Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MIR4464-201ENST00000580818 92 ntBASIC-0.94□□□□□ -2.56
TRAIPQ9BWF2 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.95□□□□□ -2.56
TRAIPQ9BWF2 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.95□□□□□ -2.56
TRAIPQ9BWF2 SNORD116-24-201ENST00000384549 92 ntBASIC-0.95□□□□□ -2.56
TRAIPQ9BWF2 MIR630-201ENST00000384957 97 ntBASIC-0.95□□□□□ -2.56
TRAIPQ9BWF2 MIR527-201ENST00000385244 85 ntBASIC-0.95□□□□□ -2.56
TRAIPQ9BWF2 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.95□□□□□ -2.56
TRAIPQ9BWF2 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.96□□□□□ -2.56
TRAIPQ9BWF2 RNA5SP266-201ENST00000410273 108 ntBASIC-0.96□□□□□ -2.56
TRAIPQ9BWF2 AL627230.5-201ENST00000619807 58 ntBASIC-0.96□□□□□ -2.56
TRAIPQ9BWF2 SNORD114-25-201ENST00000363742 72 ntBASIC-0.97□□□□□ -2.56
TRAIPQ9BWF2 MIR196A1-201ENST00000388006 70 ntBASIC-0.97□□□□□ -2.56
TRAIPQ9BWF2 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.98□□□□□ -2.57
TRAIPQ9BWF2 RNU6-542P-201ENST00000516405 103 ntBASIC-0.99□□□□□ -2.57
TRAIPQ9BWF2 RNY1P9-201ENST00000532431 109 ntBASIC-0.99□□□□□ -2.57
TRAIPQ9BWF2 RNA5SP331-201ENST00000364986 107 ntBASIC-1□□□□□ -2.57
TRAIPQ9BWF2 RNU6-649P-201ENST00000384463 107 ntBASIC-1□□□□□ -2.57
TRAIPQ9BWF2 Y_RNA.565-201ENST00000384719 101 ntBASIC-1□□□□□ -2.57
TRAIPQ9BWF2 RNU6-540P-201ENST00000384622 101 ntBASIC-1.01□□□□□ -2.57
TRAIPQ9BWF2 SNORD83B-201ENST00000386745 93 ntBASIC-1.01□□□□□ -2.57
TRAIPQ9BWF2 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.01□□□□□ -2.57
TRAIPQ9BWF2 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.02□□□□□ -2.57
TRAIPQ9BWF2 RNU6-630P-201ENST00000391258 106 ntBASIC-1.02□□□□□ -2.57
TRAIPQ9BWF2 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.02□□□□□ -2.57
TRAIPQ9BWF2 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.03□□□□□ -2.57
TRAIPQ9BWF2 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.03□□□□□ -2.57
TRAIPQ9BWF2 SNORD57-201ENST00000448188 72 ntBASIC-1.04□□□□□ -2.58
TRAIPQ9BWF2 U4.4-201ENST00000620626 117 ntBASIC-1.04□□□□□ -2.58
TRAIPQ9BWF2 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.05□□□□□ -2.58
TRAIPQ9BWF2 AL500527.2-201ENST00000454105 95 ntBASIC-1.05□□□□□ -2.58
TRAIPQ9BWF2 RNU6-523P-201ENST00000516304 54 ntBASIC-1.05□□□□□ -2.58
TRAIPQ9BWF2 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.05□□□□□ -2.58
TRAIPQ9BWF2 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.06□□□□□ -2.58
TRAIPQ9BWF2 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.06□□□□□ -2.58
TRAIPQ9BWF2 RNU6-431P-201ENST00000383874 107 ntBASIC-1.07□□□□□ -2.58
TRAIPQ9BWF2 MIR587-201ENST00000384845 96 ntBASIC-1.07□□□□□ -2.58
TRAIPQ9BWF2 SNORD64-201ENST00000386683 67 ntBASIC-1.08□□□□□ -2.58
TRAIPQ9BWF2 RNU6-539P-201ENST00000516665 103 ntBASIC-1.08□□□□□ -2.58
TRAIPQ9BWF2 SNORA25.4-201ENST00000363666 124 ntBASIC-1.09□□□□□ -2.58
TRAIPQ9BWF2 SNORD114-17-201ENST00000364699 75 ntBASIC-1.09□□□□□ -2.58
TRAIPQ9BWF2 MIR147A-201ENST00000385079 72 ntBASIC-1.09□□□□□ -2.58
TRAIPQ9BWF2 RNU6-638P-201ENST00000516582 104 ntBASIC-1.09□□□□□ -2.58
TRAIPQ9BWF2 RNU6-458P-201ENST00000384179 107 ntBASIC-1.1□□□□□ -2.59
TRAIPQ9BWF2 U6.58-201ENST00000613107 107 ntBASIC-1.1□□□□□ -2.59
TRAIPQ9BWF2 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.11□□□□□ -2.59
TRAIPQ9BWF2 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.11□□□□□ -2.59
TRAIPQ9BWF2 SCARNA17-201ENST00000516183 144 ntBASIC-1.11□□□□□ -2.59
TRAIPQ9BWF2 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.12□□□□□ -2.59
TRAIPQ9BWF2 uc_338.19-201ENST00000616808 99 ntBASIC-1.12□□□□□ -2.59
TRAIPQ9BWF2 MIR4499-201ENST00000584834 69 ntBASIC-1.13□□□□□ -2.59
TRAIPQ9BWF2 MIR382-201ENST00000637119 76 ntBASIC-1.13□□□□□ -2.59
TRAIPQ9BWF2 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.14□□□□□ -2.59
TRAIPQ9BWF2 MIR548AG1-201ENST00000579932 66 ntBASIC-1.14□□□□□ -2.59
TRAIPQ9BWF2 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.15□□□□□ -2.59
TRAIPQ9BWF2 MIR6738-201ENST00000619620 64 ntBASIC-1.15□□□□□ -2.59
TRAIPQ9BWF2 U6.111-201ENST00000636093 83 ntBASIC-1.15□□□□□ -2.59
TRAIPQ9BWF2 RNU7-88P-201ENST00000458752 63 ntBASIC-1.17□□□□□ -2.6
TRAIPQ9BWF2 RNU6-10P-201ENST00000384036 107 ntBASIC-1.18□□□□□ -2.6
TRAIPQ9BWF2 U7.5-201ENST00000517224 61 ntBASIC-1.18□□□□□ -2.6
TRAIPQ9BWF2 MIR4320-201ENST00000636981 65 ntBASIC-1.18□□□□□ -2.6
TRAIPQ9BWF2 SNX3P1X-201ENST00000414887 175 ntBASIC-1.19□□□□□ -2.6
TRAIPQ9BWF2 snoU83B.1-201ENST00000517136 88 ntBASIC-1.19□□□□□ -2.6
TRAIPQ9BWF2 RNU6-246P-201ENST00000384702 107 ntBASIC-1.2□□□□□ -2.6
TRAIPQ9BWF2 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.2□□□□□ -2.6
TRAIPQ9BWF2 RNU6-92P-201ENST00000605893 104 ntBASIC-1.2□□□□□ -2.6
TRAIPQ9BWF2 MIR4324-201ENST00000584846 72 ntBASIC-1.21□□□□□ -2.6
TRAIPQ9BWF2 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.22□□□□□ -2.6
TRAIPQ9BWF2 SNORD116-16-201ENST00000384533 92 ntBASIC-1.22□□□□□ -2.6
TRAIPQ9BWF2 MIR378F-201ENST00000578143 78 ntBASIC-1.24□□□□□ -2.61
TRAIPQ9BWF2 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.25□□□□□ -2.61
TRAIPQ9BWF2 RNU6-696P-201ENST00000390834 107 ntBASIC-1.25□□□□□ -2.61
TRAIPQ9BWF2 SNORA26.4-201ENST00000391188 123 ntBASIC-1.25□□□□□ -2.61
TRAIPQ9BWF2 AC005520.4-201ENST00000604337 90 ntBASIC-1.25□□□□□ -2.61
TRAIPQ9BWF2 SNORD115-33-201ENST00000363723 82 ntBASIC-1.26□□□□□ -2.61
TRAIPQ9BWF2 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.26□□□□□ -2.61
TRAIPQ9BWF2 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.26□□□□□ -2.61
TRAIPQ9BWF2 MIR1468-201ENST00000410600 86 ntBASIC-1.26□□□□□ -2.61
TRAIPQ9BWF2 RNU6-732P-201ENST00000516033 103 ntBASIC-1.26□□□□□ -2.61
TRAIPQ9BWF2 SNORD63.1-201ENST00000516178 80 ntBASIC-1.26□□□□□ -2.61
TRAIPQ9BWF2 MIR198-201ENST00000637333 62 ntBASIC-1.26□□□□□ -2.61
TRAIPQ9BWF2 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.28□□□□□ -2.61
TRAIPQ9BWF2 MIR4306-201ENST00000583390 91 ntBASIC-1.28□□□□□ -2.61
TRAIPQ9BWF2 AC103706.3-201ENST00000636297 85 ntBASIC-1.28□□□□□ -2.61
TRAIPQ9BWF2 RNU6-800P-201ENST00000384473 103 ntBASIC-1.29□□□□□ -2.62
TRAIPQ9BWF2 AL353691.2-201ENST00000443795 59 ntBASIC-1.31□□□□□ -2.62
TRAIPQ9BWF2 SNORA41B-201ENST00000384785 128 ntBASIC-1.32□□□□□ -2.62
TRAIPQ9BWF2 MIR601-201ENST00000385256 79 ntBASIC-1.32□□□□□ -2.62
TRAIPQ9BWF2 MIR548Q-201ENST00000408404 100 ntBASIC-1.33□□□□□ -2.62
TRAIPQ9BWF2 AC114801.3-201ENST00000510231 177 ntBASIC-1.33□□□□□ -2.62
TRAIPQ9BWF2 MIR4511-201ENST00000582784 87 ntBASIC-1.33□□□□□ -2.62
TRAIPQ9BWF2 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.34□□□□□ -2.62
TRAIPQ9BWF2 RNU7-134P-201ENST00000458997 64 ntBASIC-1.35□□□□□ -2.63
TRAIPQ9BWF2 SNORA25.5-201ENST00000363782 126 ntBASIC-1.36□□□□□ -2.63
TRAIPQ9BWF2 RNA5SP192-201ENST00000364404 120 ntBASIC-1.36□□□□□ -2.63
TRAIPQ9BWF2 MIR6818-201ENST00000621576 65 ntBASIC-1.36□□□□□ -2.63
TRAIPQ9BWF2 MIR29B1-201ENST00000385015 81 ntBASIC-1.37□□□□□ -2.63
TRAIPQ9BWF2 MIR3165-201ENST00000579874 75 ntBASIC-1.38□□□□□ -2.63
TRAIPQ9BWF2 RNU6-598P-201ENST00000364017 105 ntBASIC-1.4□□□□□ -2.63
TRAIPQ9BWF2 RNA5SP26-201ENST00000362406 119 ntBASIC-1.41□□□□□ -2.64
TRAIPQ9BWF2 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.41□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 272.2 ms