Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNORD114-9-201ENST00000364370 72 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 SNORA62.4-201ENST00000365504 151 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 RNU6-936P-201ENST00000384005 107 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 RNU6-696P-201ENST00000390834 107 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 RNA5SP163-201ENST00000410304 99 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 RNU7-165P-201ENST00000458864 60 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 RNU7-55P-201ENST00000459426 62 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 AC108740.1-201ENST00000498629 225 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 RNU6-231P-201ENST00000517122 103 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 SNORA40.16-201ENST00000517238 121 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 MIR4768-201ENST00000585270 74 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 MIR6888-201ENST00000621977 67 ntBASIC0.15□□□□□ -2.39
COL4A4P53420 SNORD1B-201ENST00000363091 84 ntBASIC0.14□□□□□ -2.39
COL4A4P53420 RNU7-129P-201ENST00000516128 62 ntBASIC0.14□□□□□ -2.39
COL4A4P53420 AC104408.1-201ENST00000605241 170 ntBASIC0.14□□□□□ -2.39
COL4A4P53420 MIR145-201ENST00000384967 88 ntBASIC0.14□□□□□ -2.39
COL4A4P53420 MIR601-201ENST00000385256 79 ntBASIC0.14□□□□□ -2.39
COL4A4P53420 RNU6-127P-201ENST00000390897 107 ntBASIC0.14□□□□□ -2.39
COL4A4P53420 AC114755.3-201ENST00000481111 251 ntBASIC0.14□□□□□ -2.39
COL4A4P53420 MIRLET7D-201ENST00000362263 87 ntBASIC0.13□□□□□ -2.39
COL4A4P53420 RNU6-46P-201ENST00000383860 107 ntBASIC0.13□□□□□ -2.39
COL4A4P53420 RNU6-1133P-201ENST00000410963 100 ntBASIC0.13□□□□□ -2.39
COL4A4P53420 SNORD63.1-201ENST00000516178 80 ntBASIC0.13□□□□□ -2.39
COL4A4P53420 RNY1P9-201ENST00000532431 109 ntBASIC0.13□□□□□ -2.39
COL4A4P53420 MIR4645-201ENST00000583158 77 ntBASIC0.13□□□□□ -2.39
COL4A4P53420 uc_338.36-201ENST00000622331 158 ntBASIC0.13□□□□□ -2.39
COL4A4P53420 MIR655-201ENST00000362159 97 ntBASIC0.12□□□□□ -2.39
COL4A4P53420 RNU6-172P-201ENST00000411000 93 ntBASIC0.12□□□□□ -2.39
COL4A4P53420 RNU7-88P-201ENST00000458752 63 ntBASIC0.12□□□□□ -2.39
COL4A4P53420 U2.18-201ENST00000622185 84 ntBASIC0.12□□□□□ -2.39
COL4A4P53420 MIR6514-201ENST00000622549 70 ntBASIC0.12□□□□□ -2.39
COL4A4P53420 MIR198-201ENST00000637333 62 ntBASIC0.12□□□□□ -2.39
COL4A4P53420 Y_RNA.109-201ENST00000363215 102 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 RNU6-973P-201ENST00000364690 107 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 RNU4-88P-201ENST00000411220 86 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 RNU7-159P-201ENST00000459284 62 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 MIR4464-201ENST00000580818 92 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 RNU6-598P-201ENST00000364017 105 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 SNORD74.6-201ENST00000364796 70 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 SNORD114-12-201ENST00000365400 75 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 RNU6-455P-201ENST00000384681 107 ntBASIC0.11□□□□□ -2.39
COL4A4P53420 SNORD45.2-201ENST00000363552 72 ntBASIC0.1□□□□□ -2.39
COL4A4P53420 SNORD49B-201ENST00000365172 72 ntBASIC0.1□□□□□ -2.39
COL4A4P53420 RNU6-974P-201ENST00000384099 108 ntBASIC0.1□□□□□ -2.39
COL4A4P53420 RNU6-901P-201ENST00000384593 106 ntBASIC0.1□□□□□ -2.39
COL4A4P53420 MIR579-201ENST00000385221 98 ntBASIC0.1□□□□□ -2.39
COL4A4P53420 MIR1295A-201ENST00000408463 79 ntBASIC0.1□□□□□ -2.39
COL4A4P53420 RNU7-160P-201ENST00000516660 62 ntBASIC0.1□□□□□ -2.39
COL4A4P53420 MIR124-2-201ENST00000385081 109 ntBASIC0.09□□□□□ -2.39
COL4A4P53420 MIR545-201ENST00000385085 106 ntBASIC0.09□□□□□ -2.39
COL4A4P53420 RNU6-1206P-201ENST00000516339 103 ntBASIC0.09□□□□□ -2.39
COL4A4P53420 RNU6-1174P-201ENST00000517278 101 ntBASIC0.09□□□□□ -2.39
COL4A4P53420 SNORD56B-201ENST00000384713 71 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.08□□□□□ -2.4
COL4A4P53420 SNORD19-201ENST00000391191 68 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 SNORD18.2-201ENST00000459604 70 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 DLEU2_4.2-201ENST00000616613 58 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 MIR214-201ENST00000385214 110 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 Y_RNA.613-201ENST00000410726 97 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 RNU6-1267P-201ENST00000410747 107 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 AC244250.2-201ENST00000418731 148 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 RNU6-1238P-201ENST00000517215 102 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 MIR1295B-201ENST00000636144 60 ntBASIC0.08□□□□□ -2.4
COL4A4P53420 SNORA18.1-201ENST00000363418 128 ntBASIC0.07□□□□□ -2.4
COL4A4P53420 SNORA42.1-201ENST00000363515 137 ntBASIC0.06□□□□□ -2.4
COL4A4P53420 MIR548AL-201ENST00000578416 97 ntBASIC0.06□□□□□ -2.4
COL4A4P53420 MIR4290-201ENST00000583807 95 ntBASIC0.06□□□□□ -2.4
COL4A4P53420 SNORD114-16-201ENST00000363044 70 ntBASIC0.05□□□□□ -2.4
COL4A4P53420 Y_RNA.139-201ENST00000363464 102 ntBASIC0.05□□□□□ -2.4
COL4A4P53420 RNU6-929P-201ENST00000384429 107 ntBASIC0.05□□□□□ -2.4
COL4A4P53420 MIR518B-201ENST00000385127 83 ntBASIC0.05□□□□□ -2.4
COL4A4P53420 RNU6-995P-201ENST00000391244 107 ntBASIC0.05□□□□□ -2.4
COL4A4P53420 MIR3170-201ENST00000582699 77 ntBASIC0.05□□□□□ -2.4
COL4A4P53420 MIR5704-201ENST00000584029 77 ntBASIC0.05□□□□□ -2.4
COL4A4P53420 AP002795.1-201ENST00000534879 84 ntBASIC0.05□□□□□ -2.4
COL4A4P53420 MIR148A-201ENST00000362215 68 ntBASIC0.04□□□□□ -2.4
COL4A4P53420 MIR125B1-201ENST00000385236 88 ntBASIC0.04□□□□□ -2.4
COL4A4P53420 SNORA26.4-201ENST00000391188 123 ntBASIC0.04□□□□□ -2.4
COL4A4P53420 SNORD38.3-201ENST00000516599 73 ntBASIC0.04□□□□□ -2.4
COL4A4P53420 RNU6-838P-201ENST00000363399 108 ntBASIC0.03□□□□□ -2.4
COL4A4P53420 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC0.03□□□□□ -2.4
COL4A4P53420 MIR4263-201ENST00000584745 83 ntBASIC0.03□□□□□ -2.4
COL4A4P53420 MIR6851-201ENST00000617060 67 ntBASIC0.03□□□□□ -2.4
COL4A4P53420 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.03□□□□□ -2.4
COL4A4P53420 SNORA27.2-201ENST00000363365 126 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 Y_RNA.379-201ENST00000365653 102 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 MIR29B1-201ENST00000385015 81 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 MIR1207-201ENST00000408249 87 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 MIR548F3-201ENST00000408509 87 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 AL451105.1-201ENST00000450005 189 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 AL590491.3-201ENST00000610731 82 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 MIR371B-201ENST00000638082 66 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 RNU6-828P-201ENST00000364876 107 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 MIR548Q-201ENST00000408404 100 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 RNA5SP451-201ENST00000410588 110 ntBASIC0.02□□□□□ -2.41
COL4A4P53420 RNU6-247P-201ENST00000362636 107 ntBASIC0.01□□□□□ -2.41
COL4A4P53420 RNU6-1233P-201ENST00000362922 102 ntBASIC0.01□□□□□ -2.41
COL4A4P53420 SNORD114-28-201ENST00000363610 72 ntBASIC0.01□□□□□ -2.41
COL4A4P53420 SNORD22.1-201ENST00000516331 125 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms