Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SNORA2.1-201ENST00000363089 137 ntBASIC-1.06□□□□□ -2.58
DDX28Q9NUL7 RNU6-106P-201ENST00000384405 107 ntBASIC-1.06□□□□□ -2.58
DDX28Q9NUL7 AL691482.2-201ENST00000457453 84 ntBASIC-1.06□□□□□ -2.58
DDX28Q9NUL7 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.07□□□□□ -2.58
DDX28Q9NUL7 RNU6-554P-201ENST00000410466 106 ntBASIC-1.07□□□□□ -2.58
DDX28Q9NUL7 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.07□□□□□ -2.58
DDX28Q9NUL7 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.07□□□□□ -2.58
DDX28Q9NUL7 snoU83B.1-201ENST00000517136 88 ntBASIC-1.08□□□□□ -2.58
DDX28Q9NUL7 CYP3A54P-201ENST00000566950 75 ntBASIC-1.08□□□□□ -2.58
DDX28Q9NUL7 U6.81-201ENST00000612550 106 ntBASIC-1.09□□□□□ -2.58
DDX28Q9NUL7 AL365222.1-201ENST00000614661 98 ntBASIC-1.09□□□□□ -2.58
DDX28Q9NUL7 RNU6-834P-201ENST00000362367 110 ntBASIC-1.1□□□□□ -2.59
DDX28Q9NUL7 RNU7-134P-201ENST00000458997 64 ntBASIC-1.1□□□□□ -2.59
DDX28Q9NUL7 RNU6-109P-201ENST00000516364 107 ntBASIC-1.1□□□□□ -2.59
DDX28Q9NUL7 RNU6-184P-201ENST00000516514 107 ntBASIC-1.1□□□□□ -2.59
DDX28Q9NUL7 U7.3-201ENST00000616123 62 ntBASIC-1.1□□□□□ -2.59
DDX28Q9NUL7 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.11□□□□□ -2.59
DDX28Q9NUL7 SNORD63.1-201ENST00000516178 80 ntBASIC-1.11□□□□□ -2.59
DDX28Q9NUL7 RNU6-162P-201ENST00000516228 103 ntBASIC-1.11□□□□□ -2.59
DDX28Q9NUL7 MIR378F-201ENST00000578143 78 ntBASIC-1.11□□□□□ -2.59
DDX28Q9NUL7 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.12□□□□□ -2.59
DDX28Q9NUL7 RNU6-1056P-201ENST00000383996 107 ntBASIC-1.12□□□□□ -2.59
DDX28Q9NUL7 MIR6129-201ENST00000616087 109 ntBASIC-1.12□□□□□ -2.59
DDX28Q9NUL7 SNORA19-201ENST00000384737 128 ntBASIC-1.13□□□□□ -2.59
DDX28Q9NUL7 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.13□□□□□ -2.59
DDX28Q9NUL7 RNU6-924P-201ENST00000362926 108 ntBASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 SNORD115-22-201ENST00000364456 82 ntBASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 MIR521-2-201ENST00000384818 87 ntBASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 MIR519A2-201ENST00000384990 87 ntBASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 RNU2-51P-201ENST00000410708 197 ntBASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 RNU6-589P-201ENST00000516485 107 ntBASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 MIR548AG1-201ENST00000579932 66 ntBASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 U4.2-201ENST00000618561 85 ntBASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.14□□□□□ -2.59
DDX28Q9NUL7 RNU6-766P-201ENST00000362478 107 ntBASIC-1.15□□□□□ -2.59
DDX28Q9NUL7 RNU6-24P-201ENST00000384440 107 ntBASIC-1.15□□□□□ -2.59
DDX28Q9NUL7 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.15□□□□□ -2.59
DDX28Q9NUL7 SNORA26.4-201ENST00000391188 123 ntBASIC-1.15□□□□□ -2.59
DDX28Q9NUL7 AL450471.1-201ENST00000447509 127 ntBASIC-1.15□□□□□ -2.59
DDX28Q9NUL7 RNU6-752P-201ENST00000516376 102 ntBASIC-1.15□□□□□ -2.59
DDX28Q9NUL7 RNU7-153P-201ENST00000516455 62 ntBASIC-1.15□□□□□ -2.59
DDX28Q9NUL7 RNA5SP192-201ENST00000364404 120 ntBASIC-1.16□□□□□ -2.6
DDX28Q9NUL7 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.16□□□□□ -2.6
DDX28Q9NUL7 MIR548M-201ENST00000408260 86 ntBASIC-1.16□□□□□ -2.6
DDX28Q9NUL7 RNU6-518P-201ENST00000516056 96 ntBASIC-1.16□□□□□ -2.6
DDX28Q9NUL7 MIR3115-201ENST00000577915 68 ntBASIC-1.16□□□□□ -2.6
DDX28Q9NUL7 MIR6739-201ENST00000622461 75 ntBASIC-1.16□□□□□ -2.6
DDX28Q9NUL7 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.17□□□□□ -2.6
DDX28Q9NUL7 MT-TR-201ENST00000387439 65 ntBASIC-1.17□□□□□ -2.6
DDX28Q9NUL7 RNU7-154P-201ENST00000516194 62 ntBASIC-1.17□□□□□ -2.6
DDX28Q9NUL7 RNU6-158P-201ENST00000517104 100 ntBASIC-1.17□□□□□ -2.6
DDX28Q9NUL7 RNU6-22P-201ENST00000384355 107 ntBASIC-1.18□□□□□ -2.6
DDX28Q9NUL7 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 SNORD115-33-201ENST00000363723 82 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 RNU6-681P-201ENST00000364012 104 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 SNORD115-27-201ENST00000364430 82 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 MIR519C-201ENST00000385053 87 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 MTATP8P2-201ENST00000435212 202 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 MIR2052-201ENST00000636055 55 ntBASIC-1.19□□□□□ -2.6
DDX28Q9NUL7 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.2□□□□□ -2.6
DDX28Q9NUL7 MIR3165-201ENST00000579874 75 ntBASIC-1.2□□□□□ -2.6
DDX28Q9NUL7 MIR29B1-201ENST00000385015 81 ntBASIC-1.21□□□□□ -2.6
DDX28Q9NUL7 RNU7-88P-201ENST00000458752 63 ntBASIC-1.21□□□□□ -2.6
DDX28Q9NUL7 AP002795.1-201ENST00000534879 84 ntBASIC-1.21□□□□□ -2.6
DDX28Q9NUL7 MIR6818-201ENST00000621576 65 ntBASIC-1.21□□□□□ -2.6
DDX28Q9NUL7 RNU6-340P-201ENST00000364005 107 ntBASIC-1.22□□□□□ -2.6
DDX28Q9NUL7 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.22□□□□□ -2.6
DDX28Q9NUL7 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.22□□□□□ -2.6
DDX28Q9NUL7 RNU6-479P-201ENST00000516348 105 ntBASIC-1.22□□□□□ -2.6
DDX28Q9NUL7 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.22□□□□□ -2.6
DDX28Q9NUL7 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.22□□□□□ -2.6
DDX28Q9NUL7 RNA5SP26-201ENST00000362406 119 ntBASIC-1.23□□□□□ -2.61
DDX28Q9NUL7 RNU6-246P-201ENST00000384702 107 ntBASIC-1.23□□□□□ -2.61
DDX28Q9NUL7 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.23□□□□□ -2.61
DDX28Q9NUL7 SNORD77.2-201ENST00000391045 68 ntBASIC-1.23□□□□□ -2.61
DDX28Q9NUL7 MIR8485-201ENST00000401372 91 ntBASIC-1.23□□□□□ -2.61
DDX28Q9NUL7 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.23□□□□□ -2.61
DDX28Q9NUL7 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.23□□□□□ -2.61
DDX28Q9NUL7 AC132825.6-201ENST00000638861 357 ntBASIC-1.23□□□□□ -2.61
DDX28Q9NUL7 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.24□□□□□ -2.61
DDX28Q9NUL7 MIR507-201ENST00000385234 94 ntBASIC-1.24□□□□□ -2.61
DDX28Q9NUL7 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.24□□□□□ -2.61
DDX28Q9NUL7 AL035461.1-201ENST00000421490 332 ntBASIC-1.24□□□□□ -2.61
DDX28Q9NUL7 RNU6-732P-201ENST00000516033 103 ntBASIC-1.24□□□□□ -2.61
DDX28Q9NUL7 RNA5SP461-201ENST00000516451 104 ntBASIC-1.24□□□□□ -2.61
DDX28Q9NUL7 RNU6-656P-201ENST00000516785 107 ntBASIC-1.24□□□□□ -2.61
DDX28Q9NUL7 SNORD115-37-201ENST00000363768 82 ntBASIC-1.25□□□□□ -2.61
DDX28Q9NUL7 RNU4-61P-201ENST00000411243 107 ntBASIC-1.25□□□□□ -2.61
DDX28Q9NUL7 AL021921.1-201ENST00000442774 93 ntBASIC-1.25□□□□□ -2.61
DDX28Q9NUL7 AL353691.2-201ENST00000443795 59 ntBASIC-1.25□□□□□ -2.61
DDX28Q9NUL7 AL031737.1-201ENST00000450125 223 ntBASIC-1.25□□□□□ -2.61
DDX28Q9NUL7 U7.5-201ENST00000517224 61 ntBASIC-1.25□□□□□ -2.61
DDX28Q9NUL7 MIR4306-201ENST00000583390 91 ntBASIC-1.25□□□□□ -2.61
DDX28Q9NUL7 RNU6-633P-201ENST00000362612 103 ntBASIC-1.26□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 221.6 ms