Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU6-196P-201ENST00000384315 107 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 RNU6-520P-201ENST00000384717 104 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 U6atac.1-201ENST00000616025 117 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 SNORD116-22-201ENST00000384430 92 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 SNORA40-201ENST00000388090 126 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 Y_RNA.343-201ENST00000365354 112 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 RNU6-402P-201ENST00000410678 103 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 MTND4LP9-201ENST00000427694 174 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 AP000770.2-201ENST00000623694 100 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 Y_RNA.15-201ENST00000362420 102 ntBASIC-2.1□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.11□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.668-201ENST00000516233 93 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 RNU6-742P-201ENST00000365289 107 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 MIR4317-201ENST00000637586 65 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 SNORA63.4-201ENST00000362763 126 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 RNU6-659P-201ENST00000516454 104 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 SNORD116-21-201ENST00000384507 92 ntBASIC-2.13□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.13□□□□□ -2.75
CHD9Q3L8U1 RNU6-68P-201ENST00000516576 104 ntBASIC-2.13□□□□□ -2.75
CHD9Q3L8U1 MIR548X2-201ENST00000579776 100 ntBASIC-2.13□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.350-201ENST00000365409 98 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 SNORA25.5-201ENST00000363782 126 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 RNU6-1160P-201ENST00000384546 104 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 RNU6-162P-201ENST00000516228 103 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 SNORA40.13-201ENST00000516379 120 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 MIR548AI-201ENST00000579940 88 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 U6.95-201ENST00000636931 70 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.15□□□□□ -2.75
CHD9Q3L8U1 MTND4P29-201ENST00000503122 1372 ntBASIC-2.15□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.15□□□□□ -2.75
CHD9Q3L8U1 MIR4795-201ENST00000584182 89 ntBASIC-2.15□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 RNU6-797P-201ENST00000363101 109 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.107-201ENST00000363190 121 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 MIR1254-1-201ENST00000408257 97 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 AL451105.1-201ENST00000450005 189 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 MIR3914-2-201ENST00000637339 95 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.290-201ENST00000364879 114 ntBASIC-2.17□□□□□ -2.76
CHD9Q3L8U1 MIR590-201ENST00000385008 97 ntBASIC-2.17□□□□□ -2.76
CHD9Q3L8U1 SNORD115-45-201ENST00000391078 81 ntBASIC-2.17□□□□□ -2.76
CHD9Q3L8U1 RNU6-1023P-201ENST00000516137 106 ntBASIC-2.17□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.422-201ENST00000384054 114 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-380P-201ENST00000410207 107 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-315P-201ENST00000362666 107 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.297-201ENST00000364950 91 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-497P-201ENST00000365316 104 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-267P-201ENST00000516714 103 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 TMSB4XP3-201ENST00000445144 114 ntBASIC-2.19□□□□□ -2.76
CHD9Q3L8U1 MIR548F4-201ENST00000408515 105 ntBASIC-2.19□□□□□ -2.76
CHD9Q3L8U1 AL589823.1-201ENST00000429577 183 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 SNORA40.16-201ENST00000517238 121 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 AC062037.1-201ENST00000605302 128 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.260-201ENST00000364628 101 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 SCARNA15.1-201ENST00000516384 125 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 RNU6-231P-201ENST00000517122 103 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 AC062037.2-201ENST00000610137 73 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.611-201ENST00000410682 108 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 MTND5P41-201ENST00000517498 206 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.69-201ENST00000362885 109 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.489-201ENST00000384410 101 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 RNU6-419P-201ENST00000517030 63 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 snoMBII-202.2-201ENST00000517263 86 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 AC004792.1-201ENST00000614523 137 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 SNORA20.1-201ENST00000364790 130 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 MTATP8P1-201ENST00000467115 207 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 MIR4801-201ENST00000582704 82 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.22□□□□□ -2.76
CHD9Q3L8U1 RNU6-663P-201ENST00000391105 106 ntBASIC-2.22□□□□□ -2.76
CHD9Q3L8U1 MIR1302-5-201ENST00000408164 150 ntBASIC-2.22□□□□□ -2.76
CHD9Q3L8U1 RNA5SP224-201ENST00000365069 126 ntBASIC-2.22□□□□□ -2.77
CHD9Q3L8U1 AL031737.1-201ENST00000450125 223 ntBASIC-2.22□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.712-201ENST00000517011 92 ntBASIC-2.22□□□□□ -2.77
CHD9Q3L8U1 RNU6-895P-201ENST00000384125 103 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.193-201ENST00000363979 102 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 RNU6-867P-201ENST00000364956 107 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 RNU6-109P-201ENST00000516364 107 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 RNU6-184P-201ENST00000516514 107 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 RNU7-120P-201ENST00000459334 63 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 AC008737.2-201ENST00000599446 118 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 SNORA63-201ENST00000363450 132 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.535-201ENST00000384612 99 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 MIR4484-201ENST00000582855 83 ntBASIC-2.25□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.216-201ENST00000364205 93 ntBASIC-2.26□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.218-201ENST00000364218 104 ntBASIC-2.26□□□□□ -2.77
CHD9Q3L8U1 MIR569-201ENST00000385228 96 ntBASIC-2.26□□□□□ -2.77
CHD9Q3L8U1 AL117351.2-201ENST00000513571 157 ntBASIC-2.26□□□□□ -2.77
CHD9Q3L8U1 RNU6-804P-201ENST00000384286 107 ntBASIC-2.27□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.165-201ENST00000363721 102 ntBASIC-2.27□□□□□ -2.77
CHD9Q3L8U1 RNU6-200P-201ENST00000364743 107 ntBASIC-2.27□□□□□ -2.77
CHD9Q3L8U1 MTCYBP9-201ENST00000431021 303 ntBASIC-2.27□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.219-201ENST00000364232 113 ntBASIC-2.28□□□□□ -2.77
CHD9Q3L8U1 RNU6-979P-201ENST00000383896 107 ntBASIC-2.28□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 539.6 ms