Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.79□□□□□ -2.7
SCN9AQ15858 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.8□□□□□ -2.7
SCN9AQ15858 RNU6-698P-201ENST00000363523 107 ntBASIC-1.8□□□□□ -2.7
SCN9AQ15858 RNU6-34P-201ENST00000364874 107 ntBASIC-1.8□□□□□ -2.7
SCN9AQ15858 AC108019.1-201ENST00000512540 175 ntBASIC-1.8□□□□□ -2.7
SCN9AQ15858 RNU6-478P-201ENST00000363904 110 ntBASIC-1.81□□□□□ -2.7
SCN9AQ15858 RNU7-200P-201ENST00000516105 62 ntBASIC-1.81□□□□□ -2.7
SCN9AQ15858 RNU6-971P-201ENST00000516920 106 ntBASIC-1.81□□□□□ -2.7
SCN9AQ15858 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.81□□□□□ -2.7
SCN9AQ15858 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.81□□□□□ -2.7
SCN9AQ15858 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.81□□□□□ -2.7
SCN9AQ15858 U4.4-201ENST00000620626 117 ntBASIC-1.81□□□□□ -2.7
SCN9AQ15858 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.82□□□□□ -2.7
SCN9AQ15858 RNU7-153P-201ENST00000516455 62 ntBASIC-1.82□□□□□ -2.7
SCN9AQ15858 AC120024.2-201ENST00000576526 175 ntBASIC-1.82□□□□□ -2.7
SCN9AQ15858 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.83□□□□□ -2.7
SCN9AQ15858 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.83□□□□□ -2.7
SCN9AQ15858 U7.3-201ENST00000616123 62 ntBASIC-1.83□□□□□ -2.7
SCN9AQ15858 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.83□□□□□ -2.7
SCN9AQ15858 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.83□□□□□ -2.7
SCN9AQ15858 MIR548AG1-201ENST00000579932 66 ntBASIC-1.83□□□□□ -2.7
SCN9AQ15858 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.84□□□□□ -2.7
SCN9AQ15858 MIR4756-201ENST00000577874 78 ntBASIC-1.84□□□□□ -2.7
SCN9AQ15858 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.85□□□□□ -2.7
SCN9AQ15858 RPL35AP4-201ENST00000412007 102 ntBASIC-1.85□□□□□ -2.7
SCN9AQ15858 MIR1297-201ENST00000637311 77 ntBASIC-1.85□□□□□ -2.7
SCN9AQ15858 RNU6-645P-201ENST00000364649 106 ntBASIC-1.85□□□□□ -2.71
SCN9AQ15858 MIR548AA1-201ENST00000384971 97 ntBASIC-1.85□□□□□ -2.71
SCN9AQ15858 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.85□□□□□ -2.71
SCN9AQ15858 RNA5SP215-201ENST00000363440 122 ntBASIC-1.86□□□□□ -2.71
SCN9AQ15858 RNU6-694P-201ENST00000364071 147 ntBASIC-1.86□□□□□ -2.71
SCN9AQ15858 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.86□□□□□ -2.71
SCN9AQ15858 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.86□□□□□ -2.71
SCN9AQ15858 RNU6-303P-201ENST00000517091 106 ntBASIC-1.86□□□□□ -2.71
SCN9AQ15858 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.87□□□□□ -2.71
SCN9AQ15858 RNU6-463P-201ENST00000384340 107 ntBASIC-1.87□□□□□ -2.71
SCN9AQ15858 SNORD116-21-201ENST00000384507 92 ntBASIC-1.87□□□□□ -2.71
SCN9AQ15858 MIR590-201ENST00000385008 97 ntBASIC-1.87□□□□□ -2.71
SCN9AQ15858 MIR487B-201ENST00000385021 84 ntBASIC-1.87□□□□□ -2.71
SCN9AQ15858 MTND4LP1-201ENST00000446263 157 ntBASIC-1.88□□□□□ -2.71
SCN9AQ15858 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.88□□□□□ -2.71
SCN9AQ15858 RNA5SP405-201ENST00000363059 114 ntBASIC-1.89□□□□□ -2.71
SCN9AQ15858 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.89□□□□□ -2.71
SCN9AQ15858 MIR630-201ENST00000384957 97 ntBASIC-1.89□□□□□ -2.71
SCN9AQ15858 RNU6-841P-201ENST00000383872 107 ntBASIC-1.89□□□□□ -2.71
SCN9AQ15858 RNU6-659P-201ENST00000516454 104 ntBASIC-1.89□□□□□ -2.71
SCN9AQ15858 RNU6-608P-201ENST00000383927 104 ntBASIC-1.9□□□□□ -2.71
SCN9AQ15858 SNORD116-22-201ENST00000384430 92 ntBASIC-1.9□□□□□ -2.71
SCN9AQ15858 RNU6-633P-201ENST00000362612 103 ntBASIC-1.9□□□□□ -2.71
SCN9AQ15858 RNU6-587P-201ENST00000391282 106 ntBASIC-1.9□□□□□ -2.71
SCN9AQ15858 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.9□□□□□ -2.71
SCN9AQ15858 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.91□□□□□ -2.72
SCN9AQ15858 MIR548V-201ENST00000584165 80 ntBASIC-1.91□□□□□ -2.72
SCN9AQ15858 MIR8053-201ENST00000613344 75 ntBASIC-1.91□□□□□ -2.72
SCN9AQ15858 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.91□□□□□ -2.72
SCN9AQ15858 RNU6-886P-201ENST00000384319 105 ntBASIC-1.92□□□□□ -2.72
SCN9AQ15858 RNU6-1011P-201ENST00000384668 107 ntBASIC-1.92□□□□□ -2.72
SCN9AQ15858 RNU6-982P-201ENST00000516216 102 ntBASIC-1.92□□□□□ -2.72
SCN9AQ15858 RNU6-162P-201ENST00000516228 103 ntBASIC-1.92□□□□□ -2.72
SCN9AQ15858 RNU6-106P-201ENST00000384405 107 ntBASIC-1.92□□□□□ -2.72
SCN9AQ15858 MTATP8P2-201ENST00000435212 202 ntBASIC-1.92□□□□□ -2.72
SCN9AQ15858 RNU6-247P-201ENST00000362636 107 ntBASIC-1.93□□□□□ -2.72
SCN9AQ15858 SNORA8.1-201ENST00000384250 140 ntBASIC-1.93□□□□□ -2.72
SCN9AQ15858 SNORA19-201ENST00000384737 128 ntBASIC-1.94□□□□□ -2.72
SCN9AQ15858 MIR548C-201ENST00000384815 97 ntBASIC-1.94□□□□□ -2.72
SCN9AQ15858 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.94□□□□□ -2.72
SCN9AQ15858 MIR3170-201ENST00000582699 77 ntBASIC-1.94□□□□□ -2.72
SCN9AQ15858 RNY1P5-201ENST00000383890 115 ntBASIC-1.95□□□□□ -2.72
SCN9AQ15858 RNU6-129P-201ENST00000391022 107 ntBASIC-1.95□□□□□ -2.72
SCN9AQ15858 AC006160.2-201ENST00000637708 154 ntBASIC-1.95□□□□□ -2.72
SCN9AQ15858 RNU6-907P-201ENST00000390924 102 ntBASIC-1.96□□□□□ -2.72
SCN9AQ15858 SNORD113-2-201ENST00000391082 72 ntBASIC-1.96□□□□□ -2.72
SCN9AQ15858 RNU6-554P-201ENST00000410466 106 ntBASIC-1.96□□□□□ -2.72
SCN9AQ15858 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.96□□□□□ -2.72
SCN9AQ15858 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.97□□□□□ -2.72
SCN9AQ15858 MIR1302-5-201ENST00000408164 150 ntBASIC-1.97□□□□□ -2.72
SCN9AQ15858 RNU6-980P-201ENST00000516925 103 ntBASIC-1.97□□□□□ -2.72
SCN9AQ15858 MIR548AM-201ENST00000584298 74 ntBASIC-1.97□□□□□ -2.72
SCN9AQ15858 AC005520.4-201ENST00000604337 90 ntBASIC-1.97□□□□□ -2.72
SCN9AQ15858 RNU6-755P-201ENST00000364400 103 ntBASIC-1.98□□□□□ -2.73
SCN9AQ15858 SNORD116-16-201ENST00000384533 92 ntBASIC-1.98□□□□□ -2.73
SCN9AQ15858 RNY4P18-201ENST00000391107 89 ntBASIC-1.98□□□□□ -2.73
SCN9AQ15858 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.98□□□□□ -2.73
SCN9AQ15858 U2.18-201ENST00000622185 84 ntBASIC-1.98□□□□□ -2.73
SCN9AQ15858 SNORD45.1-201ENST00000363181 77 ntBASIC-1.98□□□□□ -2.73
SCN9AQ15858 MIR496-201ENST00000385226 102 ntBASIC-1.98□□□□□ -2.73
SCN9AQ15858 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.98□□□□□ -2.73
SCN9AQ15858 RNU7-151P-201ENST00000516930 53 ntBASIC-1.98□□□□□ -2.73
SCN9AQ15858 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.99□□□□□ -2.73
SCN9AQ15858 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.99□□□□□ -2.73
SCN9AQ15858 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.99□□□□□ -2.73
SCN9AQ15858 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.99□□□□□ -2.73
SCN9AQ15858 MIR3123-201ENST00000583417 75 ntBASIC-1.99□□□□□ -2.73
SCN9AQ15858 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.99□□□□□ -2.73
SCN9AQ15858 RNA5SP93-201ENST00000362525 114 ntBASIC-2□□□□□ -2.73
SCN9AQ15858 SNORD113.1-201ENST00000363280 73 ntBASIC-2□□□□□ -2.73
SCN9AQ15858 RNU6-1034P-201ENST00000365335 101 ntBASIC-2□□□□□ -2.73
SCN9AQ15858 Y_RNA.607-201ENST00000410597 98 ntBASIC-2□□□□□ -2.73
SCN9AQ15858 AC074348.1-201ENST00000426503 132 ntBASIC-2□□□□□ -2.73
SCN9AQ15858 RNU6-118P-201ENST00000516552 102 ntBASIC-2□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms