Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNU6-982P-201ENST00000516216 102 ntBASIC-1.69□□□□□ -2.68
SHANK3Q9BYB0 RNU6-81P-201ENST00000365608 104 ntBASIC-1.7□□□□□ -2.68
SHANK3Q9BYB0 RNU6-608P-201ENST00000383927 104 ntBASIC-1.7□□□□□ -2.68
SHANK3Q9BYB0 RNU6-540P-201ENST00000384622 101 ntBASIC-1.7□□□□□ -2.68
SHANK3Q9BYB0 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.7□□□□□ -2.68
SHANK3Q9BYB0 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.7□□□□□ -2.68
SHANK3Q9BYB0 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.7□□□□□ -2.68
SHANK3Q9BYB0 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.71□□□□□ -2.68
SHANK3Q9BYB0 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.71□□□□□ -2.68
SHANK3Q9BYB0 AL031737.1-201ENST00000450125 223 ntBASIC-1.71□□□□□ -2.68
SHANK3Q9BYB0 SNORD113.1-201ENST00000363280 73 ntBASIC-1.72□□□□□ -2.69
SHANK3Q9BYB0 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.72□□□□□ -2.69
SHANK3Q9BYB0 SNORD116-16-201ENST00000384533 92 ntBASIC-1.72□□□□□ -2.69
SHANK3Q9BYB0 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.72□□□□□ -2.69
SHANK3Q9BYB0 RNA5SP173-201ENST00000364857 136 ntBASIC-1.73□□□□□ -2.69
SHANK3Q9BYB0 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.73□□□□□ -2.69
SHANK3Q9BYB0 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.73□□□□□ -2.69
SHANK3Q9BYB0 AC120024.2-201ENST00000576526 175 ntBASIC-1.73□□□□□ -2.69
SHANK3Q9BYB0 RNU6-330P-201ENST00000363015 107 ntBASIC-1.74□□□□□ -2.69
SHANK3Q9BYB0 AC090425.1-201ENST00000610007 140 ntBASIC-1.74□□□□□ -2.69
SHANK3Q9BYB0 RNU6-668P-201ENST00000364180 107 ntBASIC-1.74□□□□□ -2.69
SHANK3Q9BYB0 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.75□□□□□ -2.69
SHANK3Q9BYB0 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.75□□□□□ -2.69
SHANK3Q9BYB0 RNU6-219P-201ENST00000364728 107 ntBASIC-1.75□□□□□ -2.69
SHANK3Q9BYB0 RNU6-497P-201ENST00000365316 104 ntBASIC-1.75□□□□□ -2.69
SHANK3Q9BYB0 RNU6-22P-201ENST00000384355 107 ntBASIC-1.75□□□□□ -2.69
SHANK3Q9BYB0 MIR3170-201ENST00000582699 77 ntBASIC-1.75□□□□□ -2.69
SHANK3Q9BYB0 MIR3133-201ENST00000583157 78 ntBASIC-1.75□□□□□ -2.69
SHANK3Q9BYB0 MIR548BB-201ENST00000626714 66 ntBASIC-1.75□□□□□ -2.69
SHANK3Q9BYB0 RNU6-247P-201ENST00000362636 107 ntBASIC-1.76□□□□□ -2.69
SHANK3Q9BYB0 RNU6-598P-201ENST00000364017 105 ntBASIC-1.76□□□□□ -2.69
SHANK3Q9BYB0 RNU6-402P-201ENST00000410678 103 ntBASIC-1.76□□□□□ -2.69
SHANK3Q9BYB0 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.77□□□□□ -2.69
SHANK3Q9BYB0 RNA5SP86-201ENST00000390869 98 ntBASIC-1.77□□□□□ -2.69
SHANK3Q9BYB0 RNU6-604P-201ENST00000390917 100 ntBASIC-1.77□□□□□ -2.69
SHANK3Q9BYB0 RNU6-267P-201ENST00000516714 103 ntBASIC-1.77□□□□□ -2.69
SHANK3Q9BYB0 U2.18-201ENST00000622185 84 ntBASIC-1.77□□□□□ -2.69
SHANK3Q9BYB0 RNU6-841P-201ENST00000383872 107 ntBASIC-1.78□□□□□ -2.69
SHANK3Q9BYB0 RNU6-209P-201ENST00000384118 107 ntBASIC-1.78□□□□□ -2.69
SHANK3Q9BYB0 MALAT1.1-201ENST00000618249 95 ntBASIC-1.78□□□□□ -2.69
SHANK3Q9BYB0 SNORA27.2-201ENST00000363365 126 ntBASIC-1.79□□□□□ -2.7
SHANK3Q9BYB0 RNU6-675P-201ENST00000384236 104 ntBASIC-1.79□□□□□ -2.7
SHANK3Q9BYB0 MIR520D-201ENST00000385002 87 ntBASIC-1.8□□□□□ -2.7
SHANK3Q9BYB0 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.8□□□□□ -2.7
SHANK3Q9BYB0 RNU7-151P-201ENST00000516930 53 ntBASIC-1.8□□□□□ -2.7
SHANK3Q9BYB0 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.81□□□□□ -2.7
SHANK3Q9BYB0 RNU6-995P-201ENST00000391244 107 ntBASIC-1.81□□□□□ -2.7
SHANK3Q9BYB0 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.81□□□□□ -2.7
SHANK3Q9BYB0 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.82□□□□□ -2.7
SHANK3Q9BYB0 AL365222.1-201ENST00000614661 98 ntBASIC-1.82□□□□□ -2.7
SHANK3Q9BYB0 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.83□□□□□ -2.7
SHANK3Q9BYB0 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.83□□□□□ -2.7
SHANK3Q9BYB0 RNU6-542P-201ENST00000516405 103 ntBASIC-1.83□□□□□ -2.7
SHANK3Q9BYB0 MIR450A1-201ENST00000362262 91 ntBASIC-1.83□□□□□ -2.7
SHANK3Q9BYB0 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.83□□□□□ -2.7
SHANK3Q9BYB0 snosnR66.1-201ENST00000391095 99 ntBASIC-1.83□□□□□ -2.7
SHANK3Q9BYB0 RNU6-315P-201ENST00000362666 107 ntBASIC-1.84□□□□□ -2.7
SHANK3Q9BYB0 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.84□□□□□ -2.7
SHANK3Q9BYB0 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.84□□□□□ -2.7
SHANK3Q9BYB0 MIR548M-201ENST00000408260 86 ntBASIC-1.84□□□□□ -2.7
SHANK3Q9BYB0 SNORA63.4-201ENST00000362763 126 ntBASIC-1.85□□□□□ -2.71
SHANK3Q9BYB0 MIR154-201ENST00000385243 84 ntBASIC-1.85□□□□□ -2.71
SHANK3Q9BYB0 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.86□□□□□ -2.71
SHANK3Q9BYB0 SNORA41B-201ENST00000384785 128 ntBASIC-1.86□□□□□ -2.71
SHANK3Q9BYB0 MIR548AM-201ENST00000584298 74 ntBASIC-1.86□□□□□ -2.71
SHANK3Q9BYB0 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.86□□□□□ -2.71
SHANK3Q9BYB0 SNORD18.1-201ENST00000363807 70 ntBASIC-1.87□□□□□ -2.71
SHANK3Q9BYB0 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.87□□□□□ -2.71
SHANK3Q9BYB0 MIR3123-201ENST00000583417 75 ntBASIC-1.87□□□□□ -2.71
SHANK3Q9BYB0 SNORD1B-201ENST00000363091 84 ntBASIC-1.88□□□□□ -2.71
SHANK3Q9BYB0 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.88□□□□□ -2.71
SHANK3Q9BYB0 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.88□□□□□ -2.71
SHANK3Q9BYB0 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.88□□□□□ -2.71
SHANK3Q9BYB0 RNY1P1-201ENST00000364372 112 ntBASIC-1.88□□□□□ -2.71
SHANK3Q9BYB0 RNU6-669P-201ENST00000365575 107 ntBASIC-1.88□□□□□ -2.71
SHANK3Q9BYB0 SNORD45A-201ENST00000384512 84 ntBASIC-1.88□□□□□ -2.71
SHANK3Q9BYB0 RNU6-70P-201ENST00000516438 60 ntBASIC-1.88□□□□□ -2.71
SHANK3Q9BYB0 RNU6-980P-201ENST00000516925 103 ntBASIC-1.88□□□□□ -2.71
SHANK3Q9BYB0 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.89□□□□□ -2.71
SHANK3Q9BYB0 SNORD60-201ENST00000383903 83 ntBASIC-1.89□□□□□ -2.71
SHANK3Q9BYB0 AC005520.4-201ENST00000604337 90 ntBASIC-1.89□□□□□ -2.71
SHANK3Q9BYB0 MIR3671-201ENST00000580455 88 ntBASIC-1.9□□□□□ -2.71
SHANK3Q9BYB0 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.9□□□□□ -2.71
SHANK3Q9BYB0 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.91□□□□□ -2.71
SHANK3Q9BYB0 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.91□□□□□ -2.71
SHANK3Q9BYB0 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.91□□□□□ -2.71
SHANK3Q9BYB0 MIR7978-201ENST00000636158 59 ntBASIC-1.91□□□□□ -2.71
SHANK3Q9BYB0 RNU6-563P-201ENST00000364872 108 ntBASIC-1.91□□□□□ -2.72
SHANK3Q9BYB0 RNU6-118P-201ENST00000516552 102 ntBASIC-1.91□□□□□ -2.72
SHANK3Q9BYB0 RNU6-979P-201ENST00000383896 107 ntBASIC-1.92□□□□□ -2.72
SHANK3Q9BYB0 RNU6-32P-201ENST00000383948 107 ntBASIC-1.92□□□□□ -2.72
SHANK3Q9BYB0 RNU6-13P-201ENST00000384248 107 ntBASIC-1.92□□□□□ -2.72
SHANK3Q9BYB0 RNU6-12P-201ENST00000384604 107 ntBASIC-1.92□□□□□ -2.72
SHANK3Q9BYB0 RNU6-41P-201ENST00000384741 107 ntBASIC-1.92□□□□□ -2.72
SHANK3Q9BYB0 RNU6-844P-201ENST00000517175 102 ntBASIC-1.92□□□□□ -2.72
SHANK3Q9BYB0 IGLL4P-201ENST00000614590 133 ntBASIC-1.92□□□□□ -2.72
SHANK3Q9BYB0 AC108019.1-201ENST00000512540 175 ntBASIC-1.93□□□□□ -2.72
SHANK3Q9BYB0 MIR4484-201ENST00000582855 83 ntBASIC-1.93□□□□□ -2.72
SHANK3Q9BYB0 MIR664A-201ENST00000626086 82 ntBASIC-1.93□□□□□ -2.72
SHANK3Q9BYB0 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.93□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 237.1 ms