Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 Y_RNA.109-201ENST00000363215 102 ntBASIC0.18□□□□□ -2.38
COL4A3Q01955 MIR4667-201ENST00000578933 66 ntBASIC0.18□□□□□ -2.38
COL4A3Q01955 MIR148A-201ENST00000362215 68 ntBASIC0.18□□□□□ -2.38
COL4A3Q01955 Y_RNA.413-201ENST00000384007 102 ntBASIC0.18□□□□□ -2.38
COL4A3Q01955 Y_RNA.754-201ENST00000476024 102 ntBASIC0.18□□□□□ -2.38
COL4A3Q01955 Y_RNA.790-201ENST00000614282 102 ntBASIC0.18□□□□□ -2.38
COL4A3Q01955 Y_RNA.782-201ENST00000614695 102 ntBASIC0.18□□□□□ -2.38
COL4A3Q01955 RNU6-231P-201ENST00000517122 103 ntBASIC0.17□□□□□ -2.38
COL4A3Q01955 RNU6-901P-201ENST00000384593 106 ntBASIC0.16□□□□□ -2.38
COL4A3Q01955 SNORD116.2-201ENST00000391251 93 ntBASIC0.16□□□□□ -2.38
COL4A3Q01955 MIR7110-201ENST00000612638 86 ntBASIC0.16□□□□□ -2.38
COL4A3Q01955 SNORA42.1-201ENST00000363515 137 ntBASIC0.15□□□□□ -2.39
COL4A3Q01955 MT-TQ-201ENST00000387372 72 ntBASIC0.15□□□□□ -2.39
COL4A3Q01955 Y_RNA.583-201ENST00000391033 113 ntBASIC0.15□□□□□ -2.39
COL4A3Q01955 MIR6888-201ENST00000621977 67 ntBASIC0.15□□□□□ -2.39
COL4A3Q01955 SNORD113-4-201ENST00000364802 75 ntBASIC0.14□□□□□ -2.39
COL4A3Q01955 Y_RNA.514-201ENST00000384528 112 ntBASIC0.14□□□□□ -2.39
COL4A3Q01955 Y_RNA.698-201ENST00000516798 118 ntBASIC0.14□□□□□ -2.39
COL4A3Q01955 MIR6854-201ENST00000614935 69 ntBASIC0.14□□□□□ -2.39
COL4A3Q01955 AL445584.3-201ENST00000617173 78 ntBASIC0.14□□□□□ -2.39
COL4A3Q01955 RNU6-924P-201ENST00000362926 108 ntBASIC0.13□□□□□ -2.39
COL4A3Q01955 RNU6-1262P-201ENST00000516217 96 ntBASIC0.13□□□□□ -2.39
COL4A3Q01955 U7.5-201ENST00000517224 61 ntBASIC0.13□□□□□ -2.39
COL4A3Q01955 MIR224-201ENST00000384889 81 ntBASIC0.12□□□□□ -2.39
COL4A3Q01955 MIR214-201ENST00000385214 110 ntBASIC0.12□□□□□ -2.39
COL4A3Q01955 RNU6-1312P-201ENST00000362425 108 ntBASIC0.11□□□□□ -2.39
COL4A3Q01955 RNU6-172P-201ENST00000411000 93 ntBASIC0.11□□□□□ -2.39
COL4A3Q01955 MIR4464-201ENST00000580818 92 ntBASIC0.11□□□□□ -2.39
COL4A3Q01955 MIR655-201ENST00000362159 97 ntBASIC0.11□□□□□ -2.39
COL4A3Q01955 SNORD114-5-201ENST00000362928 70 ntBASIC0.11□□□□□ -2.39
COL4A3Q01955 SNORD1B-201ENST00000363091 84 ntBASIC0.11□□□□□ -2.39
COL4A3Q01955 AC244250.2-201ENST00000418731 148 ntBASIC0.11□□□□□ -2.39
COL4A3Q01955 MIR8068-201ENST00000618032 68 ntBASIC0.11□□□□□ -2.39
COL4A3Q01955 RNU6-598P-201ENST00000364017 105 ntBASIC0.1□□□□□ -2.39
COL4A3Q01955 RNA5SP451-201ENST00000410588 110 ntBASIC0.1□□□□□ -2.39
COL4A3Q01955 MIR4280-201ENST00000582178 76 ntBASIC0.1□□□□□ -2.39
COL4A3Q01955 SNORD114-16-201ENST00000363044 70 ntBASIC0.09□□□□□ -2.39
COL4A3Q01955 SNORD114-28-201ENST00000363610 72 ntBASIC0.09□□□□□ -2.39
COL4A3Q01955 RNU6-810P-201ENST00000364001 107 ntBASIC0.09□□□□□ -2.39
COL4A3Q01955 RNU6-929P-201ENST00000384429 107 ntBASIC0.09□□□□□ -2.39
COL4A3Q01955 RNU6-696P-201ENST00000390834 107 ntBASIC0.09□□□□□ -2.39
COL4A3Q01955 MIR5704-201ENST00000584029 77 ntBASIC0.09□□□□□ -2.39
COL4A3Q01955 MIR371B-201ENST00000638082 66 ntBASIC0.09□□□□□ -2.39
COL4A3Q01955 RNU4-63P-201ENST00000411313 118 ntBASIC0.08□□□□□ -2.4
COL4A3Q01955 RNU7-88P-201ENST00000458752 63 ntBASIC0.08□□□□□ -2.4
COL4A3Q01955 Y_RNA.722-201ENST00000517279 114 ntBASIC0.08□□□□□ -2.4
COL4A3Q01955 MIR7978-201ENST00000636158 59 ntBASIC0.08□□□□□ -2.4
COL4A3Q01955 Y_RNA.468-201ENST00000384298 102 ntBASIC0.08□□□□□ -2.4
COL4A3Q01955 SNORD56B-201ENST00000384713 71 ntBASIC0.08□□□□□ -2.4
COL4A3Q01955 MIR548AA1-201ENST00000384971 97 ntBASIC0.08□□□□□ -2.4
COL4A3Q01955 MIR124-2-201ENST00000385081 109 ntBASIC0.08□□□□□ -2.4
COL4A3Q01955 RNU7-151P-201ENST00000516930 53 ntBASIC0.08□□□□□ -2.4
COL4A3Q01955 SNORA40B-201ENST00000385573 128 ntBASIC0.07□□□□□ -2.4
COL4A3Q01955 RNU6-808P-201ENST00000391233 108 ntBASIC0.07□□□□□ -2.4
COL4A3Q01955 MIR1295A-201ENST00000408463 79 ntBASIC0.07□□□□□ -2.4
COL4A3Q01955 AC114755.3-201ENST00000481111 251 ntBASIC0.07□□□□□ -2.4
COL4A3Q01955 U2.18-201ENST00000622185 84 ntBASIC0.07□□□□□ -2.4
COL4A3Q01955 SNORD114-12-201ENST00000365400 75 ntBASIC0.06□□□□□ -2.4
COL4A3Q01955 RNU6-141P-201ENST00000410499 105 ntBASIC0.06□□□□□ -2.4
COL4A3Q01955 Y_RNA.613-201ENST00000410726 97 ntBASIC0.06□□□□□ -2.4
COL4A3Q01955 MIR4290-201ENST00000583807 95 ntBASIC0.06□□□□□ -2.4
COL4A3Q01955 SNORA40.16-201ENST00000517238 121 ntBASIC0.05□□□□□ -2.4
COL4A3Q01955 RNU6-1174P-201ENST00000517278 101 ntBASIC0.05□□□□□ -2.4
COL4A3Q01955 MIR1295B-201ENST00000636144 60 ntBASIC0.05□□□□□ -2.4
COL4A3Q01955 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.04□□□□□ -2.4
COL4A3Q01955 MIR579-201ENST00000385221 98 ntBASIC0.03□□□□□ -2.4
COL4A3Q01955 AL445193.1-201ENST00000441183 141 ntBASIC0.03□□□□□ -2.4
COL4A3Q01955 SNORD63.1-201ENST00000516178 80 ntBASIC0.03□□□□□ -2.4
COL4A3Q01955 MIR4490-201ENST00000582647 84 ntBASIC0.03□□□□□ -2.4
COL4A3Q01955 RNU6-936P-201ENST00000384005 107 ntBASIC0.02□□□□□ -2.41
COL4A3Q01955 MIR4263-201ENST00000584745 83 ntBASIC0.02□□□□□ -2.41
COL4A3Q01955 SNORA18.1-201ENST00000363418 128 ntBASIC0.02□□□□□ -2.41
COL4A3Q01955 SNORD74.6-201ENST00000364796 70 ntBASIC0.02□□□□□ -2.41
COL4A3Q01955 RNU6-995P-201ENST00000391244 107 ntBASIC0.02□□□□□ -2.41
COL4A3Q01955 MIR548X-201ENST00000580069 75 ntBASIC0.02□□□□□ -2.41
COL4A3Q01955 MIR365A-201ENST00000362260 87 ntBASIC0.01□□□□□ -2.41
COL4A3Q01955 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.01□□□□□ -2.41
COL4A3Q01955 SNORD38.3-201ENST00000516599 73 ntBASIC0□□□□□ -2.41
COL4A3Q01955 RNU7-160P-201ENST00000516660 62 ntBASIC0□□□□□ -2.41
COL4A3Q01955 SNORD18.2-201ENST00000459604 70 ntBASIC-0.01□□□□□ -2.41
COL4A3Q01955 RNA5SP66-201ENST00000517178 101 ntBASIC-0.01□□□□□ -2.41
COL4A3Q01955 MIR518B-201ENST00000385127 83 ntBASIC-0.02□□□□□ -2.41
COL4A3Q01955 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.02□□□□□ -2.41
COL4A3Q01955 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.02□□□□□ -2.41
COL4A3Q01955 MIR6851-201ENST00000617060 67 ntBASIC-0.02□□□□□ -2.41
COL4A3Q01955 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.03□□□□□ -2.41
COL4A3Q01955 RNU4-33P-201ENST00000364316 85 ntBASIC-0.03□□□□□ -2.41
COL4A3Q01955 RNY4P7-201ENST00000364600 96 ntBASIC-0.03□□□□□ -2.41
COL4A3Q01955 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
COL4A3Q01955 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
COL4A3Q01955 RNU6-419P-201ENST00000517030 63 ntBASIC-0.04□□□□□ -2.42
COL4A3Q01955 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.04□□□□□ -2.42
COL4A3Q01955 AL590491.3-201ENST00000610731 82 ntBASIC-0.04□□□□□ -2.42
COL4A3Q01955 SNORA32.3-201ENST00000384772 121 ntBASIC-0.05□□□□□ -2.42
COL4A3Q01955 MIR4320-201ENST00000636981 65 ntBASIC-0.05□□□□□ -2.42
COL4A3Q01955 AC093726.3-201ENST00000637588 150 ntBASIC-0.05□□□□□ -2.42
COL4A3Q01955 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.05□□□□□ -2.42
COL4A3Q01955 MIR204-201ENST00000385200 110 ntBASIC-0.05□□□□□ -2.42
COL4A3Q01955 MIR548Q-201ENST00000408404 100 ntBASIC-0.06□□□□□ -2.42
COL4A3Q01955 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.06□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 319.1 ms