Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-46P-201ENST00000383860 107 ntBASIC0.09□□□□□ -2.4
CHMP3Q9Y3E7 SNORD63.1-201ENST00000516178 80 ntBASIC0.09□□□□□ -2.4
CHMP3Q9Y3E7 Y_RNA.69-201ENST00000362885 109 ntBASIC0.08□□□□□ -2.4
CHMP3Q9Y3E7 RNU6-1238P-201ENST00000517215 102 ntBASIC0.08□□□□□ -2.4
CHMP3Q9Y3E7 MIR4290-201ENST00000583807 95 ntBASIC0.08□□□□□ -2.4
CHMP3Q9Y3E7 RNU6-995P-201ENST00000391244 107 ntBASIC0.07□□□□□ -2.4
CHMP3Q9Y3E7 RNU6-732P-201ENST00000516033 103 ntBASIC0.07□□□□□ -2.4
CHMP3Q9Y3E7 MIR548X-201ENST00000580069 75 ntBASIC0.07□□□□□ -2.4
CHMP3Q9Y3E7 Y_RNA.379-201ENST00000365653 102 ntBASIC0.05□□□□□ -2.4
CHMP3Q9Y3E7 RNU7-160P-201ENST00000516660 62 ntBASIC0.05□□□□□ -2.4
CHMP3Q9Y3E7 RNU6-753P-201ENST00000363926 107 ntBASIC0.04□□□□□ -2.4
CHMP3Q9Y3E7 RNU4-33P-201ENST00000364316 85 ntBASIC0.04□□□□□ -2.4
CHMP3Q9Y3E7 MIR125B1-201ENST00000385236 88 ntBASIC0.04□□□□□ -2.4
CHMP3Q9Y3E7 RNU6-1206P-201ENST00000516339 103 ntBASIC0.04□□□□□ -2.4
CHMP3Q9Y3E7 MIR6851-201ENST00000617060 67 ntBASIC0.04□□□□□ -2.4
CHMP3Q9Y3E7 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
CHMP3Q9Y3E7 AL590491.3-201ENST00000610731 82 ntBASIC0.03□□□□□ -2.4
CHMP3Q9Y3E7 RNU6-419P-201ENST00000517030 63 ntBASIC0.02□□□□□ -2.41
CHMP3Q9Y3E7 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
CHMP3Q9Y3E7 MIR5190-201ENST00000581537 80 ntBASIC0.02□□□□□ -2.41
CHMP3Q9Y3E7 SNORD114-12-201ENST00000365400 75 ntBASIC0.01□□□□□ -2.41
CHMP3Q9Y3E7 RNU4-88P-201ENST00000411220 86 ntBASIC0□□□□□ -2.41
CHMP3Q9Y3E7 RNA5SP66-201ENST00000517178 101 ntBASIC0□□□□□ -2.41
CHMP3Q9Y3E7 RNA5SP257-201ENST00000363023 116 ntBASIC-0.01□□□□□ -2.41
CHMP3Q9Y3E7 RNU6-974P-201ENST00000384099 108 ntBASIC-0.01□□□□□ -2.41
CHMP3Q9Y3E7 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.02□□□□□ -2.41
CHMP3Q9Y3E7 MIR329-2-201ENST00000385029 84 ntBASIC-0.02□□□□□ -2.41
CHMP3Q9Y3E7 SNORD19-201ENST00000391191 68 ntBASIC-0.02□□□□□ -2.41
CHMP3Q9Y3E7 MIR3170-201ENST00000582699 77 ntBASIC-0.02□□□□□ -2.41
CHMP3Q9Y3E7 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.02□□□□□ -2.41
CHMP3Q9Y3E7 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.03□□□□□ -2.41
CHMP3Q9Y3E7 RNU6-35P-201ENST00000384530 107 ntBASIC-0.04□□□□□ -2.42
CHMP3Q9Y3E7 MIR548Q-201ENST00000408404 100 ntBASIC-0.04□□□□□ -2.42
CHMP3Q9Y3E7 SNORD18.2-201ENST00000459604 70 ntBASIC-0.04□□□□□ -2.42
CHMP3Q9Y3E7 AC104692.1-201ENST00000472406 90 ntBASIC-0.04□□□□□ -2.42
CHMP3Q9Y3E7 RNU6-828P-201ENST00000364876 107 ntBASIC-0.05□□□□□ -2.42
CHMP3Q9Y3E7 MIR4768-201ENST00000585270 74 ntBASIC-0.05□□□□□ -2.42
CHMP3Q9Y3E7 AC093726.3-201ENST00000637588 150 ntBASIC-0.05□□□□□ -2.42
CHMP3Q9Y3E7 SNORD114-16-201ENST00000363044 70 ntBASIC-0.06□□□□□ -2.42
CHMP3Q9Y3E7 SNORD22.1-201ENST00000516331 125 ntBASIC-0.06□□□□□ -2.42
CHMP3Q9Y3E7 SNORD63.2-201ENST00000516303 64 ntBASIC-0.07□□□□□ -2.42
CHMP3Q9Y3E7 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-0.07□□□□□ -2.42
CHMP3Q9Y3E7 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
CHMP3Q9Y3E7 RNA5SP169-201ENST00000517268 117 ntBASIC-0.08□□□□□ -2.42
CHMP3Q9Y3E7 AP002795.1-201ENST00000534879 84 ntBASIC-0.08□□□□□ -2.42
CHMP3Q9Y3E7 MIR520D-201ENST00000385002 87 ntBASIC-0.09□□□□□ -2.42
CHMP3Q9Y3E7 RNU6-247P-201ENST00000362636 107 ntBASIC-0.1□□□□□ -2.43
CHMP3Q9Y3E7 SNORA18.1-201ENST00000363418 128 ntBASIC-0.1□□□□□ -2.43
CHMP3Q9Y3E7 SNORD114-11-201ENST00000363738 75 ntBASIC-0.1□□□□□ -2.43
CHMP3Q9Y3E7 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.1□□□□□ -2.43
CHMP3Q9Y3E7 MIR518B-201ENST00000385127 83 ntBASIC-0.1□□□□□ -2.43
CHMP3Q9Y3E7 MIR4263-201ENST00000584745 83 ntBASIC-0.1□□□□□ -2.43
CHMP3Q9Y3E7 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.11□□□□□ -2.43
CHMP3Q9Y3E7 RNU6-258P-201ENST00000390884 101 ntBASIC-0.12□□□□□ -2.43
CHMP3Q9Y3E7 MIR3666-201ENST00000607845 111 ntBASIC-0.12□□□□□ -2.43
CHMP3Q9Y3E7 MIR4788-201ENST00000639104 80 ntBASIC-0.12□□□□□ -2.43
CHMP3Q9Y3E7 SNORD74.6-201ENST00000364796 70 ntBASIC-0.13□□□□□ -2.43
CHMP3Q9Y3E7 AL451105.1-201ENST00000450005 189 ntBASIC-0.14□□□□□ -2.43
CHMP3Q9Y3E7 SNORD4A-201ENST00000459174 72 ntBASIC-0.15□□□□□ -2.43
CHMP3Q9Y3E7 MIR371B-201ENST00000638082 66 ntBASIC-0.15□□□□□ -2.43
CHMP3Q9Y3E7 MIR204-201ENST00000385200 110 ntBASIC-0.16□□□□□ -2.44
CHMP3Q9Y3E7 SNORA26.4-201ENST00000391188 123 ntBASIC-0.16□□□□□ -2.44
CHMP3Q9Y3E7 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.16□□□□□ -2.44
CHMP3Q9Y3E7 SNORD75.1-201ENST00000408373 60 ntBASIC-0.16□□□□□ -2.44
CHMP3Q9Y3E7 AP000533.3-201ENST00000447704 118 ntBASIC-0.16□□□□□ -2.44
CHMP3Q9Y3E7 MIR3179-1-201ENST00000578940 84 ntBASIC-0.17□□□□□ -2.44
CHMP3Q9Y3E7 MIR3179-2-201ENST00000579107 84 ntBASIC-0.17□□□□□ -2.44
CHMP3Q9Y3E7 MIR3179-3-201ENST00000579566 84 ntBASIC-0.17□□□□□ -2.44
CHMP3Q9Y3E7 MIR3179-4-201ENST00000617599 84 ntBASIC-0.17□□□□□ -2.44
CHMP3Q9Y3E7 MIR1295B-201ENST00000636144 60 ntBASIC-0.17□□□□□ -2.44
CHMP3Q9Y3E7 SNORD114-17-201ENST00000364699 75 ntBASIC-0.18□□□□□ -2.44
CHMP3Q9Y3E7 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.18□□□□□ -2.44
CHMP3Q9Y3E7 RNA5SP300-201ENST00000391197 107 ntBASIC-0.19□□□□□ -2.44
CHMP3Q9Y3E7 RNU6-930P-201ENST00000390938 100 ntBASIC-0.2□□□□□ -2.44
CHMP3Q9Y3E7 RNU6-721P-201ENST00000410155 105 ntBASIC-0.2□□□□□ -2.44
CHMP3Q9Y3E7 MIR5683-201ENST00000636514 76 ntBASIC-0.2□□□□□ -2.44
CHMP3Q9Y3E7 AL353691.2-201ENST00000443795 59 ntBASIC-0.22□□□□□ -2.44
CHMP3Q9Y3E7 SNORD115-33-201ENST00000363723 82 ntBASIC-0.23□□□□□ -2.45
CHMP3Q9Y3E7 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.24□□□□□ -2.45
CHMP3Q9Y3E7 DLEU2_4.2-201ENST00000616613 58 ntBASIC-0.24□□□□□ -2.45
CHMP3Q9Y3E7 MIR548F3-201ENST00000408509 87 ntBASIC-0.25□□□□□ -2.45
CHMP3Q9Y3E7 RNA5SP285-201ENST00000516619 119 ntBASIC-0.25□□□□□ -2.45
CHMP3Q9Y3E7 RNU6-838P-201ENST00000363399 108 ntBASIC-0.26□□□□□ -2.45
CHMP3Q9Y3E7 MIR29B1-201ENST00000385015 81 ntBASIC-0.26□□□□□ -2.45
CHMP3Q9Y3E7 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.26□□□□□ -2.45
CHMP3Q9Y3E7 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.27□□□□□ -2.45
CHMP3Q9Y3E7 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.27□□□□□ -2.45
CHMP3Q9Y3E7 RNU6-608P-201ENST00000383927 104 ntBASIC-0.28□□□□□ -2.45
CHMP3Q9Y3E7 RNU6-530P-201ENST00000391180 107 ntBASIC-0.28□□□□□ -2.45
CHMP3Q9Y3E7 MIR6759-201ENST00000638110 65 ntBASIC-0.29□□□□□ -2.46
CHMP3Q9Y3E7 MIR1468-201ENST00000410600 86 ntBASIC-0.3□□□□□ -2.46
CHMP3Q9Y3E7 SNORA13-201ENST00000458790 133 ntBASIC-0.3□□□□□ -2.46
CHMP3Q9Y3E7 SNORD45.2-201ENST00000363552 72 ntBASIC-0.31□□□□□ -2.46
CHMP3Q9Y3E7 RPL35AP4-201ENST00000412007 102 ntBASIC-0.31□□□□□ -2.46
CHMP3Q9Y3E7 SNORA27.2-201ENST00000363365 126 ntBASIC-0.32□□□□□ -2.46
CHMP3Q9Y3E7 SNORA32.1-201ENST00000364514 115 ntBASIC-0.33□□□□□ -2.46
CHMP3Q9Y3E7 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.34□□□□□ -2.46
CHMP3Q9Y3E7 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.35□□□□□ -2.47
CHMP3Q9Y3E7 MIR548AL-201ENST00000578416 97 ntBASIC-0.35□□□□□ -2.47
CHMP3Q9Y3E7 RNU6-742P-201ENST00000365289 107 ntBASIC-0.36□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 216.5 ms