Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.22□□□□□ -2.6
SCN1AP35498 MIR548C-201ENST00000384815 97 ntBASIC-1.22□□□□□ -2.6
SCN1AP35498 MIR6502-201ENST00000617296 76 ntBASIC-1.22□□□□□ -2.6
SCN1AP35498 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.22□□□□□ -2.6
SCN1AP35498 MIR548V-201ENST00000584165 80 ntBASIC-1.23□□□□□ -2.61
SCN1AP35498 RNU6-330P-201ENST00000363015 107 ntBASIC-1.23□□□□□ -2.61
SCN1AP35498 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.23□□□□□ -2.61
SCN1AP35498 SNORD45A-201ENST00000384512 84 ntBASIC-1.23□□□□□ -2.61
SCN1AP35498 RNA5SP89-201ENST00000410300 108 ntBASIC-1.23□□□□□ -2.61
SCN1AP35498 U4.2-201ENST00000618561 85 ntBASIC-1.23□□□□□ -2.61
SCN1AP35498 MIR664A-201ENST00000626086 82 ntBASIC-1.23□□□□□ -2.61
SCN1AP35498 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.24□□□□□ -2.61
SCN1AP35498 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.24□□□□□ -2.61
SCN1AP35498 RNU6-630P-201ENST00000391258 106 ntBASIC-1.24□□□□□ -2.61
SCN1AP35498 RNU6-70P-201ENST00000516438 60 ntBASIC-1.24□□□□□ -2.61
SCN1AP35498 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.25□□□□□ -2.61
SCN1AP35498 RNU6-44P-201ENST00000384045 107 ntBASIC-1.25□□□□□ -2.61
SCN1AP35498 MIR5683-201ENST00000636514 76 ntBASIC-1.25□□□□□ -2.61
SCN1AP35498 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.26□□□□□ -2.61
SCN1AP35498 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.26□□□□□ -2.61
SCN1AP35498 RNU6-129P-201ENST00000391022 107 ntBASIC-1.27□□□□□ -2.61
SCN1AP35498 SNORD113-2-201ENST00000391082 72 ntBASIC-1.27□□□□□ -2.61
SCN1AP35498 RNU6-695P-201ENST00000391157 104 ntBASIC-1.27□□□□□ -2.61
SCN1AP35498 RNU6-402P-201ENST00000410678 103 ntBASIC-1.27□□□□□ -2.61
SCN1AP35498 RNU7-171P-201ENST00000459581 62 ntBASIC-1.27□□□□□ -2.61
SCN1AP35498 RNU6-315P-201ENST00000362666 107 ntBASIC-1.27□□□□□ -2.61
SCN1AP35498 RNU6-604P-201ENST00000390917 100 ntBASIC-1.27□□□□□ -2.61
SCN1AP35498 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.28□□□□□ -2.61
SCN1AP35498 MIR488-201ENST00000365739 83 ntBASIC-1.28□□□□□ -2.61
SCN1AP35498 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.28□□□□□ -2.61
SCN1AP35498 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.28□□□□□ -2.62
SCN1AP35498 MIR548AA1-201ENST00000384971 97 ntBASIC-1.28□□□□□ -2.62
SCN1AP35498 RNU6-587P-201ENST00000391282 106 ntBASIC-1.28□□□□□ -2.62
SCN1AP35498 RNU6-380P-201ENST00000410207 107 ntBASIC-1.28□□□□□ -2.62
SCN1AP35498 AC091912.2-201ENST00000624798 167 ntBASIC-1.28□□□□□ -2.62
SCN1AP35498 MIR1246-201ENST00000636535 73 ntBASIC-1.28□□□□□ -2.62
SCN1AP35498 RNU6-732P-201ENST00000516033 103 ntBASIC-1.29□□□□□ -2.62
SCN1AP35498 RNU6-542P-201ENST00000516405 103 ntBASIC-1.29□□□□□ -2.62
SCN1AP35498 MIR664B-201ENST00000626756 61 ntBASIC-1.29□□□□□ -2.62
SCN1AP35498 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.3□□□□□ -2.62
SCN1AP35498 RNA5SP26-201ENST00000362406 119 ntBASIC-1.3□□□□□ -2.62
SCN1AP35498 RNU6-49P-201ENST00000384256 107 ntBASIC-1.3□□□□□ -2.62
SCN1AP35498 SNORD116-16-201ENST00000384533 92 ntBASIC-1.3□□□□□ -2.62
SCN1AP35498 RNA5SP173-201ENST00000364857 136 ntBASIC-1.31□□□□□ -2.62
SCN1AP35498 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.32□□□□□ -2.62
SCN1AP35498 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.32□□□□□ -2.62
SCN1AP35498 AC090616.4-201ENST00000448026 115 ntBASIC-1.32□□□□□ -2.62
SCN1AP35498 U2.18-201ENST00000622185 84 ntBASIC-1.32□□□□□ -2.62
SCN1AP35498 RNU6-668P-201ENST00000364180 107 ntBASIC-1.32□□□□□ -2.62
SCN1AP35498 RNU7-151P-201ENST00000516930 53 ntBASIC-1.32□□□□□ -2.62
SCN1AP35498 SNORD1B-201ENST00000363091 84 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 MIR450A2-201ENST00000385022 100 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 RNU6-400P-201ENST00000391173 106 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 MIR548AI-201ENST00000579940 88 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 RNU6-247P-201ENST00000362636 107 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 AL603908.1-201ENST00000406098 201 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 RNU6-168P-201ENST00000516189 101 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 AC120024.2-201ENST00000576526 175 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 MIR5588-201ENST00000581890 63 ntBASIC-1.33□□□□□ -2.62
SCN1AP35498 RNU6-79P-201ENST00000362511 107 ntBASIC-1.34□□□□□ -2.62
SCN1AP35498 RNU6-215P-201ENST00000365169 102 ntBASIC-1.34□□□□□ -2.62
SCN1AP35498 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.35□□□□□ -2.63
SCN1AP35498 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.35□□□□□ -2.63
SCN1AP35498 RNU6-228P-201ENST00000362700 106 ntBASIC-1.35□□□□□ -2.63
SCN1AP35498 RNU6-406P-201ENST00000516470 107 ntBASIC-1.35□□□□□ -2.63
SCN1AP35498 MIR548H1-201ENST00000408610 102 ntBASIC-1.36□□□□□ -2.63
SCN1AP35498 MIR6874-201ENST00000635894 71 ntBASIC-1.36□□□□□ -2.63
SCN1AP35498 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.37□□□□□ -2.63
SCN1AP35498 MIR3170-201ENST00000582699 77 ntBASIC-1.37□□□□□ -2.63
SCN1AP35498 MIR4484-201ENST00000582855 83 ntBASIC-1.37□□□□□ -2.63
SCN1AP35498 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.37□□□□□ -2.63
SCN1AP35498 RNU6-294P-201ENST00000364999 102 ntBASIC-1.38□□□□□ -2.63
SCN1AP35498 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.38□□□□□ -2.63
SCN1AP35498 SNORA41B-201ENST00000384785 128 ntBASIC-1.38□□□□□ -2.63
SCN1AP35498 RPL35AP4-201ENST00000412007 102 ntBASIC-1.38□□□□□ -2.63
SCN1AP35498 AC005520.4-201ENST00000604337 90 ntBASIC-1.38□□□□□ -2.63
SCN1AP35498 MIR1245B-201ENST00000636115 69 ntBASIC-1.38□□□□□ -2.63
SCN1AP35498 RNU6-983P-201ENST00000516004 103 ntBASIC-1.39□□□□□ -2.63
SCN1AP35498 RNU6-789P-201ENST00000517105 102 ntBASIC-1.39□□□□□ -2.63
SCN1AP35498 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.39□□□□□ -2.63
SCN1AP35498 IGLL4P-201ENST00000614590 133 ntBASIC-1.39□□□□□ -2.63
SCN1AP35498 RNU6-608P-201ENST00000383927 104 ntBASIC-1.39□□□□□ -2.63
SCN1AP35498 RNU6-540P-201ENST00000384622 101 ntBASIC-1.39□□□□□ -2.63
SCN1AP35498 MIR487B-201ENST00000385021 84 ntBASIC-1.39□□□□□ -2.63
SCN1AP35498 RNA5SP86-201ENST00000390869 98 ntBASIC-1.39□□□□□ -2.63
SCN1AP35498 RNU6-119P-201ENST00000364882 107 ntBASIC-1.4□□□□□ -2.63
SCN1AP35498 RNU6-841P-201ENST00000383872 107 ntBASIC-1.4□□□□□ -2.63
SCN1AP35498 AC108019.1-201ENST00000512540 175 ntBASIC-1.4□□□□□ -2.63
SCN1AP35498 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.4□□□□□ -2.63
SCN1AP35498 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.4□□□□□ -2.63
SCN1AP35498 MIR4666B-201ENST00000578142 81 ntBASIC-1.4□□□□□ -2.63
SCN1AP35498 MIR4756-201ENST00000577874 78 ntBASIC-1.41□□□□□ -2.64
SCN1AP35498 SNORD18.1-201ENST00000363807 70 ntBASIC-1.42□□□□□ -2.64
SCN1AP35498 RNU6-153P-201ENST00000364422 104 ntBASIC-1.42□□□□□ -2.64
SCN1AP35498 RNA5SP180-201ENST00000516181 101 ntBASIC-1.42□□□□□ -2.64
SCN1AP35498 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.42□□□□□ -2.64
SCN1AP35498 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.43□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 235.6 ms