Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 RNY3P8-201ENST00000411366 126 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 MIR4756-201ENST00000577874 78 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 MIR1245B-201ENST00000636115 69 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 SNORA27.2-201ENST00000363365 126 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 RNU6-940P-201ENST00000363433 104 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 RNU6-649P-201ENST00000384463 107 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 RNU6-523P-201ENST00000516304 54 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 MIR4666B-201ENST00000578142 81 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 MIR5588-201ENST00000581890 63 ntBASIC-1.08□□□□□ -2.58
CCDC88CQ9P219 RNU6-841P-201ENST00000383872 107 ntBASIC-1.09□□□□□ -2.58
CCDC88CQ9P219 AC108019.1-201ENST00000512540 175 ntBASIC-1.09□□□□□ -2.58
CCDC88CQ9P219 RNU6-92P-201ENST00000605893 104 ntBASIC-1.09□□□□□ -2.58
CCDC88CQ9P219 RNU6-294P-201ENST00000364999 102 ntBASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 SNORD60-201ENST00000383903 83 ntBASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 MIR581-201ENST00000384895 96 ntBASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 RNA5SP86-201ENST00000390869 98 ntBASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 RNU6-995P-201ENST00000391244 107 ntBASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 SNORD63.2-201ENST00000516303 64 ntBASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 IGLL4P-201ENST00000614590 133 ntBASIC-1.1□□□□□ -2.58
CCDC88CQ9P219 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.1□□□□□ -2.59
CCDC88CQ9P219 RNU6-32P-201ENST00000383948 107 ntBASIC-1.1□□□□□ -2.59
CCDC88CQ9P219 RNU6-13P-201ENST00000384248 107 ntBASIC-1.1□□□□□ -2.59
CCDC88CQ9P219 RNU6-12P-201ENST00000384604 107 ntBASIC-1.1□□□□□ -2.59
CCDC88CQ9P219 RNU6-41P-201ENST00000384741 107 ntBASIC-1.1□□□□□ -2.59
CCDC88CQ9P219 MIR3668-201ENST00000582138 75 ntBASIC-1.1□□□□□ -2.59
CCDC88CQ9P219 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 MIR548AI-201ENST00000579940 88 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 SNORD18C-201ENST00000362704 69 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 RNU6-663P-201ENST00000391105 106 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 RNU6-983P-201ENST00000516004 103 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 MIR664B-201ENST00000626756 61 ntBASIC-1.11□□□□□ -2.59
CCDC88CQ9P219 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.12□□□□□ -2.59
CCDC88CQ9P219 MIR125B1-201ENST00000385236 88 ntBASIC-1.12□□□□□ -2.59
CCDC88CQ9P219 MIR548N-201ENST00000408742 75 ntBASIC-1.12□□□□□ -2.59
CCDC88CQ9P219 RNU6-380P-201ENST00000410207 107 ntBASIC-1.12□□□□□ -2.59
CCDC88CQ9P219 MIR379-201ENST00000362218 67 ntBASIC-1.13□□□□□ -2.59
CCDC88CQ9P219 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.13□□□□□ -2.59
CCDC88CQ9P219 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.13□□□□□ -2.59
CCDC88CQ9P219 RNU6-810P-201ENST00000364001 107 ntBASIC-1.13□□□□□ -2.59
CCDC88CQ9P219 RNA5SP173-201ENST00000364857 136 ntBASIC-1.13□□□□□ -2.59
CCDC88CQ9P219 SNORD116.2-201ENST00000391251 93 ntBASIC-1.13□□□□□ -2.59
CCDC88CQ9P219 RNU6-172P-201ENST00000411000 93 ntBASIC-1.13□□□□□ -2.59
CCDC88CQ9P219 RNU6-912P-201ENST00000363800 104 ntBASIC-1.14□□□□□ -2.59
CCDC88CQ9P219 RNU6-361P-201ENST00000364454 107 ntBASIC-1.14□□□□□ -2.59
CCDC88CQ9P219 RNU4-88P-201ENST00000411220 86 ntBASIC-1.14□□□□□ -2.59
CCDC88CQ9P219 MIR3134-201ENST00000579433 74 ntBASIC-1.14□□□□□ -2.59
CCDC88CQ9P219 U7.4-201ENST00000614961 63 ntBASIC-1.14□□□□□ -2.59
CCDC88CQ9P219 SNORD18.1-201ENST00000363807 70 ntBASIC-1.15□□□□□ -2.59
CCDC88CQ9P219 RNY4P7-201ENST00000364600 96 ntBASIC-1.15□□□□□ -2.59
CCDC88CQ9P219 SNORD113-1-201ENST00000365321 69 ntBASIC-1.15□□□□□ -2.59
CCDC88CQ9P219 RNU6-411P-201ENST00000384451 107 ntBASIC-1.15□□□□□ -2.59
CCDC88CQ9P219 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.15□□□□□ -2.59
CCDC88CQ9P219 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.16□□□□□ -2.59
CCDC88CQ9P219 RNU6-215P-201ENST00000365169 102 ntBASIC-1.16□□□□□ -2.59
CCDC88CQ9P219 RNU6-313P-201ENST00000516317 112 ntBASIC-1.16□□□□□ -2.59
CCDC88CQ9P219 MIR4712-201ENST00000583750 82 ntBASIC-1.16□□□□□ -2.59
CCDC88CQ9P219 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.16□□□□□ -2.6
CCDC88CQ9P219 RNU6-820P-201ENST00000384273 107 ntBASIC-1.16□□□□□ -2.6
CCDC88CQ9P219 MIR3938-201ENST00000582157 103 ntBASIC-1.16□□□□□ -2.6
CCDC88CQ9P219 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.16□□□□□ -2.6
CCDC88CQ9P219 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.17□□□□□ -2.6
CCDC88CQ9P219 RNU6-687P-201ENST00000516443 89 ntBASIC-1.17□□□□□ -2.6
CCDC88CQ9P219 MIR5582-201ENST00000579697 68 ntBASIC-1.17□□□□□ -2.6
CCDC88CQ9P219 SNORA40B-201ENST00000385573 128 ntBASIC-1.18□□□□□ -2.6
CCDC88CQ9P219 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.18□□□□□ -2.6
CCDC88CQ9P219 MIR494-201ENST00000349529 81 ntBASIC-1.18□□□□□ -2.6
CCDC88CQ9P219 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.18□□□□□ -2.6
CCDC88CQ9P219 RNA5SP93-201ENST00000362525 114 ntBASIC-1.19□□□□□ -2.6
CCDC88CQ9P219 RNU6-980P-201ENST00000516925 103 ntBASIC-1.19□□□□□ -2.6
CCDC88CQ9P219 MIR7110-201ENST00000612638 86 ntBASIC-1.19□□□□□ -2.6
CCDC88CQ9P219 MIR202-201ENST00000362219 110 ntBASIC-1.2□□□□□ -2.6
CCDC88CQ9P219 RNU6-895P-201ENST00000384125 103 ntBASIC-1.2□□□□□ -2.6
CCDC88CQ9P219 SNORA40.16-201ENST00000517238 121 ntBASIC-1.2□□□□□ -2.6
CCDC88CQ9P219 RNU6-153P-201ENST00000364422 104 ntBASIC-1.21□□□□□ -2.6
CCDC88CQ9P219 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.21□□□□□ -2.6
CCDC88CQ9P219 RNU7-160P-201ENST00000516660 62 ntBASIC-1.21□□□□□ -2.6
CCDC88CQ9P219 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.22□□□□□ -2.6
CCDC88CQ9P219 RNU6-520P-201ENST00000384717 104 ntBASIC-1.22□□□□□ -2.6
CCDC88CQ9P219 RNU6-68P-201ENST00000516576 104 ntBASIC-1.22□□□□□ -2.6
CCDC88CQ9P219 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.22□□□□□ -2.6
CCDC88CQ9P219 AC062037.1-201ENST00000605302 128 ntBASIC-1.22□□□□□ -2.6
CCDC88CQ9P219 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.23□□□□□ -2.61
CCDC88CQ9P219 SNORA17.4-201ENST00000391287 132 ntBASIC-1.23□□□□□ -2.61
CCDC88CQ9P219 RNU6-634P-201ENST00000459134 106 ntBASIC-1.23□□□□□ -2.61
CCDC88CQ9P219 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.23□□□□□ -2.61
CCDC88CQ9P219 RNA5SP405-201ENST00000363059 114 ntBASIC-1.23□□□□□ -2.61
CCDC88CQ9P219 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.23□□□□□ -2.61
CCDC88CQ9P219 RNU6-406P-201ENST00000516470 107 ntBASIC-1.23□□□□□ -2.61
CCDC88CQ9P219 SNORD45.2-201ENST00000363552 72 ntBASIC-1.24□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 214 ms