Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR587-201ENST00000384845 96 ntBASIC-1.39□□□□□ -2.63
CCDC28AQ8IWP9 MIR579-201ENST00000385221 98 ntBASIC-1.39□□□□□ -2.63
CCDC28AQ8IWP9 RPL35AP4-201ENST00000412007 102 ntBASIC-1.39□□□□□ -2.63
CCDC28AQ8IWP9 RNU6-231P-201ENST00000517122 103 ntBASIC-1.39□□□□□ -2.63
CCDC28AQ8IWP9 MIR520D-201ENST00000385002 87 ntBASIC-1.4□□□□□ -2.63
CCDC28AQ8IWP9 RNU6-10P-201ENST00000384036 107 ntBASIC-1.41□□□□□ -2.64
CCDC28AQ8IWP9 RNU6-576P-201ENST00000390854 102 ntBASIC-1.41□□□□□ -2.64
CCDC28AQ8IWP9 MIR378F-201ENST00000578143 78 ntBASIC-1.41□□□□□ -2.64
CCDC28AQ8IWP9 MIR7978-201ENST00000636158 59 ntBASIC-1.41□□□□□ -2.64
CCDC28AQ8IWP9 RNU6-608P-201ENST00000383927 104 ntBASIC-1.42□□□□□ -2.64
CCDC28AQ8IWP9 RNU7-160P-201ENST00000516660 62 ntBASIC-1.42□□□□□ -2.64
CCDC28AQ8IWP9 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.44□□□□□ -2.64
CCDC28AQ8IWP9 AC090616.4-201ENST00000448026 115 ntBASIC-1.44□□□□□ -2.64
CCDC28AQ8IWP9 RNU7-119P-201ENST00000459279 63 ntBASIC-1.44□□□□□ -2.64
CCDC28AQ8IWP9 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.45□□□□□ -2.64
CCDC28AQ8IWP9 RNU6-471P-201ENST00000383944 106 ntBASIC-1.45□□□□□ -2.64
CCDC28AQ8IWP9 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.45□□□□□ -2.64
CCDC28AQ8IWP9 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.45□□□□□ -2.64
CCDC28AQ8IWP9 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.45□□□□□ -2.64
CCDC28AQ8IWP9 MIR125B1-201ENST00000385236 88 ntBASIC-1.46□□□□□ -2.64
CCDC28AQ8IWP9 SNORD116.2-201ENST00000391251 93 ntBASIC-1.46□□□□□ -2.64
CCDC28AQ8IWP9 RNU6-164P-201ENST00000364604 103 ntBASIC-1.47□□□□□ -2.64
CCDC28AQ8IWP9 AC110620.1-201ENST00000416042 228 ntBASIC-1.47□□□□□ -2.64
CCDC28AQ8IWP9 MIR23C-201ENST00000579846 100 ntBASIC-1.47□□□□□ -2.64
CCDC28AQ8IWP9 MIR466-201ENST00000580653 84 ntBASIC-1.48□□□□□ -2.65
CCDC28AQ8IWP9 MIR409-201ENST00000362237 79 ntBASIC-1.49□□□□□ -2.65
CCDC28AQ8IWP9 RNU6-810P-201ENST00000364001 107 ntBASIC-1.49□□□□□ -2.65
CCDC28AQ8IWP9 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.49□□□□□ -2.65
CCDC28AQ8IWP9 SNORD63.2-201ENST00000516303 64 ntBASIC-1.49□□□□□ -2.65
CCDC28AQ8IWP9 RNU6-669P-201ENST00000365575 107 ntBASIC-1.5□□□□□ -2.65
CCDC28AQ8IWP9 MIR3938-201ENST00000582157 103 ntBASIC-1.5□□□□□ -2.65
CCDC28AQ8IWP9 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.5□□□□□ -2.65
CCDC28AQ8IWP9 SNORA40B-201ENST00000385573 128 ntBASIC-1.51□□□□□ -2.65
CCDC28AQ8IWP9 RNU7-134P-201ENST00000458997 64 ntBASIC-1.51□□□□□ -2.65
CCDC28AQ8IWP9 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.52□□□□□ -2.65
CCDC28AQ8IWP9 MIR4306-201ENST00000583390 91 ntBASIC-1.52□□□□□ -2.65
CCDC28AQ8IWP9 RNU6-828P-201ENST00000364876 107 ntBASIC-1.53□□□□□ -2.65
CCDC28AQ8IWP9 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.54□□□□□ -2.66
CCDC28AQ8IWP9 SNORA27.2-201ENST00000363365 126 ntBASIC-1.54□□□□□ -2.66
CCDC28AQ8IWP9 AC018880.2-201ENST00000414265 201 ntBASIC-1.54□□□□□ -2.66
CCDC28AQ8IWP9 MIR3115-201ENST00000577915 68 ntBASIC-1.54□□□□□ -2.66
CCDC28AQ8IWP9 RNU6-520P-201ENST00000384717 104 ntBASIC-1.55□□□□□ -2.66
CCDC28AQ8IWP9 RNU6-258P-201ENST00000390884 101 ntBASIC-1.56□□□□□ -2.66
CCDC28AQ8IWP9 MIR3165-201ENST00000579874 75 ntBASIC-1.56□□□□□ -2.66
CCDC28AQ8IWP9 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.57□□□□□ -2.66
CCDC28AQ8IWP9 RNA5SP266-201ENST00000410273 108 ntBASIC-1.57□□□□□ -2.66
CCDC28AQ8IWP9 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.58□□□□□ -2.66
CCDC28AQ8IWP9 SNORA40.16-201ENST00000517238 121 ntBASIC-1.58□□□□□ -2.66
CCDC28AQ8IWP9 MIR4320-201ENST00000636981 65 ntBASIC-1.58□□□□□ -2.66
CCDC28AQ8IWP9 MIR1468-201ENST00000410600 86 ntBASIC-1.59□□□□□ -2.66
CCDC28AQ8IWP9 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.59□□□□□ -2.66
CCDC28AQ8IWP9 RNU6-590P-201ENST00000365039 107 ntBASIC-1.61□□□□□ -2.67
CCDC28AQ8IWP9 AC091912.2-201ENST00000624798 167 ntBASIC-1.61□□□□□ -2.67
CCDC28AQ8IWP9 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.64□□□□□ -2.67
CCDC28AQ8IWP9 MIR6874-201ENST00000635894 71 ntBASIC-1.64□□□□□ -2.67
CCDC28AQ8IWP9 RNU6-706P-201ENST00000517229 104 ntBASIC-1.65□□□□□ -2.67
CCDC28AQ8IWP9 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.65□□□□□ -2.67
CCDC28AQ8IWP9 RNU6-974P-201ENST00000384099 108 ntBASIC-1.66□□□□□ -2.68
CCDC28AQ8IWP9 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.67□□□□□ -2.68
CCDC28AQ8IWP9 RNU6-79P-201ENST00000362511 107 ntBASIC-1.68□□□□□ -2.68
CCDC28AQ8IWP9 AC125388.1-201ENST00000459631 156 ntBASIC-1.68□□□□□ -2.68
CCDC28AQ8IWP9 MIR8485-201ENST00000401372 91 ntBASIC-1.69□□□□□ -2.68
CCDC28AQ8IWP9 AC120024.2-201ENST00000576526 175 ntBASIC-1.69□□□□□ -2.68
CCDC28AQ8IWP9 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.7□□□□□ -2.68
CCDC28AQ8IWP9 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.7□□□□□ -2.68
CCDC28AQ8IWP9 RNU6-400P-201ENST00000391173 106 ntBASIC-1.7□□□□□ -2.68
CCDC28AQ8IWP9 SNORD45.2-201ENST00000363552 72 ntBASIC-1.72□□□□□ -2.68
CCDC28AQ8IWP9 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.72□□□□□ -2.68
CCDC28AQ8IWP9 AC138207.3-201ENST00000585289 166 ntBASIC-1.73□□□□□ -2.69
CCDC28AQ8IWP9 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.74□□□□□ -2.69
CCDC28AQ8IWP9 SNX3P1X-201ENST00000414887 175 ntBASIC-1.75□□□□□ -2.69
CCDC28AQ8IWP9 AL451105.1-201ENST00000450005 189 ntBASIC-1.76□□□□□ -2.69
CCDC28AQ8IWP9 RNU6-563P-201ENST00000364872 108 ntBASIC-1.77□□□□□ -2.69
CCDC28AQ8IWP9 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.77□□□□□ -2.69
CCDC28AQ8IWP9 RNY3P8-201ENST00000411366 126 ntBASIC-1.77□□□□□ -2.69
CCDC28AQ8IWP9 RNA5SP461-201ENST00000516451 104 ntBASIC-1.77□□□□□ -2.69
CCDC28AQ8IWP9 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.77□□□□□ -2.69
CCDC28AQ8IWP9 RNA5SP331-201ENST00000364986 107 ntBASIC-1.79□□□□□ -2.7
CCDC28AQ8IWP9 HLA-S-202ENST00000425174 53 ntBASIC-1.79□□□□□ -2.7
CCDC28AQ8IWP9 RNU6-419P-201ENST00000517030 63 ntBASIC-1.8□□□□□ -2.7
CCDC28AQ8IWP9 MIR6502-201ENST00000617296 76 ntBASIC-1.8□□□□□ -2.7
CCDC28AQ8IWP9 MIR5591-201ENST00000578248 65 ntBASIC-1.81□□□□□ -2.7
CCDC28AQ8IWP9 RNU6-530P-201ENST00000391180 107 ntBASIC-1.84□□□□□ -2.7
CCDC28AQ8IWP9 AL627230.5-201ENST00000619807 58 ntBASIC-1.84□□□□□ -2.7
CCDC28AQ8IWP9 MIR198-201ENST00000637333 62 ntBASIC-1.84□□□□□ -2.7
CCDC28AQ8IWP9 RNU6-446P-201ENST00000362827 106 ntBASIC-1.85□□□□□ -2.71
CCDC28AQ8IWP9 AC013734.1-201ENST00000619329 111 ntBASIC-1.85□□□□□ -2.71
CCDC28AQ8IWP9 SNORD60-201ENST00000383903 83 ntBASIC-1.86□□□□□ -2.71
CCDC28AQ8IWP9 MIR601-201ENST00000385256 79 ntBASIC-1.87□□□□□ -2.71
CCDC28AQ8IWP9 AC139453.2-201ENST00000487255 133 ntBASIC-1.87□□□□□ -2.71
CCDC28AQ8IWP9 RNA5SP180-201ENST00000516181 101 ntBASIC-1.87□□□□□ -2.71
CCDC28AQ8IWP9 MIR4770-201ENST00000579149 58 ntBASIC-1.87□□□□□ -2.71
CCDC28AQ8IWP9 MIR4520-1-201ENST00000582609 70 ntBASIC-1.87□□□□□ -2.71
CCDC28AQ8IWP9 MIR202-201ENST00000362219 110 ntBASIC-1.88□□□□□ -2.71
CCDC28AQ8IWP9 RNU6-361P-201ENST00000364454 107 ntBASIC-1.89□□□□□ -2.71
CCDC28AQ8IWP9 MIR548X-201ENST00000580069 75 ntBASIC-1.89□□□□□ -2.71
CCDC28AQ8IWP9 MIR633-201ENST00000384821 98 ntBASIC-1.9□□□□□ -2.71
CCDC28AQ8IWP9 RNU6-695P-201ENST00000391157 104 ntBASIC-1.9□□□□□ -2.71
CCDC28AQ8IWP9 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.91□□□□□ -2.72
CCDC28AQ8IWP9 SNORA17.4-201ENST00000391287 132 ntBASIC-1.91□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 248.7 ms