Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 Y_RNA.246-201ENST00000364495 108 ntBASIC0.23□□□□□ -2.37
CCDC87Q9NVE4 SNORD114-9-201ENST00000364370 72 ntBASIC0.22□□□□□ -2.37
CCDC87Q9NVE4 RNU6-900P-201ENST00000384498 102 ntBASIC0.21□□□□□ -2.38
CCDC87Q9NVE4 MIR630-201ENST00000384957 97 ntBASIC0.21□□□□□ -2.38
CCDC87Q9NVE4 MIR519A2-201ENST00000384990 87 ntBASIC0.21□□□□□ -2.38
CCDC87Q9NVE4 RNU6-92P-201ENST00000605893 104 ntBASIC0.2□□□□□ -2.38
CCDC87Q9NVE4 snoR1.1-201ENST00000628177 80 ntBASIC0.2□□□□□ -2.38
CCDC87Q9NVE4 RNU7-55P-201ENST00000459426 62 ntBASIC0.19□□□□□ -2.38
CCDC87Q9NVE4 SNORA25.5-201ENST00000363782 126 ntBASIC0.18□□□□□ -2.38
CCDC87Q9NVE4 SNORD115-23-201ENST00000364461 82 ntBASIC0.18□□□□□ -2.38
CCDC87Q9NVE4 RNU6-669P-201ENST00000365575 107 ntBASIC0.18□□□□□ -2.38
CCDC87Q9NVE4 AC110620.1-201ENST00000416042 228 ntBASIC0.18□□□□□ -2.38
CCDC87Q9NVE4 MIR5589-201ENST00000579442 60 ntBASIC0.18□□□□□ -2.38
CCDC87Q9NVE4 MIR6507-201ENST00000613630 70 ntBASIC0.18□□□□□ -2.38
CCDC87Q9NVE4 U4.4-201ENST00000620626 117 ntBASIC0.18□□□□□ -2.38
CCDC87Q9NVE4 Y_RNA.74-201ENST00000362911 99 ntBASIC0.17□□□□□ -2.38
CCDC87Q9NVE4 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
CCDC87Q9NVE4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.17□□□□□ -2.38
CCDC87Q9NVE4 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.17□□□□□ -2.38
CCDC87Q9NVE4 RNU6-46P-201ENST00000383860 107 ntBASIC0.15□□□□□ -2.39
CCDC87Q9NVE4 RNU6-455P-201ENST00000384681 107 ntBASIC0.15□□□□□ -2.39
CCDC87Q9NVE4 MIR1295A-201ENST00000408463 79 ntBASIC0.15□□□□□ -2.39
CCDC87Q9NVE4 RNU6-1133P-201ENST00000410963 100 ntBASIC0.15□□□□□ -2.39
CCDC87Q9NVE4 AC104692.1-201ENST00000472406 90 ntBASIC0.15□□□□□ -2.39
CCDC87Q9NVE4 MIR4432-201ENST00000581823 84 ntBASIC0.15□□□□□ -2.39
CCDC87Q9NVE4 MIR4802-201ENST00000581881 80 ntBASIC0.15□□□□□ -2.39
CCDC87Q9NVE4 MIR4768-201ENST00000585270 74 ntBASIC0.15□□□□□ -2.39
CCDC87Q9NVE4 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.15□□□□□ -2.39
CCDC87Q9NVE4 RNU6-973P-201ENST00000364690 107 ntBASIC0.14□□□□□ -2.39
CCDC87Q9NVE4 SNORD114-5-201ENST00000362928 70 ntBASIC0.13□□□□□ -2.39
CCDC87Q9NVE4 AL353803.5-201ENST00000599815 141 ntBASIC0.13□□□□□ -2.39
CCDC87Q9NVE4 AL391099.1-201ENST00000624635 187 ntBASIC0.13□□□□□ -2.39
CCDC87Q9NVE4 RNU6-940P-201ENST00000363433 104 ntBASIC0.12□□□□□ -2.39
CCDC87Q9NVE4 MIR9-2-201ENST00000384838 87 ntBASIC0.12□□□□□ -2.39
CCDC87Q9NVE4 Y_RNA.325-201ENST00000365171 122 ntBASIC0.11□□□□□ -2.39
CCDC87Q9NVE4 SNORA62.4-201ENST00000365504 151 ntBASIC0.11□□□□□ -2.39
CCDC87Q9NVE4 MIR4290-201ENST00000583807 95 ntBASIC0.09□□□□□ -2.4
CCDC87Q9NVE4 MIR1295B-201ENST00000636144 60 ntBASIC0.09□□□□□ -2.4
CCDC87Q9NVE4 RNA5SP192-201ENST00000364404 120 ntBASIC0.08□□□□□ -2.4
CCDC87Q9NVE4 RNU6-122P-201ENST00000516818 107 ntBASIC0.08□□□□□ -2.4
CCDC87Q9NVE4 MIR429-201ENST00000362106 83 ntBASIC0.07□□□□□ -2.4
CCDC87Q9NVE4 AC244250.2-201ENST00000418731 148 ntBASIC0.07□□□□□ -2.4
CCDC87Q9NVE4 AC096531.1-201ENST00000419107 107 ntBASIC0.07□□□□□ -2.4
CCDC87Q9NVE4 MIR371B-201ENST00000638082 66 ntBASIC0.07□□□□□ -2.4
CCDC87Q9NVE4 MIR527-201ENST00000385244 85 ntBASIC0.06□□□□□ -2.4
CCDC87Q9NVE4 SNORD60.1-201ENST00000362451 73 ntBASIC0.05□□□□□ -2.4
CCDC87Q9NVE4 RNU6-1184P-201ENST00000384588 108 ntBASIC0.05□□□□□ -2.4
CCDC87Q9NVE4 RNU6-1246P-201ENST00000391064 107 ntBASIC0.05□□□□□ -2.4
CCDC87Q9NVE4 Y_RNA.282-201ENST00000364793 102 ntBASIC0.04□□□□□ -2.4
CCDC87Q9NVE4 RNU6-929P-201ENST00000384429 107 ntBASIC0.04□□□□□ -2.4
CCDC87Q9NVE4 RNU6-901P-201ENST00000384593 106 ntBASIC0.04□□□□□ -2.4
CCDC87Q9NVE4 MIR4667-201ENST00000578933 66 ntBASIC0.04□□□□□ -2.4
CCDC87Q9NVE4 uc_338.36-201ENST00000622331 158 ntBASIC0.04□□□□□ -2.4
CCDC87Q9NVE4 SNORD49B-201ENST00000365172 72 ntBASIC0.03□□□□□ -2.4
CCDC87Q9NVE4 AL627230.5-201ENST00000619807 58 ntBASIC0.03□□□□□ -2.4
CCDC87Q9NVE4 MIR655-201ENST00000362159 97 ntBASIC0.02□□□□□ -2.41
CCDC87Q9NVE4 Y_RNA.185-201ENST00000363894 100 ntBASIC0.02□□□□□ -2.41
CCDC87Q9NVE4 SNORD116-16-201ENST00000384533 92 ntBASIC0.02□□□□□ -2.41
CCDC87Q9NVE4 Z95118.1-201ENST00000421372 247 ntBASIC0.01□□□□□ -2.41
CCDC87Q9NVE4 SNORD114-16-201ENST00000363044 70 ntBASIC0□□□□□ -2.41
CCDC87Q9NVE4 RNA5SP25-201ENST00000410815 110 ntBASIC0□□□□□ -2.41
CCDC87Q9NVE4 MIR466-201ENST00000580653 84 ntBASIC0□□□□□ -2.41
CCDC87Q9NVE4 AC108676.2-201ENST00000605225 163 ntBASIC0□□□□□ -2.41
CCDC87Q9NVE4 SNORA18.1-201ENST00000363418 128 ntBASIC-0.02□□□□□ -2.41
CCDC87Q9NVE4 SNORA41B-201ENST00000384785 128 ntBASIC-0.02□□□□□ -2.41
CCDC87Q9NVE4 IGLVI-20-201ENST00000519296 130 ntBASIC-0.02□□□□□ -2.41
CCDC87Q9NVE4 MIR4263-201ENST00000584745 83 ntBASIC-0.03□□□□□ -2.41
CCDC87Q9NVE4 RNU6-246P-201ENST00000384702 107 ntBASIC-0.04□□□□□ -2.42
CCDC87Q9NVE4 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.04□□□□□ -2.42
CCDC87Q9NVE4 snoU13.19-201ENST00000459148 104 ntBASIC-0.04□□□□□ -2.42
CCDC87Q9NVE4 MIR3938-201ENST00000582157 103 ntBASIC-0.04□□□□□ -2.42
CCDC87Q9NVE4 MIR6854-201ENST00000614935 69 ntBASIC-0.04□□□□□ -2.42
CCDC87Q9NVE4 MIR548AG1-201ENST00000579932 66 ntBASIC-0.05□□□□□ -2.42
CCDC87Q9NVE4 SNORD114-31-201ENST00000363219 75 ntBASIC-0.06□□□□□ -2.42
CCDC87Q9NVE4 SNORD56B-201ENST00000384713 71 ntBASIC-0.06□□□□□ -2.42
CCDC87Q9NVE4 RNU6-758P-201ENST00000516292 89 ntBASIC-0.06□□□□□ -2.42
CCDC87Q9NVE4 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.07□□□□□ -2.42
CCDC87Q9NVE4 RNU6-458P-201ENST00000384179 107 ntBASIC-0.07□□□□□ -2.42
CCDC87Q9NVE4 MIR4464-201ENST00000580818 92 ntBASIC-0.07□□□□□ -2.42
CCDC87Q9NVE4 U6.58-201ENST00000613107 107 ntBASIC-0.07□□□□□ -2.42
CCDC87Q9NVE4 AL445584.3-201ENST00000617173 78 ntBASIC-0.08□□□□□ -2.42
CCDC87Q9NVE4 MIR6888-201ENST00000621977 67 ntBASIC-0.08□□□□□ -2.42
CCDC87Q9NVE4 SNORD114-12-201ENST00000365400 75 ntBASIC-0.1□□□□□ -2.43
CCDC87Q9NVE4 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.1□□□□□ -2.43
CCDC87Q9NVE4 MIR4493-201ENST00000584016 73 ntBASIC-0.1□□□□□ -2.43
CCDC87Q9NVE4 MIR3666-201ENST00000607845 111 ntBASIC-0.1□□□□□ -2.43
CCDC87Q9NVE4 RNU6-924P-201ENST00000362926 108 ntBASIC-0.11□□□□□ -2.43
CCDC87Q9NVE4 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.11□□□□□ -2.43
CCDC87Q9NVE4 RNU6-499P-201ENST00000365615 107 ntBASIC-0.11□□□□□ -2.43
CCDC87Q9NVE4 RNA5SP66-201ENST00000517178 101 ntBASIC-0.11□□□□□ -2.43
CCDC87Q9NVE4 MIR5704-201ENST00000584029 77 ntBASIC-0.11□□□□□ -2.43
CCDC87Q9NVE4 AP001180.6-201ENST00000584918 159 ntBASIC-0.11□□□□□ -2.43
CCDC87Q9NVE4 MIR4280-201ENST00000582178 76 ntBASIC-0.12□□□□□ -2.43
CCDC87Q9NVE4 SNORD4A-201ENST00000459174 72 ntBASIC-0.14□□□□□ -2.43
CCDC87Q9NVE4 RNU7-119P-201ENST00000459279 63 ntBASIC-0.14□□□□□ -2.43
CCDC87Q9NVE4 SNORD114-15-201ENST00000364687 72 ntBASIC-0.15□□□□□ -2.43
CCDC87Q9NVE4 RNU6-520P-201ENST00000384717 104 ntBASIC-0.15□□□□□ -2.43
CCDC87Q9NVE4 AL445193.1-201ENST00000441183 141 ntBASIC-0.15□□□□□ -2.43
CCDC87Q9NVE4 AL590491.3-201ENST00000610731 82 ntBASIC-0.15□□□□□ -2.43
CCDC87Q9NVE4 MIR214-201ENST00000385214 110 ntBASIC-0.16□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 217 ms