Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RNU6-247P-201ENST00000362636 107 ntBASIC-2.58□□□□□ -2.82
CCDC112Q8NEF3 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.58□□□□□ -2.82
CCDC112Q8NEF3 RNU6-255P-201ENST00000516957 105 ntBASIC-2.58□□□□□ -2.82
CCDC112Q8NEF3 MIRLET7A1-201ENST00000362295 80 ntBASIC-2.59□□□□□ -2.82
CCDC112Q8NEF3 RNU6-497P-201ENST00000365316 104 ntBASIC-2.59□□□□□ -2.82
CCDC112Q8NEF3 MIR496-201ENST00000385226 102 ntBASIC-2.59□□□□□ -2.82
CCDC112Q8NEF3 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.59□□□□□ -2.82
CCDC112Q8NEF3 SNORA41B-201ENST00000384785 128 ntBASIC-2.6□□□□□ -2.83
CCDC112Q8NEF3 SNORD1B-201ENST00000363091 84 ntBASIC-2.61□□□□□ -2.83
CCDC112Q8NEF3 RNU6-694P-201ENST00000364071 147 ntBASIC-2.61□□□□□ -2.83
CCDC112Q8NEF3 RNU6-1081P-201ENST00000384537 107 ntBASIC-2.61□□□□□ -2.83
CCDC112Q8NEF3 RNU6-907P-201ENST00000390924 102 ntBASIC-2.61□□□□□ -2.83
CCDC112Q8NEF3 RNU6-766P-201ENST00000362478 107 ntBASIC-2.62□□□□□ -2.83
CCDC112Q8NEF3 RNU6-668P-201ENST00000364180 107 ntBASIC-2.62□□□□□ -2.83
CCDC112Q8NEF3 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.62□□□□□ -2.83
CCDC112Q8NEF3 SNORA27.2-201ENST00000363365 126 ntBASIC-2.63□□□□□ -2.83
CCDC112Q8NEF3 RNU6-219P-201ENST00000364728 107 ntBASIC-2.63□□□□□ -2.83
CCDC112Q8NEF3 Y_RNA.544-201ENST00000384650 113 ntBASIC-2.63□□□□□ -2.83
CCDC112Q8NEF3 AC013734.1-201ENST00000619329 111 ntBASIC-2.63□□□□□ -2.83
CCDC112Q8NEF3 RNY4P7-201ENST00000364600 96 ntBASIC-2.64□□□□□ -2.83
CCDC112Q8NEF3 SNORD116-22-201ENST00000384430 92 ntBASIC-2.64□□□□□ -2.83
CCDC112Q8NEF3 MIR548BB-201ENST00000626714 66 ntBASIC-2.64□□□□□ -2.83
CCDC112Q8NEF3 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.64□□□□□ -2.83
CCDC112Q8NEF3 SNORD113.1-201ENST00000363280 73 ntBASIC-2.65□□□□□ -2.83
CCDC112Q8NEF3 RNU6-1325P-201ENST00000364905 105 ntBASIC-2.65□□□□□ -2.83
CCDC112Q8NEF3 RNU6-980P-201ENST00000516925 103 ntBASIC-2.65□□□□□ -2.83
CCDC112Q8NEF3 RNU7-151P-201ENST00000516930 53 ntBASIC-2.65□□□□□ -2.83
CCDC112Q8NEF3 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.65□□□□□ -2.83
CCDC112Q8NEF3 AC005520.4-201ENST00000604337 90 ntBASIC-2.65□□□□□ -2.83
CCDC112Q8NEF3 MIR8053-201ENST00000613344 75 ntBASIC-2.65□□□□□ -2.83
CCDC112Q8NEF3 MIR2052-201ENST00000636055 55 ntBASIC-2.65□□□□□ -2.83
CCDC112Q8NEF3 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.66□□□□□ -2.84
CCDC112Q8NEF3 RNY4P18-201ENST00000391107 89 ntBASIC-2.66□□□□□ -2.84
CCDC112Q8NEF3 RNU6-995P-201ENST00000391244 107 ntBASIC-2.66□□□□□ -2.84
CCDC112Q8NEF3 RNU4-88P-201ENST00000411220 86 ntBASIC-2.66□□□□□ -2.84
CCDC112Q8NEF3 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.66□□□□□ -2.84
CCDC112Q8NEF3 MIR1297-201ENST00000637311 77 ntBASIC-2.66□□□□□ -2.84
CCDC112Q8NEF3 Y_RNA.219-201ENST00000364232 113 ntBASIC-2.67□□□□□ -2.84
CCDC112Q8NEF3 RNA5SP173-201ENST00000364857 136 ntBASIC-2.67□□□□□ -2.84
CCDC112Q8NEF3 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-2.67□□□□□ -2.84
CCDC112Q8NEF3 RNU6-129P-201ENST00000391022 107 ntBASIC-2.67□□□□□ -2.84
CCDC112Q8NEF3 RNU6-267P-201ENST00000516714 103 ntBASIC-2.67□□□□□ -2.84
CCDC112Q8NEF3 RNU6-669P-201ENST00000365575 107 ntBASIC-2.68□□□□□ -2.84
CCDC112Q8NEF3 MIR3139-201ENST00000579145 76 ntBASIC-2.68□□□□□ -2.84
CCDC112Q8NEF3 MIR4484-201ENST00000582855 83 ntBASIC-2.68□□□□□ -2.84
CCDC112Q8NEF3 RNU6-402P-201ENST00000410678 103 ntBASIC-2.69□□□□□ -2.84
CCDC112Q8NEF3 SNORD63.2-201ENST00000516303 64 ntBASIC-2.69□□□□□ -2.84
CCDC112Q8NEF3 MIR7978-201ENST00000636158 59 ntBASIC-2.7□□□□□ -2.84
CCDC112Q8NEF3 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.71□□□□□ -2.84
CCDC112Q8NEF3 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.71□□□□□ -2.84
CCDC112Q8NEF3 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-2.71□□□□□ -2.84
CCDC112Q8NEF3 Y_RNA.261-201ENST00000364631 102 ntBASIC-2.72□□□□□ -2.84
CCDC112Q8NEF3 MIR579-201ENST00000385221 98 ntBASIC-2.72□□□□□ -2.84
CCDC112Q8NEF3 U6.97-201ENST00000636904 101 ntBASIC-2.72□□□□□ -2.84
CCDC112Q8NEF3 RNA5SP405-201ENST00000363059 114 ntBASIC-2.73□□□□□ -2.85
CCDC112Q8NEF3 SNORD45A-201ENST00000384512 84 ntBASIC-2.73□□□□□ -2.85
CCDC112Q8NEF3 MIR125B1-201ENST00000385236 88 ntBASIC-2.73□□□□□ -2.85
CCDC112Q8NEF3 RNU6-523P-201ENST00000516304 54 ntBASIC-2.74□□□□□ -2.85
CCDC112Q8NEF3 RNU6-589P-201ENST00000516485 107 ntBASIC-2.74□□□□□ -2.85
CCDC112Q8NEF3 SNORA63.4-201ENST00000362763 126 ntBASIC-2.75□□□□□ -2.85
CCDC112Q8NEF3 RNU6-755P-201ENST00000364400 103 ntBASIC-2.75□□□□□ -2.85
CCDC112Q8NEF3 Y_RNA.611-201ENST00000410682 108 ntBASIC-2.75□□□□□ -2.85
CCDC112Q8NEF3 RNU6-172P-201ENST00000411000 93 ntBASIC-2.75□□□□□ -2.85
CCDC112Q8NEF3 RNY3P8-201ENST00000411366 126 ntBASIC-2.75□□□□□ -2.85
CCDC112Q8NEF3 MIR548W-201ENST00000581970 74 ntBASIC-2.75□□□□□ -2.85
CCDC112Q8NEF3 MT-TM-201ENST00000387377 68 ntBASIC-2.76□□□□□ -2.85
CCDC112Q8NEF3 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.76□□□□□ -2.85
CCDC112Q8NEF3 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.76□□□□□ -2.85
CCDC112Q8NEF3 MALAT1.1-201ENST00000618249 95 ntBASIC-2.76□□□□□ -2.85
CCDC112Q8NEF3 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.77□□□□□ -2.85
CCDC112Q8NEF3 SNORD115-31-201ENST00000365318 82 ntBASIC-2.77□□□□□ -2.85
CCDC112Q8NEF3 RNU6-380P-201ENST00000410207 107 ntBASIC-2.78□□□□□ -2.85
CCDC112Q8NEF3 snoU13.10-201ENST00000459301 103 ntBASIC-2.78□□□□□ -2.85
CCDC112Q8NEF3 MIR664A-201ENST00000626086 82 ntBASIC-2.78□□□□□ -2.85
CCDC112Q8NEF3 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.79□□□□□ -2.86
CCDC112Q8NEF3 RNU6-974P-201ENST00000384099 108 ntBASIC-2.79□□□□□ -2.86
CCDC112Q8NEF3 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-2.79□□□□□ -2.86
CCDC112Q8NEF3 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.8□□□□□ -2.86
CCDC112Q8NEF3 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.8□□□□□ -2.86
CCDC112Q8NEF3 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.8□□□□□ -2.86
CCDC112Q8NEF3 AC006160.2-201ENST00000637708 154 ntBASIC-2.8□□□□□ -2.86
CCDC112Q8NEF3 RNU6-194P-201ENST00000363862 105 ntBASIC-2.81□□□□□ -2.86
CCDC112Q8NEF3 AP001318.4-201ENST00000616637 121 ntBASIC-2.81□□□□□ -2.86
CCDC112Q8NEF3 SNORD18C-201ENST00000362704 69 ntBASIC-2.82□□□□□ -2.86
CCDC112Q8NEF3 RNU6-959P-201ENST00000384671 107 ntBASIC-2.82□□□□□ -2.86
CCDC112Q8NEF3 AC008267.6-201ENST00000441664 139 ntBASIC-2.82□□□□□ -2.86
CCDC112Q8NEF3 SNORD54-201ENST00000459159 67 ntBASIC-2.82□□□□□ -2.86
CCDC112Q8NEF3 RNU6-675P-201ENST00000384236 104 ntBASIC-2.83□□□□□ -2.86
CCDC112Q8NEF3 AL031737.1-201ENST00000450125 223 ntBASIC-2.84□□□□□ -2.86
CCDC112Q8NEF3 SNORA40.13-201ENST00000516379 120 ntBASIC-2.84□□□□□ -2.86
CCDC112Q8NEF3 Y_RNA.139-201ENST00000363464 102 ntBASIC-2.85□□□□□ -2.87
CCDC112Q8NEF3 Y_RNA.273-201ENST00000364703 102 ntBASIC-2.85□□□□□ -2.87
CCDC112Q8NEF3 MIR450A1-201ENST00000362262 91 ntBASIC-2.86□□□□□ -2.87
CCDC112Q8NEF3 SNORD116-24-201ENST00000384549 92 ntBASIC-2.86□□□□□ -2.87
CCDC112Q8NEF3 RNU6-315P-201ENST00000362666 107 ntBASIC-2.87□□□□□ -2.87
CCDC112Q8NEF3 RNU6-1056P-201ENST00000383996 107 ntBASIC-2.87□□□□□ -2.87
CCDC112Q8NEF3 MIR581-201ENST00000384895 96 ntBASIC-2.87□□□□□ -2.87
CCDC112Q8NEF3 RNU6-834P-201ENST00000362367 110 ntBASIC-2.88□□□□□ -2.87
CCDC112Q8NEF3 RNU7-160P-201ENST00000516660 62 ntBASIC-2.88□□□□□ -2.87
CCDC112Q8NEF3 Y_RNA.709-201ENST00000516952 92 ntBASIC-2.88□□□□□ -2.87
Retrieved 100 of 98,524 protein–RNA pairs in 328 ms