Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR508-201ENST00000384857 115 ntBASIC0.6□□□□□ -2.31
HIF3AQ9Y2N7 RNU7-88P-201ENST00000458752 63 ntBASIC0.59□□□□□ -2.31
HIF3AQ9Y2N7 MIRLET7D-201ENST00000362263 87 ntBASIC0.58□□□□□ -2.32
HIF3AQ9Y2N7 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.58□□□□□ -2.32
HIF3AQ9Y2N7 Y_RNA.698-201ENST00000516798 118 ntBASIC0.58□□□□□ -2.32
HIF3AQ9Y2N7 RNU7-151P-201ENST00000516930 53 ntBASIC0.58□□□□□ -2.32
HIF3AQ9Y2N7 MIR548X-201ENST00000580069 75 ntBASIC0.58□□□□□ -2.32
HIF3AQ9Y2N7 uc_338.17-201ENST00000619633 179 ntBASIC0.58□□□□□ -2.32
HIF3AQ9Y2N7 MIR6514-201ENST00000622549 70 ntBASIC0.58□□□□□ -2.32
HIF3AQ9Y2N7 RNA5SP62-201ENST00000363457 110 ntBASIC0.57□□□□□ -2.32
HIF3AQ9Y2N7 RNU6-1133P-201ENST00000410963 100 ntBASIC0.57□□□□□ -2.32
HIF3AQ9Y2N7 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HIF3AQ9Y2N7 AL391099.1-201ENST00000624635 187 ntBASIC0.56□□□□□ -2.32
HIF3AQ9Y2N7 RNU6-1262P-201ENST00000516217 96 ntBASIC0.55□□□□□ -2.32
HIF3AQ9Y2N7 U7.5-201ENST00000517224 61 ntBASIC0.55□□□□□ -2.32
HIF3AQ9Y2N7 MIR6513-201ENST00000621188 64 ntBASIC0.55□□□□□ -2.32
HIF3AQ9Y2N7 MIR6888-201ENST00000621977 67 ntBASIC0.55□□□□□ -2.32
HIF3AQ9Y2N7 MIR193B-201ENST00000384907 83 ntBASIC0.54□□□□□ -2.32
HIF3AQ9Y2N7 RNA5SP163-201ENST00000410304 99 ntBASIC0.54□□□□□ -2.32
HIF3AQ9Y2N7 MIR4464-201ENST00000580818 92 ntBASIC0.53□□□□□ -2.32
HIF3AQ9Y2N7 RNA5SP347-201ENST00000362445 119 ntBASIC0.52□□□□□ -2.33
HIF3AQ9Y2N7 SNORD114-23-201ENST00000363536 72 ntBASIC0.52□□□□□ -2.33
HIF3AQ9Y2N7 MIR92A1-201ENST00000385233 78 ntBASIC0.52□□□□□ -2.33
HIF3AQ9Y2N7 Y_RNA.69-201ENST00000362885 109 ntBASIC0.51□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-696P-201ENST00000390834 107 ntBASIC0.51□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-930P-201ENST00000390938 100 ntBASIC0.51□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-995P-201ENST00000391244 107 ntBASIC0.51□□□□□ -2.33
HIF3AQ9Y2N7 MIR5704-201ENST00000584029 77 ntBASIC0.51□□□□□ -2.33
HIF3AQ9Y2N7 AL445584.3-201ENST00000617173 78 ntBASIC0.51□□□□□ -2.33
HIF3AQ9Y2N7 AC090625.1-201ENST00000357130 210 ntBASIC0.5□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-455P-201ENST00000384681 107 ntBASIC0.5□□□□□ -2.33
HIF3AQ9Y2N7 MIR936-201ENST00000401264 98 ntBASIC0.5□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-1267P-201ENST00000410747 107 ntBASIC0.5□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-419P-201ENST00000517030 63 ntBASIC0.5□□□□□ -2.33
HIF3AQ9Y2N7 AC069113.3-201ENST00000521019 150 ntBASIC0.5□□□□□ -2.33
HIF3AQ9Y2N7 MIR1273G-201ENST00000577677 100 ntBASIC0.5□□□□□ -2.33
HIF3AQ9Y2N7 MIR5087-201ENST00000635826 76 ntBASIC0.5□□□□□ -2.33
HIF3AQ9Y2N7 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.5□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-924P-201ENST00000362926 108 ntBASIC0.48□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-973P-201ENST00000364690 107 ntBASIC0.48□□□□□ -2.33
HIF3AQ9Y2N7 MIR548AA1-201ENST00000384971 97 ntBASIC0.48□□□□□ -2.33
HIF3AQ9Y2N7 RNU7-55P-201ENST00000459426 62 ntBASIC0.48□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-1206P-201ENST00000516339 103 ntBASIC0.48□□□□□ -2.33
HIF3AQ9Y2N7 DLEU2_4.2-201ENST00000616613 58 ntBASIC0.48□□□□□ -2.33
HIF3AQ9Y2N7 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.47□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-1174P-201ENST00000517278 101 ntBASIC0.47□□□□□ -2.33
HIF3AQ9Y2N7 AC010487.4-201ENST00000637027 61 ntBASIC0.47□□□□□ -2.33
HIF3AQ9Y2N7 RNU6-1327P-201ENST00000365302 105 ntBASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 SNORA62.4-201ENST00000365504 151 ntBASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 RNU6-900P-201ENST00000384498 102 ntBASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 MIR593-201ENST00000384856 100 ntBASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 MIR329-2-201ENST00000385029 84 ntBASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 MIR548H2-201ENST00000408874 88 ntBASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 RNU7-160P-201ENST00000516660 62 ntBASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 CR383656.4-201ENST00000546909 122 ntBASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 MIR8068-201ENST00000618032 68 ntBASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.46□□□□□ -2.34
HIF3AQ9Y2N7 MIR6507-201ENST00000613630 70 ntBASIC0.45□□□□□ -2.34
HIF3AQ9Y2N7 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.45□□□□□ -2.34
HIF3AQ9Y2N7 SNORD57-201ENST00000448188 72 ntBASIC0.44□□□□□ -2.34
HIF3AQ9Y2N7 RNA5SP499-201ENST00000363982 119 ntBASIC0.43□□□□□ -2.34
HIF3AQ9Y2N7 RNU6-901P-201ENST00000384593 106 ntBASIC0.43□□□□□ -2.34
HIF3AQ9Y2N7 AC096531.1-201ENST00000419107 107 ntBASIC0.43□□□□□ -2.34
HIF3AQ9Y2N7 SNORD63.1-201ENST00000516178 80 ntBASIC0.43□□□□□ -2.34
HIF3AQ9Y2N7 MIR4711-201ENST00000578274 70 ntBASIC0.43□□□□□ -2.34
HIF3AQ9Y2N7 MIR924-201ENST00000638017 53 ntBASIC0.42□□□□□ -2.34
HIF3AQ9Y2N7 Y_RNA.139-201ENST00000363464 102 ntBASIC0.41□□□□□ -2.34
HIF3AQ9Y2N7 RNU6-828P-201ENST00000364876 107 ntBASIC0.41□□□□□ -2.34
HIF3AQ9Y2N7 MIR124-2-201ENST00000385081 109 ntBASIC0.41□□□□□ -2.34
HIF3AQ9Y2N7 RNU6-180P-201ENST00000516697 61 ntBASIC0.41□□□□□ -2.34
HIF3AQ9Y2N7 MIR148A-201ENST00000362215 68 ntBASIC0.4□□□□□ -2.35
HIF3AQ9Y2N7 MIR125B1-201ENST00000385236 88 ntBASIC0.4□□□□□ -2.35
HIF3AQ9Y2N7 MIR548F3-201ENST00000408509 87 ntBASIC0.4□□□□□ -2.35
HIF3AQ9Y2N7 RNA5SP193-201ENST00000410353 107 ntBASIC0.4□□□□□ -2.35
HIF3AQ9Y2N7 AC114737.2-201ENST00000421583 173 ntBASIC0.4□□□□□ -2.35
HIF3AQ9Y2N7 MIR4315-1-201ENST00000636800 73 ntBASIC0.4□□□□□ -2.35
HIF3AQ9Y2N7 MIR4315-2-201ENST00000640925 73 ntBASIC0.4□□□□□ -2.35
HIF3AQ9Y2N7 Y_RNA.115-201ENST00000363272 98 ntBASIC0.39□□□□□ -2.35
HIF3AQ9Y2N7 RNU6-974P-201ENST00000384099 108 ntBASIC0.39□□□□□ -2.35
HIF3AQ9Y2N7 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
HIF3AQ9Y2N7 MIR892B-201ENST00000401279 77 ntBASIC0.39□□□□□ -2.35
HIF3AQ9Y2N7 AL445193.1-201ENST00000441183 141 ntBASIC0.39□□□□□ -2.35
HIF3AQ9Y2N7 AC104408.1-201ENST00000605241 170 ntBASIC0.39□□□□□ -2.35
HIF3AQ9Y2N7 MIR6854-201ENST00000614935 69 ntBASIC0.39□□□□□ -2.35
HIF3AQ9Y2N7 Y_RNA.30-201ENST00000362572 97 ntBASIC0.38□□□□□ -2.35
HIF3AQ9Y2N7 SNORD56B-201ENST00000384713 71 ntBASIC0.38□□□□□ -2.35
HIF3AQ9Y2N7 MIR610-201ENST00000385139 96 ntBASIC0.38□□□□□ -2.35
HIF3AQ9Y2N7 AC244250.2-201ENST00000418731 148 ntBASIC0.38□□□□□ -2.35
HIF3AQ9Y2N7 MIR8087-201ENST00000612745 78 ntBASIC0.38□□□□□ -2.35
HIF3AQ9Y2N7 RNU6-838P-201ENST00000363399 108 ntBASIC0.37□□□□□ -2.35
HIF3AQ9Y2N7 Y_RNA.374-201ENST00000365606 101 ntBASIC0.37□□□□□ -2.35
HIF3AQ9Y2N7 Y_RNA.613-201ENST00000410726 97 ntBASIC0.37□□□□□ -2.35
HIF3AQ9Y2N7 RNA5SP134-201ENST00000516492 96 ntBASIC0.37□□□□□ -2.35
HIF3AQ9Y2N7 RNU6-1238P-201ENST00000517215 102 ntBASIC0.37□□□□□ -2.35
HIF3AQ9Y2N7 RNU6-247P-201ENST00000362636 107 ntBASIC0.36□□□□□ -2.35
HIF3AQ9Y2N7 MIR545-201ENST00000385085 106 ntBASIC0.36□□□□□ -2.35
HIF3AQ9Y2N7 RNU6-732P-201ENST00000516033 103 ntBASIC0.36□□□□□ -2.35
HIF3AQ9Y2N7 SNORD63.2-201ENST00000516303 64 ntBASIC0.36□□□□□ -2.35
HIF3AQ9Y2N7 RNA5SP330-201ENST00000517096 96 ntBASIC0.36□□□□□ -2.35
HIF3AQ9Y2N7 SNORD114-5-201ENST00000362928 70 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 243.1 ms