Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU6-854P-201ENST00000364036 107 ntBASIC-2.63□□□□□ -2.83
USF3Q68DE3 Y_RNA.260-201ENST00000364628 101 ntBASIC-2.63□□□□□ -2.83
USF3Q68DE3 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.63□□□□□ -2.83
USF3Q68DE3 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.64□□□□□ -2.83
USF3Q68DE3 SNORD45.2-201ENST00000363552 72 ntBASIC-2.64□□□□□ -2.83
USF3Q68DE3 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-2.64□□□□□ -2.83
USF3Q68DE3 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.64□□□□□ -2.83
USF3Q68DE3 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC-2.65□□□□□ -2.83
USF3Q68DE3 RNU6-755P-201ENST00000364400 103 ntBASIC-2.65□□□□□ -2.83
USF3Q68DE3 RNU6-604P-201ENST00000390917 100 ntBASIC-2.65□□□□□ -2.83
USF3Q68DE3 Y_RNA.579-201ENST00000390939 94 ntBASIC-2.65□□□□□ -2.83
USF3Q68DE3 SCARNA23-201ENST00000516060 130 ntBASIC-2.65□□□□□ -2.83
USF3Q68DE3 SNORA63-201ENST00000363450 132 ntBASIC-2.66□□□□□ -2.84
USF3Q68DE3 MIR548F1-201ENST00000408667 84 ntBASIC-2.66□□□□□ -2.84
USF3Q68DE3 AC074348.1-201ENST00000426503 132 ntBASIC-2.66□□□□□ -2.84
USF3Q68DE3 Y_RNA.680-201ENST00000516441 93 ntBASIC-2.66□□□□□ -2.84
USF3Q68DE3 MIR1297-201ENST00000637311 77 ntBASIC-2.66□□□□□ -2.84
USF3Q68DE3 MIR1302-1-201ENST00000637932 143 ntBASIC-2.66□□□□□ -2.84
USF3Q68DE3 Y_RNA.70-201ENST00000362886 110 ntBASIC-2.67□□□□□ -2.84
USF3Q68DE3 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.67□□□□□ -2.84
USF3Q68DE3 SNORD116.2-201ENST00000391251 93 ntBASIC-2.67□□□□□ -2.84
USF3Q68DE3 AC062037.1-201ENST00000605302 128 ntBASIC-2.67□□□□□ -2.84
USF3Q68DE3 RNU6-330P-201ENST00000363015 107 ntBASIC-2.68□□□□□ -2.84
USF3Q68DE3 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.68□□□□□ -2.84
USF3Q68DE3 RNU6-196P-201ENST00000384315 107 ntBASIC-2.68□□□□□ -2.84
USF3Q68DE3 RNU6-772P-201ENST00000516042 105 ntBASIC-2.68□□□□□ -2.84
USF3Q68DE3 MIR4680-201ENST00000580906 66 ntBASIC-2.68□□□□□ -2.84
USF3Q68DE3 AC072026.1-201ENST00000605023 201 ntBASIC-2.68□□□□□ -2.84
USF3Q68DE3 MIR7110-201ENST00000612638 86 ntBASIC-2.68□□□□□ -2.84
USF3Q68DE3 SNORA40B-201ENST00000385573 128 ntBASIC-2.69□□□□□ -2.84
USF3Q68DE3 SNORD60.1-201ENST00000362451 73 ntBASIC-2.7□□□□□ -2.84
USF3Q68DE3 RNY3P1-201ENST00000365085 102 ntBASIC-2.7□□□□□ -2.84
USF3Q68DE3 Y_RNA.586-201ENST00000391146 98 ntBASIC-2.7□□□□□ -2.84
USF3Q68DE3 RNU6-904P-201ENST00000516206 101 ntBASIC-2.7□□□□□ -2.84
USF3Q68DE3 RNY4P13-201ENST00000384284 96 ntBASIC-2.71□□□□□ -2.84
USF3Q68DE3 RNU6-542P-201ENST00000516405 103 ntBASIC-2.71□□□□□ -2.84
USF3Q68DE3 Y_RNA.69-201ENST00000362885 109 ntBASIC-2.72□□□□□ -2.84
USF3Q68DE3 Y_RNA.202-201ENST00000364083 110 ntBASIC-2.72□□□□□ -2.84
USF3Q68DE3 MIR548AH-201ENST00000637109 76 ntBASIC-2.72□□□□□ -2.84
USF3Q68DE3 RNU6-810P-201ENST00000364001 107 ntBASIC-2.72□□□□□ -2.85
USF3Q68DE3 SNORD45A-201ENST00000384512 84 ntBASIC-2.72□□□□□ -2.85
USF3Q68DE3 RNU6-1135P-201ENST00000411083 103 ntBASIC-2.72□□□□□ -2.85
USF3Q68DE3 RNU6-574P-201ENST00000384265 107 ntBASIC-2.73□□□□□ -2.85
USF3Q68DE3 RNU6-985P-201ENST00000410182 104 ntBASIC-2.73□□□□□ -2.85
USF3Q68DE3 AL158147.1-201ENST00000443970 75 ntBASIC-2.73□□□□□ -2.85
USF3Q68DE3 RNU6-1128P-201ENST00000362825 109 ntBASIC-2.73□□□□□ -2.85
USF3Q68DE3 RNU6-1020P-201ENST00000363684 107 ntBASIC-2.73□□□□□ -2.85
USF3Q68DE3 Y_RNA.478-201ENST00000384358 107 ntBASIC-2.73□□□□□ -2.85
USF3Q68DE3 RNU6-635P-201ENST00000516651 102 ntBASIC-2.73□□□□□ -2.85
USF3Q68DE3 RNU6-557P-201ENST00000516842 110 ntBASIC-2.73□□□□□ -2.85
USF3Q68DE3 Y_RNA.532-201ENST00000384590 113 ntBASIC-2.74□□□□□ -2.85
USF3Q68DE3 RNU6-1211P-201ENST00000459179 105 ntBASIC-2.74□□□□□ -2.85
USF3Q68DE3 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.74□□□□□ -2.85
USF3Q68DE3 SNORD45C-201ENST00000383893 79 ntBASIC-2.74□□□□□ -2.85
USF3Q68DE3 RNU6-876P-201ENST00000391295 104 ntBASIC-2.74□□□□□ -2.85
USF3Q68DE3 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.74□□□□□ -2.85
USF3Q68DE3 RNU6-92P-201ENST00000605893 104 ntBASIC-2.75□□□□□ -2.85
USF3Q68DE3 Y_RNA.272-201ENST00000364696 102 ntBASIC-2.76□□□□□ -2.85
USF3Q68DE3 RNU4-40P-201ENST00000364351 143 ntBASIC-2.76□□□□□ -2.85
USF3Q68DE3 Y_RNA.240-201ENST00000364469 95 ntBASIC-2.76□□□□□ -2.85
USF3Q68DE3 SNORA40.16-201ENST00000517238 121 ntBASIC-2.76□□□□□ -2.85
USF3Q68DE3 MTATP8P2-201ENST00000435212 202 ntBASIC-2.77□□□□□ -2.85
USF3Q68DE3 RNU6-1137P-201ENST00000517073 99 ntBASIC-2.77□□□□□ -2.85
USF3Q68DE3 AC022559.1-201ENST00000520905 205 ntBASIC-2.77□□□□□ -2.85
USF3Q68DE3 RNU6-742P-201ENST00000365289 107 ntBASIC-2.77□□□□□ -2.85
USF3Q68DE3 MIR363-201ENST00000384840 75 ntBASIC-2.77□□□□□ -2.85
USF3Q68DE3 RNU6-402P-201ENST00000410678 103 ntBASIC-2.77□□□□□ -2.85
USF3Q68DE3 U7.3-201ENST00000616123 62 ntBASIC-2.77□□□□□ -2.85
USF3Q68DE3 MIR8062-201ENST00000621515 85 ntBASIC-2.77□□□□□ -2.85
USF3Q68DE3 RNU6-1107P-201ENST00000364817 104 ntBASIC-2.78□□□□□ -2.85
USF3Q68DE3 AC134503.1-201ENST00000633048 54 ntBASIC-2.78□□□□□ -2.85
USF3Q68DE3 RNU6-633P-201ENST00000362612 103 ntBASIC-2.78□□□□□ -2.86
USF3Q68DE3 Y_RNA.662-201ENST00000516028 97 ntBASIC-2.78□□□□□ -2.86
USF3Q68DE3 MIR4760-201ENST00000585040 80 ntBASIC-2.78□□□□□ -2.86
USF3Q68DE3 AC139792.2-201ENST00000624218 587 ntBASIC-2.78□□□□□ -2.86
USF3Q68DE3 MIR4317-201ENST00000637586 65 ntBASIC-2.78□□□□□ -2.86
USF3Q68DE3 RNU6-686P-201ENST00000364839 107 ntBASIC-2.79□□□□□ -2.86
USF3Q68DE3 SNORA33.2-201ENST00000365413 134 ntBASIC-2.79□□□□□ -2.86
USF3Q68DE3 TMSB4XP3-201ENST00000445144 114 ntBASIC-2.79□□□□□ -2.86
USF3Q68DE3 AC020661.2-201ENST00000560114 134 ntBASIC-2.79□□□□□ -2.86
USF3Q68DE3 MIRLET7A1-201ENST00000362295 80 ntBASIC-2.8□□□□□ -2.86
USF3Q68DE3 SNORD33.1-201ENST00000516213 88 ntBASIC-2.8□□□□□ -2.86
USF3Q68DE3 RNU6-1325P-201ENST00000364905 105 ntBASIC-2.8□□□□□ -2.86
USF3Q68DE3 MIR4668-201ENST00000582284 70 ntBASIC-2.8□□□□□ -2.86
USF3Q68DE3 Y_RNA.818-201ENST00000618813 71 ntBASIC-2.8□□□□□ -2.86
USF3Q68DE3 RNU6-789P-201ENST00000517105 102 ntBASIC-2.81□□□□□ -2.86
USF3Q68DE3 Y_RNA.431-201ENST00000384086 102 ntBASIC-2.82□□□□□ -2.86
USF3Q68DE3 RNU6-162P-201ENST00000516228 103 ntBASIC-2.82□□□□□ -2.86
USF3Q68DE3 AP001318.4-201ENST00000616637 121 ntBASIC-2.82□□□□□ -2.86
USF3Q68DE3 Y_RNA.200-201ENST00000364018 102 ntBASIC-2.83□□□□□ -2.86
USF3Q68DE3 MIR548X2-201ENST00000579776 100 ntBASIC-2.83□□□□□ -2.86
USF3Q68DE3 AC141273.2-201ENST00000618989 130 ntBASIC-2.83□□□□□ -2.86
USF3Q68DE3 RNU6-267P-201ENST00000516714 103 ntBASIC-2.83□□□□□ -2.86
USF3Q68DE3 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-2.83□□□□□ -2.86
USF3Q68DE3 RNU6-474P-201ENST00000384243 107 ntBASIC-2.84□□□□□ -2.86
USF3Q68DE3 MIR154-201ENST00000385243 84 ntBASIC-2.84□□□□□ -2.86
USF3Q68DE3 Y_RNA.107-201ENST00000363190 121 ntBASIC-2.84□□□□□ -2.86
USF3Q68DE3 RNU4-85P-201ENST00000364675 123 ntBASIC-2.84□□□□□ -2.86
USF3Q68DE3 RNU6-788P-201ENST00000390967 104 ntBASIC-2.84□□□□□ -2.86
USF3Q68DE3 Y_RNA.709-201ENST00000516952 92 ntBASIC-2.85□□□□□ -2.87
Retrieved 100 of 98,524 protein–RNA pairs in 241.3 ms