Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SNORD64-201ENST00000386683 67 ntBASIC-0.95□□□□□ -2.56
SMARCA1P28370 MIR3115-201ENST00000577915 68 ntBASIC-0.95□□□□□ -2.56
SMARCA1P28370 MIR365A-201ENST00000362260 87 ntBASIC-0.96□□□□□ -2.56
SMARCA1P28370 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.96□□□□□ -2.56
SMARCA1P28370 MIR548Q-201ENST00000408404 100 ntBASIC-0.97□□□□□ -2.56
SMARCA1P28370 SNORD83B-201ENST00000386745 93 ntBASIC-0.98□□□□□ -2.57
SMARCA1P28370 RNU6-172P-201ENST00000411000 93 ntBASIC-0.98□□□□□ -2.57
SMARCA1P28370 RNA5SP180-201ENST00000516181 101 ntBASIC-0.98□□□□□ -2.57
SMARCA1P28370 MIR548AA1-201ENST00000384971 97 ntBASIC-0.99□□□□□ -2.57
SMARCA1P28370 AL500527.2-201ENST00000454105 95 ntBASIC-0.99□□□□□ -2.57
SMARCA1P28370 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.99□□□□□ -2.57
SMARCA1P28370 MIR5683-201ENST00000636514 76 ntBASIC-0.99□□□□□ -2.57
SMARCA1P28370 RNU6-471P-201ENST00000383944 106 ntBASIC-1□□□□□ -2.57
SMARCA1P28370 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.01□□□□□ -2.57
SMARCA1P28370 AC110620.1-201ENST00000416042 228 ntBASIC-1.01□□□□□ -2.57
SMARCA1P28370 MIR4441-201ENST00000582623 100 ntBASIC-1.01□□□□□ -2.57
SMARCA1P28370 RNY4P27-201ENST00000363341 96 ntBASIC-1.03□□□□□ -2.57
SMARCA1P28370 RNU6-940P-201ENST00000363433 104 ntBASIC-1.03□□□□□ -2.57
SMARCA1P28370 MIR1285-2-201ENST00000408311 88 ntBASIC-1.04□□□□□ -2.58
SMARCA1P28370 RNU7-151P-201ENST00000516930 53 ntBASIC-1.04□□□□□ -2.58
SMARCA1P28370 MIR382-201ENST00000637119 76 ntBASIC-1.04□□□□□ -2.58
SMARCA1P28370 MIR579-201ENST00000385221 98 ntBASIC-1.05□□□□□ -2.58
SMARCA1P28370 RNU6-231P-201ENST00000517122 103 ntBASIC-1.05□□□□□ -2.58
SMARCA1P28370 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.06□□□□□ -2.58
SMARCA1P28370 MIR466-201ENST00000580653 84 ntBASIC-1.06□□□□□ -2.58
SMARCA1P28370 MIR7110-201ENST00000612638 86 ntBASIC-1.07□□□□□ -2.58
SMARCA1P28370 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.07□□□□□ -2.58
SMARCA1P28370 MIR520D-201ENST00000385002 87 ntBASIC-1.08□□□□□ -2.58
SMARCA1P28370 MIR4490-201ENST00000582647 84 ntBASIC-1.08□□□□□ -2.58
SMARCA1P28370 MIR3170-201ENST00000582699 77 ntBASIC-1.08□□□□□ -2.58
SMARCA1P28370 MIR7978-201ENST00000636158 59 ntBASIC-1.08□□□□□ -2.58
SMARCA1P28370 RNU6-669P-201ENST00000365575 107 ntBASIC-1.09□□□□□ -2.58
SMARCA1P28370 MIR507-201ENST00000385234 94 ntBASIC-1.09□□□□□ -2.58
SMARCA1P28370 RNU6-995P-201ENST00000391244 107 ntBASIC-1.1□□□□□ -2.59
SMARCA1P28370 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.1□□□□□ -2.59
SMARCA1P28370 MIR3165-201ENST00000579874 75 ntBASIC-1.1□□□□□ -2.59
SMARCA1P28370 MIR3938-201ENST00000582157 103 ntBASIC-1.1□□□□□ -2.59
SMARCA1P28370 RNA5SP26-201ENST00000362406 119 ntBASIC-1.11□□□□□ -2.59
SMARCA1P28370 RNU6-590P-201ENST00000365039 107 ntBASIC-1.11□□□□□ -2.59
SMARCA1P28370 SNORD116.2-201ENST00000391251 93 ntBASIC-1.12□□□□□ -2.59
SMARCA1P28370 snoU83B.1-201ENST00000517136 88 ntBASIC-1.13□□□□□ -2.59
SMARCA1P28370 RNU6-810P-201ENST00000364001 107 ntBASIC-1.14□□□□□ -2.59
SMARCA1P28370 RPL35AP4-201ENST00000412007 102 ntBASIC-1.14□□□□□ -2.59
SMARCA1P28370 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.15□□□□□ -2.59
SMARCA1P28370 RNU6-608P-201ENST00000383927 104 ntBASIC-1.15□□□□□ -2.59
SMARCA1P28370 MIR125B1-201ENST00000385236 88 ntBASIC-1.15□□□□□ -2.59
SMARCA1P28370 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.15□□□□□ -2.59
SMARCA1P28370 MIR4499-201ENST00000584834 69 ntBASIC-1.15□□□□□ -2.59
SMARCA1P28370 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.16□□□□□ -2.6
SMARCA1P28370 AC139453.2-201ENST00000487255 133 ntBASIC-1.16□□□□□ -2.6
SMARCA1P28370 uc_338.19-201ENST00000616808 99 ntBASIC-1.16□□□□□ -2.6
SMARCA1P28370 RNU7-119P-201ENST00000459279 63 ntBASIC-1.17□□□□□ -2.6
SMARCA1P28370 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.18□□□□□ -2.6
SMARCA1P28370 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.18□□□□□ -2.6
SMARCA1P28370 RNU7-160P-201ENST00000516660 62 ntBASIC-1.18□□□□□ -2.6
SMARCA1P28370 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.18□□□□□ -2.6
SMARCA1P28370 MIR29B1-201ENST00000385015 81 ntBASIC-1.19□□□□□ -2.6
SMARCA1P28370 AC125388.1-201ENST00000459631 156 ntBASIC-1.19□□□□□ -2.6
SMARCA1P28370 SNORA40.16-201ENST00000517238 121 ntBASIC-1.19□□□□□ -2.6
SMARCA1P28370 MIR4306-201ENST00000583390 91 ntBASIC-1.19□□□□□ -2.6
SMARCA1P28370 MIR6818-201ENST00000621576 65 ntBASIC-1.19□□□□□ -2.6
SMARCA1P28370 RNU6-247P-201ENST00000362636 107 ntBASIC-1.2□□□□□ -2.6
SMARCA1P28370 SNORA40B-201ENST00000385573 128 ntBASIC-1.2□□□□□ -2.6
SMARCA1P28370 RNU6-258P-201ENST00000390884 101 ntBASIC-1.2□□□□□ -2.6
SMARCA1P28370 RNU7-134P-201ENST00000458997 64 ntBASIC-1.21□□□□□ -2.6
SMARCA1P28370 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.22□□□□□ -2.6
SMARCA1P28370 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.22□□□□□ -2.6
SMARCA1P28370 AC090616.4-201ENST00000448026 115 ntBASIC-1.22□□□□□ -2.6
SMARCA1P28370 SNORD63.2-201ENST00000516303 64 ntBASIC-1.22□□□□□ -2.6
SMARCA1P28370 RNU6-520P-201ENST00000384717 104 ntBASIC-1.23□□□□□ -2.61
SMARCA1P28370 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.24□□□□□ -2.61
SMARCA1P28370 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.25□□□□□ -2.61
SMARCA1P28370 RNU6-974P-201ENST00000384099 108 ntBASIC-1.25□□□□□ -2.61
SMARCA1P28370 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.25□□□□□ -2.61
SMARCA1P28370 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.25□□□□□ -2.61
SMARCA1P28370 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.28□□□□□ -2.61
SMARCA1P28370 RNU6-828P-201ENST00000364876 107 ntBASIC-1.29□□□□□ -2.62
SMARCA1P28370 MIR1246-201ENST00000636535 73 ntBASIC-1.29□□□□□ -2.62
SMARCA1P28370 RNU6-446P-201ENST00000362827 106 ntBASIC-1.3□□□□□ -2.62
SMARCA1P28370 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.3□□□□□ -2.62
SMARCA1P28370 RNU6-706P-201ENST00000517229 104 ntBASIC-1.31□□□□□ -2.62
SMARCA1P28370 SNORA27.2-201ENST00000363365 126 ntBASIC-1.32□□□□□ -2.62
SMARCA1P28370 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.33□□□□□ -2.62
SMARCA1P28370 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.33□□□□□ -2.62
SMARCA1P28370 RNU6-164P-201ENST00000364604 103 ntBASIC-1.34□□□□□ -2.62
SMARCA1P28370 MIR633-201ENST00000384821 98 ntBASIC-1.35□□□□□ -2.63
SMARCA1P28370 RNU6-226P-201ENST00000363778 107 ntBASIC-1.36□□□□□ -2.63
SMARCA1P28370 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.37□□□□□ -2.63
SMARCA1P28370 MIR23C-201ENST00000579846 100 ntBASIC-1.37□□□□□ -2.63
SMARCA1P28370 RNU6-576P-201ENST00000390854 102 ntBASIC-1.38□□□□□ -2.63
SMARCA1P28370 RNU6-829P-201ENST00000363700 112 ntBASIC-1.39□□□□□ -2.63
SMARCA1P28370 RNY4P7-201ENST00000364600 96 ntBASIC-1.41□□□□□ -2.64
SMARCA1P28370 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.42□□□□□ -2.64
SMARCA1P28370 RNU6-788P-201ENST00000390967 104 ntBASIC-1.42□□□□□ -2.64
SMARCA1P28370 HLA-S-202ENST00000425174 53 ntBASIC-1.42□□□□□ -2.64
SMARCA1P28370 MIR8485-201ENST00000401372 91 ntBASIC-1.43□□□□□ -2.64
SMARCA1P28370 AC091912.2-201ENST00000624798 167 ntBASIC-1.43□□□□□ -2.64
SMARCA1P28370 MIR6874-201ENST00000635894 71 ntBASIC-1.43□□□□□ -2.64
SMARCA1P28370 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.44□□□□□ -2.64
SMARCA1P28370 SNORD113-4-201ENST00000364802 75 ntBASIC-1.44□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 171.1 ms