201ENST00000576526 175 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 MIR4768-201ENST00000585270 74 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 U6.97-201ENST00000636904 101 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 RNU6-485P-201ENST00000363475 107 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 RNA5SP300-201ENST00000391197 107 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 SNORD4A-201ENST00000459174 72 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 SNORD114-16-201ENST00000363044 70 ntBASIC-0.02□□□□□ -2.41
CCDC39Q9UFE4 MIR371B-201ENST00000638082 66 ntBASIC-0.02□□□□□ -2.41
CCDC39Q9UFE4 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 RNU6-133P-201ENST00000383989 107 ntBASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 RNU6-68P-201ENST00000516576 104 ntBASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 Y_RNA.320-201ENST00000365144 102 ntBASIC-0.04□□□□□ -2.42
CCDC39Q9UFE4 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.05□□□□□ -2.42
CCDC39Q9UFE4 RNA5SP285-201ENST00000516619 119 ntBASIC-0.05□□□□□ -2.42
CCDC39Q9UFE4 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.07□□□□□ -2.42
CCDC39Q9UFE4 SNORD115.2-201ENST00000391126 59 ntBASIC-0.07□□□□□ -2.42
CCDC39Q9UFE4 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.07□□□□□ -2.42
CCDC39Q9UFE4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.08□□□□□ -2.42
CCDC39Q9UFE4 AC021146.6-201ENST00000514659 117 ntBASIC-0.08□□□□□ -2.42
CCDC39Q9UFE4 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.09□□□□□ -2.42
CCDC39Q9UFE4 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.1□□□□□ -2.43
CCDC39Q9UFE4 MIR6759-201ENST00000638110 65 ntBASIC-0.11□□□□□ -2.43
CCDC39Q9UFE4 MIR379-201ENST00000362218 67 ntBASIC-0.12□□□□□ -2.43
CCDC39Q9UFE4 SNORD18C-201ENST00000362704 69 ntBASIC-0.12□□□□□ -2.43
CCDC39Q9UFE4 RNU6-695P-201ENST00000391157 104 ntBASIC-0.12□□□□□ -2.43
CCDC39Q9UFE4 MIR147A-201ENST00000385079 72 ntBASIC-0.13□□□□□ -2.43
CCDC39Q9UFE4 RNA5SP67-201ENST00000516422 131 ntBASIC-0.13□□□□□ -2.43
CCDC39Q9UFE4 RNU6-431P-201ENST00000383874 107 ntBASIC-0.14□□□□□ -2.43
CCDC39Q9UFE4 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.15□□□□□ -2.43
CCDC39Q9UFE4 MIR4802-201ENST00000581881 80 ntBASIC-0.15□□□□□ -2.43
CCDC39Q9UFE4 AC018880.2-201ENST00000414265 201 ntBASIC-0.16□□□□□ -2.44
CCDC39Q9UFE4 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.16□□□□□ -2.44
CCDC39Q9UFE4 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.17□□□□□ -2.44
CCDC39Q9UFE4 SNORD64-201ENST00000386683 67 ntBASIC-0.17□□□□□ -2.44
CCDC39Q9UFE4 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.18□□□□□ -2.44
CCDC39Q9UFE4 SNORA3B-201ENST00000391305 131 ntBASIC-0.18□□□□□ -2.44
CCDC39Q9UFE4 MIR4636-201ENST00000582271 80 ntBASIC-0.18□□□□□ -2.44
CCDC39Q9UFE4 MIR6818-201ENST00000621576 65 ntBASIC-0.18□□□□□ -2.44
CCDC39Q9UFE4 RNU6-836P-201ENST00000362920 107 ntBASIC-0.19□□□□□ -2.44
CCDC39Q9UFE4 Z95118.1-201ENST00000421372 247 ntBASIC-0.19□□□□□ -2.44
CCDC39Q9UFE4 MIR5589-201ENST00000579442 60 ntBASIC-0.2□□□□□ -2.44
CCDC39Q9UFE4 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.21□□□□□ -2.44
CCDC39Q9UFE4 MIR214-201ENST00000385214 110 ntBASIC-0.21□□□□□ -2.44
CCDC39Q9UFE4 RNU6-79P-201ENST00000362511 107 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 SNORD114-31-201ENST00000363219 75 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 RNU6-912P-201ENST00000363800 104 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 RNA5SP224-201ENST00000365069 126 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 MIR4436A-201ENST00000585278 85 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 SNORD114-14-201ENST00000362723 75 ntBASIC-0.23□□□□□ -2.45
CCDC39Q9UFE4 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.23□□□□□ -2.45
CCDC39Q9UFE4 RNU6-164P-201ENST00000364604 103 ntBASIC-0.24□□□□□ -2.45
CCDC39Q9UFE4 Y_RNA.260-201ENST00000364628 101 ntBASIC-0.24□□□□□ -2.45
CCDC39Q9UFE4 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.24□□□□□ -2.45
CCDC39Q9UFE4 MIR196A2-201ENST00000385189 110 ntBASIC-0.25□□□□□ -2.45
CCDC39Q9UFE4 MIR382-201ENST00000637119 76 ntBASIC-0.25□□□□□ -2.45
CCDC39Q9UFE4 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.26□□□□□ -2.45
CCDC39Q9UFE4 SNORD126-201ENST00000459475 77 ntBASIC-0.26□□□□□ -2.45
CCDC39Q9UFE4 IGLVI-20-201ENST00000519296 130 ntBASIC-0.26□□□□□ -2.45
CCDC39Q9UFE4 FTX_4.1-201ENST00000616291 147 ntBASIC-0.26□□□□□ -2.45
CCDC39Q9UFE4 SNORD14C-201ENST00000365382 88 ntBASIC-0.27□□□□□ -2.45
CCDC39Q9UFE4 RNU6-284P-201ENST00000411105 106 ntBASIC-0.27□□□□□ -2.45
CCDC39Q9UFE4 Y_RNA.519-201ENST00000384553 102 ntBASIC-0.28□□□□□ -2.45
CCDC39Q9UFE4 snoU83B.1-201ENST00000517136 88 ntBASIC-0.29□□□□□ -2.46
CCDC39Q9UFE4 AP001180.6-201ENST00000584918 159 ntBASIC-0.29□□□□□ -2.46
CCDC39Q9UFE4 SNORD114-25-201ENST00000363742 72 ntBASIC-0.3□□□□□ -2.46
CCDC39Q9UFE4 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.3□□□□□ -2.46
CCDC39Q9UFE4 RNU7-134P-201ENST00000458997 64 ntBASIC-0.31□□□□□ -2.46
CCDC39Q9UFE4 MIR4493-201ENST00000584016 73 ntBASIC-0.31□□□□□ -2.46
CCDC39Q9UFE4 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 194 ms