Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 MIR3179-3-201ENST00000579566 84 ntBASIC-0.7□□□□□ -2.52
ERCC3P19447 MIR3179-4-201ENST00000617599 84 ntBASIC-0.7□□□□□ -2.52
ERCC3P19447 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.71□□□□□ -2.52
ERCC3P19447 MIR4436A-201ENST00000585278 85 ntBASIC-0.71□□□□□ -2.52
ERCC3P19447 RNA5SP331-201ENST00000364986 107 ntBASIC-0.72□□□□□ -2.52
ERCC3P19447 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.72□□□□□ -2.52
ERCC3P19447 MIR548AX-201ENST00000580117 73 ntBASIC-0.72□□□□□ -2.52
ERCC3P19447 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.73□□□□□ -2.53
ERCC3P19447 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.73□□□□□ -2.53
ERCC3P19447 RNU6-721P-201ENST00000410155 105 ntBASIC-0.73□□□□□ -2.53
ERCC3P19447 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.73□□□□□ -2.53
ERCC3P19447 U4.4-201ENST00000620626 117 ntBASIC-0.73□□□□□ -2.53
ERCC3P19447 RNU6-924P-201ENST00000362926 108 ntBASIC-0.74□□□□□ -2.53
ERCC3P19447 MT-TQ-201ENST00000387372 72 ntBASIC-0.74□□□□□ -2.53
ERCC3P19447 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.75□□□□□ -2.53
ERCC3P19447 RNU6-542P-201ENST00000516405 103 ntBASIC-0.75□□□□□ -2.53
ERCC3P19447 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.76□□□□□ -2.53
ERCC3P19447 MIR548AG1-201ENST00000579932 66 ntBASIC-0.76□□□□□ -2.53
ERCC3P19447 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.77□□□□□ -2.53
ERCC3P19447 RNU6-1296P-201ENST00000383879 107 ntBASIC-0.77□□□□□ -2.53
ERCC3P19447 AP000533.3-201ENST00000447704 118 ntBASIC-0.77□□□□□ -2.53
ERCC3P19447 MIR429-201ENST00000362106 83 ntBASIC-0.78□□□□□ -2.53
ERCC3P19447 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.79□□□□□ -2.54
ERCC3P19447 SNORD57-201ENST00000448188 72 ntBASIC-0.79□□□□□ -2.54
ERCC3P19447 RNA5SP266-201ENST00000410273 108 ntBASIC-0.8□□□□□ -2.54
ERCC3P19447 RNU6-539P-201ENST00000516665 103 ntBASIC-0.8□□□□□ -2.54
ERCC3P19447 U6.111-201ENST00000636093 83 ntBASIC-0.8□□□□□ -2.54
ERCC3P19447 SNORA25.4-201ENST00000363666 124 ntBASIC-0.81□□□□□ -2.54
ERCC3P19447 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.81□□□□□ -2.54
ERCC3P19447 RNU7-88P-201ENST00000458752 63 ntBASIC-0.82□□□□□ -2.54
ERCC3P19447 RNY1P9-201ENST00000532431 109 ntBASIC-0.83□□□□□ -2.54
ERCC3P19447 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.84□□□□□ -2.54
ERCC3P19447 RNU6-458P-201ENST00000384179 107 ntBASIC-0.84□□□□□ -2.54
ERCC3P19447 U6.58-201ENST00000613107 107 ntBASIC-0.84□□□□□ -2.54
ERCC3P19447 MIR196A1-201ENST00000388006 70 ntBASIC-0.85□□□□□ -2.55
ERCC3P19447 SCARNA17-201ENST00000516183 144 ntBASIC-0.85□□□□□ -2.55
ERCC3P19447 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.87□□□□□ -2.55
ERCC3P19447 RNU6-246P-201ENST00000384702 107 ntBASIC-0.88□□□□□ -2.55
ERCC3P19447 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.88□□□□□ -2.55
ERCC3P19447 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.88□□□□□ -2.55
ERCC3P19447 U7.5-201ENST00000517224 61 ntBASIC-0.88□□□□□ -2.55
ERCC3P19447 AC005520.4-201ENST00000604337 90 ntBASIC-0.88□□□□□ -2.55
ERCC3P19447 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.89□□□□□ -2.55
ERCC3P19447 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.89□□□□□ -2.55
ERCC3P19447 SNORD114-17-201ENST00000364699 75 ntBASIC-0.9□□□□□ -2.55
ERCC3P19447 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.91□□□□□ -2.56
ERCC3P19447 RNU6-800P-201ENST00000384473 103 ntBASIC-0.92□□□□□ -2.56
ERCC3P19447 RNU6-92P-201ENST00000605893 104 ntBASIC-0.92□□□□□ -2.56
ERCC3P19447 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.93□□□□□ -2.56
ERCC3P19447 AC114801.3-201ENST00000510231 177 ntBASIC-0.93□□□□□ -2.56
ERCC3P19447 MIR4324-201ENST00000584846 72 ntBASIC-0.94□□□□□ -2.56
ERCC3P19447 SNORD83B-201ENST00000386745 93 ntBASIC-0.95□□□□□ -2.56
ERCC3P19447 SNX3P1X-201ENST00000414887 175 ntBASIC-0.95□□□□□ -2.56
ERCC3P19447 SNORA41B-201ENST00000384785 128 ntBASIC-0.96□□□□□ -2.56
ERCC3P19447 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.96□□□□□ -2.56
ERCC3P19447 SNORA26.4-201ENST00000391188 123 ntBASIC-0.96□□□□□ -2.56
ERCC3P19447 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.96□□□□□ -2.56
ERCC3P19447 RNU6-732P-201ENST00000516033 103 ntBASIC-0.97□□□□□ -2.56
ERCC3P19447 SNORD116-16-201ENST00000384533 92 ntBASIC-0.98□□□□□ -2.57
ERCC3P19447 MIR147A-201ENST00000385079 72 ntBASIC-0.98□□□□□ -2.57
ERCC3P19447 MIR6738-201ENST00000619620 64 ntBASIC-0.98□□□□□ -2.57
ERCC3P19447 SNORD115-33-201ENST00000363723 82 ntBASIC-0.99□□□□□ -2.57
ERCC3P19447 RNU6-431P-201ENST00000383874 107 ntBASIC-1□□□□□ -2.57
ERCC3P19447 AL500527.2-201ENST00000454105 95 ntBASIC-1□□□□□ -2.57
ERCC3P19447 RNU6-1174P-201ENST00000517278 101 ntBASIC-1□□□□□ -2.57
ERCC3P19447 SNORD114-25-201ENST00000363742 72 ntBASIC-1.01□□□□□ -2.57
ERCC3P19447 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.01□□□□□ -2.57
ERCC3P19447 SNORD63.1-201ENST00000516178 80 ntBASIC-1.01□□□□□ -2.57
ERCC3P19447 AC103706.3-201ENST00000636297 85 ntBASIC-1.01□□□□□ -2.57
ERCC3P19447 RNU6-10P-201ENST00000384036 107 ntBASIC-1.02□□□□□ -2.57
ERCC3P19447 SNORD64-201ENST00000386683 67 ntBASIC-1.02□□□□□ -2.57
ERCC3P19447 MIR4511-201ENST00000582784 87 ntBASIC-1.02□□□□□ -2.57
ERCC3P19447 SNORA25.5-201ENST00000363782 126 ntBASIC-1.03□□□□□ -2.57
ERCC3P19447 MIR548Q-201ENST00000408404 100 ntBASIC-1.03□□□□□ -2.57
ERCC3P19447 RNU6-696P-201ENST00000390834 107 ntBASIC-1.04□□□□□ -2.58
ERCC3P19447 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.04□□□□□ -2.58
ERCC3P19447 RNA5SP192-201ENST00000364404 120 ntBASIC-1.05□□□□□ -2.58
ERCC3P19447 AL353691.2-201ENST00000443795 59 ntBASIC-1.05□□□□□ -2.58
ERCC3P19447 MIR378F-201ENST00000578143 78 ntBASIC-1.05□□□□□ -2.58
ERCC3P19447 MIR4499-201ENST00000584834 69 ntBASIC-1.05□□□□□ -2.58
ERCC3P19447 MIR587-201ENST00000384845 96 ntBASIC-1.06□□□□□ -2.58
ERCC3P19447 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.06□□□□□ -2.58
ERCC3P19447 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.06□□□□□ -2.58
ERCC3P19447 SNORD60.1-201ENST00000362451 73 ntBASIC-1.07□□□□□ -2.58
ERCC3P19447 MIR1468-201ENST00000410600 86 ntBASIC-1.07□□□□□ -2.58
ERCC3P19447 RNU6-598P-201ENST00000364017 105 ntBASIC-1.08□□□□□ -2.58
ERCC3P19447 SNORD19-201ENST00000391191 68 ntBASIC-1.08□□□□□ -2.58
ERCC3P19447 MIR3115-201ENST00000577915 68 ntBASIC-1.08□□□□□ -2.58
ERCC3P19447 U2.18-201ENST00000622185 84 ntBASIC-1.09□□□□□ -2.58
ERCC3P19447 MIR382-201ENST00000637119 76 ntBASIC-1.09□□□□□ -2.58
ERCC3P19447 uc_338.19-201ENST00000616808 99 ntBASIC-1.1□□□□□ -2.59
ERCC3P19447 AP002795.1-201ENST00000534879 84 ntBASIC-1.13□□□□□ -2.59
ERCC3P19447 SNORD1B-201ENST00000363091 84 ntBASIC-1.14□□□□□ -2.59
ERCC3P19447 snoU83B.1-201ENST00000517136 88 ntBASIC-1.14□□□□□ -2.59
ERCC3P19447 MIR5683-201ENST00000636514 76 ntBASIC-1.14□□□□□ -2.59
ERCC3P19447 MIR4306-201ENST00000583390 91 ntBASIC-1.16□□□□□ -2.6
ERCC3P19447 MIR4723-201ENST00000585070 81 ntBASIC-1.16□□□□□ -2.6
ERCC3P19447 RNU6-940P-201ENST00000363433 104 ntBASIC-1.17□□□□□ -2.6
ERCC3P19447 RNU6-172P-201ENST00000411000 93 ntBASIC-1.17□□□□□ -2.6
ERCC3P19447 MIR3165-201ENST00000579874 75 ntBASIC-1.17□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms