Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU7-88P-201ENST00000458752 63 ntBASIC0.2□□□□□ -2.38
LIMD1Q9UGP4 SNORD49B-201ENST00000365172 72 ntBASIC0.19□□□□□ -2.38
LIMD1Q9UGP4 SNORD56B-201ENST00000384713 71 ntBASIC0.19□□□□□ -2.38
LIMD1Q9UGP4 RNU7-151P-201ENST00000516930 53 ntBASIC0.19□□□□□ -2.38
LIMD1Q9UGP4 MIR4636-201ENST00000582271 80 ntBASIC0.19□□□□□ -2.38
LIMD1Q9UGP4 MIR4490-201ENST00000582647 84 ntBASIC0.19□□□□□ -2.38
LIMD1Q9UGP4 MIR8068-201ENST00000618032 68 ntBASIC0.19□□□□□ -2.38
LIMD1Q9UGP4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.18□□□□□ -2.38
LIMD1Q9UGP4 SNORD63.1-201ENST00000516178 80 ntBASIC0.18□□□□□ -2.38
LIMD1Q9UGP4 RNU6-980P-201ENST00000516925 103 ntBASIC0.18□□□□□ -2.38
LIMD1Q9UGP4 MIR655-201ENST00000362159 97 ntBASIC0.17□□□□□ -2.38
LIMD1Q9UGP4 Y_RNA.379-201ENST00000365653 102 ntBASIC0.17□□□□□ -2.38
LIMD1Q9UGP4 SNORD57-201ENST00000448188 72 ntBASIC0.17□□□□□ -2.38
LIMD1Q9UGP4 RNU6-1174P-201ENST00000517278 101 ntBASIC0.17□□□□□ -2.38
LIMD1Q9UGP4 MIR548X-201ENST00000580069 75 ntBASIC0.17□□□□□ -2.38
LIMD1Q9UGP4 RNU6-929P-201ENST00000384429 107 ntBASIC0.14□□□□□ -2.39
LIMD1Q9UGP4 AC114755.3-201ENST00000481111 251 ntBASIC0.14□□□□□ -2.39
LIMD1Q9UGP4 MIR1295B-201ENST00000636144 60 ntBASIC0.14□□□□□ -2.39
LIMD1Q9UGP4 RNU6-753P-201ENST00000363926 107 ntBASIC0.13□□□□□ -2.39
LIMD1Q9UGP4 RNU4-33P-201ENST00000364316 85 ntBASIC0.13□□□□□ -2.39
LIMD1Q9UGP4 MIR124-2-201ENST00000385081 109 ntBASIC0.13□□□□□ -2.39
LIMD1Q9UGP4 RNU6-1267P-201ENST00000410747 107 ntBASIC0.13□□□□□ -2.39
LIMD1Q9UGP4 AL445193.1-201ENST00000441183 141 ntBASIC0.13□□□□□ -2.39
LIMD1Q9UGP4 MIR4802-201ENST00000581881 80 ntBASIC0.13□□□□□ -2.39
LIMD1Q9UGP4 Y_RNA.69-201ENST00000362885 109 ntBASIC0.12□□□□□ -2.39
LIMD1Q9UGP4 RNU6-1206P-201ENST00000516339 103 ntBASIC0.12□□□□□ -2.39
LIMD1Q9UGP4 MIR5589-201ENST00000579442 60 ntBASIC0.12□□□□□ -2.39
LIMD1Q9UGP4 MIR4290-201ENST00000583807 95 ntBASIC0.12□□□□□ -2.39
LIMD1Q9UGP4 MIR4263-201ENST00000584745 83 ntBASIC0.12□□□□□ -2.39
LIMD1Q9UGP4 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
LIMD1Q9UGP4 RNU4-88P-201ENST00000411220 86 ntBASIC0.11□□□□□ -2.39
LIMD1Q9UGP4 RNU6-419P-201ENST00000517030 63 ntBASIC0.11□□□□□ -2.39
LIMD1Q9UGP4 MIR4280-201ENST00000582178 76 ntBASIC0.11□□□□□ -2.39
LIMD1Q9UGP4 RNU6-828P-201ENST00000364876 107 ntBASIC0.1□□□□□ -2.39
LIMD1Q9UGP4 MIR125B1-201ENST00000385236 88 ntBASIC0.1□□□□□ -2.39
LIMD1Q9UGP4 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC0.1□□□□□ -2.39
LIMD1Q9UGP4 SNORD74.6-201ENST00000364796 70 ntBASIC0.09□□□□□ -2.4
LIMD1Q9UGP4 RNU6-1238P-201ENST00000517215 102 ntBASIC0.09□□□□□ -2.4
LIMD1Q9UGP4 RNU6-732P-201ENST00000516033 103 ntBASIC0.08□□□□□ -2.4
LIMD1Q9UGP4 RNA5SP66-201ENST00000517178 101 ntBASIC0.08□□□□□ -2.4
LIMD1Q9UGP4 MIR4768-201ENST00000585270 74 ntBASIC0.08□□□□□ -2.4
LIMD1Q9UGP4 MIR6851-201ENST00000617060 67 ntBASIC0.08□□□□□ -2.4
LIMD1Q9UGP4 SNORA18.1-201ENST00000363418 128 ntBASIC0.07□□□□□ -2.4
LIMD1Q9UGP4 SNORD38.3-201ENST00000516599 73 ntBASIC0.06□□□□□ -2.4
LIMD1Q9UGP4 RNU6-1233P-201ENST00000362922 102 ntBASIC0.05□□□□□ -2.4
LIMD1Q9UGP4 Y_RNA.139-201ENST00000363464 102 ntBASIC0.04□□□□□ -2.4
LIMD1Q9UGP4 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
LIMD1Q9UGP4 MIR3170-201ENST00000582699 77 ntBASIC0.04□□□□□ -2.4
LIMD1Q9UGP4 AC093726.3-201ENST00000637588 150 ntBASIC0.04□□□□□ -2.4
LIMD1Q9UGP4 AL590491.3-201ENST00000610731 82 ntBASIC0.03□□□□□ -2.4
LIMD1Q9UGP4 SNORD114-16-201ENST00000363044 70 ntBASIC0.02□□□□□ -2.41
LIMD1Q9UGP4 SNORD19-201ENST00000391191 68 ntBASIC0.02□□□□□ -2.41
LIMD1Q9UGP4 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
LIMD1Q9UGP4 MTRNR2L9-201ENST00000622562 75 ntBASIC0.02□□□□□ -2.41
LIMD1Q9UGP4 MIR371B-201ENST00000638082 66 ntBASIC0.02□□□□□ -2.41
LIMD1Q9UGP4 SNORD114-12-201ENST00000365400 75 ntBASIC0.01□□□□□ -2.41
LIMD1Q9UGP4 MIR548Q-201ENST00000408404 100 ntBASIC0.01□□□□□ -2.41
LIMD1Q9UGP4 SNORD18.2-201ENST00000459604 70 ntBASIC0.01□□□□□ -2.41
LIMD1Q9UGP4 SNORD63.2-201ENST00000516303 64 ntBASIC0.01□□□□□ -2.41
LIMD1Q9UGP4 MIR3666-201ENST00000607845 111 ntBASIC0.01□□□□□ -2.41
LIMD1Q9UGP4 RNU6-247P-201ENST00000362636 107 ntBASIC0□□□□□ -2.41
LIMD1Q9UGP4 RNU6-974P-201ENST00000384099 108 ntBASIC0□□□□□ -2.41
LIMD1Q9UGP4 RNU6-1111P-201ENST00000391118 107 ntBASIC0□□□□□ -2.41
LIMD1Q9UGP4 AL451105.1-201ENST00000450005 189 ntBASIC0□□□□□ -2.41
LIMD1Q9UGP4 SNORD45.2-201ENST00000363552 72 ntBASIC-0.01□□□□□ -2.41
LIMD1Q9UGP4 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.01□□□□□ -2.41
LIMD1Q9UGP4 RNU6-930P-201ENST00000390938 100 ntBASIC-0.01□□□□□ -2.41
LIMD1Q9UGP4 SNORA13-201ENST00000458790 133 ntBASIC-0.01□□□□□ -2.41
LIMD1Q9UGP4 MIR518B-201ENST00000385127 83 ntBASIC-0.02□□□□□ -2.41
LIMD1Q9UGP4 SNORD22.1-201ENST00000516331 125 ntBASIC-0.02□□□□□ -2.41
LIMD1Q9UGP4 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.03□□□□□ -2.41
LIMD1Q9UGP4 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
LIMD1Q9UGP4 DLEU2_4.2-201ENST00000616613 58 ntBASIC-0.03□□□□□ -2.41
LIMD1Q9UGP4 MIR520D-201ENST00000385002 87 ntBASIC-0.04□□□□□ -2.42
LIMD1Q9UGP4 RNU6-838P-201ENST00000363399 108 ntBASIC-0.05□□□□□ -2.42
LIMD1Q9UGP4 SNORA26.4-201ENST00000391188 123 ntBASIC-0.05□□□□□ -2.42
LIMD1Q9UGP4 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.06□□□□□ -2.42
LIMD1Q9UGP4 MIR548F3-201ENST00000408509 87 ntBASIC-0.06□□□□□ -2.42
LIMD1Q9UGP4 AP002795.1-201ENST00000534879 84 ntBASIC-0.06□□□□□ -2.42
LIMD1Q9UGP4 SNORD114-31-201ENST00000363219 75 ntBASIC-0.07□□□□□ -2.42
LIMD1Q9UGP4 MIR204-201ENST00000385200 110 ntBASIC-0.07□□□□□ -2.42
LIMD1Q9UGP4 RNU6-258P-201ENST00000390884 101 ntBASIC-0.07□□□□□ -2.42
LIMD1Q9UGP4 SNORD75.1-201ENST00000408373 60 ntBASIC-0.07□□□□□ -2.42
LIMD1Q9UGP4 SNORD4A-201ENST00000459174 72 ntBASIC-0.07□□□□□ -2.42
LIMD1Q9UGP4 IGLVI-20-201ENST00000519296 130 ntBASIC-0.07□□□□□ -2.42
LIMD1Q9UGP4 MIR4788-201ENST00000639104 80 ntBASIC-0.07□□□□□ -2.42
LIMD1Q9UGP4 AL353691.2-201ENST00000443795 59 ntBASIC-0.08□□□□□ -2.42
LIMD1Q9UGP4 RNA5SP169-201ENST00000517268 117 ntBASIC-0.08□□□□□ -2.42
LIMD1Q9UGP4 MIR3179-1-201ENST00000578940 84 ntBASIC-0.08□□□□□ -2.42
LIMD1Q9UGP4 MIR3179-2-201ENST00000579107 84 ntBASIC-0.08□□□□□ -2.42
LIMD1Q9UGP4 MIR3179-3-201ENST00000579566 84 ntBASIC-0.08□□□□□ -2.42
LIMD1Q9UGP4 MIR3179-4-201ENST00000617599 84 ntBASIC-0.08□□□□□ -2.42
LIMD1Q9UGP4 SNORD115-33-201ENST00000363723 82 ntBASIC-0.09□□□□□ -2.42
LIMD1Q9UGP4 SNORD114-11-201ENST00000363738 75 ntBASIC-0.09□□□□□ -2.42
LIMD1Q9UGP4 RNA5SP300-201ENST00000391197 107 ntBASIC-0.09□□□□□ -2.42
LIMD1Q9UGP4 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.09□□□□□ -2.42
LIMD1Q9UGP4 MIR4493-201ENST00000584016 73 ntBASIC-0.09□□□□□ -2.42
LIMD1Q9UGP4 AL627230.5-201ENST00000619807 58 ntBASIC-0.09□□□□□ -2.42
LIMD1Q9UGP4 MIR5683-201ENST00000636514 76 ntBASIC-0.09□□□□□ -2.42
LIMD1Q9UGP4 AP000533.3-201ENST00000447704 118 ntBASIC-0.1□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms