Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 MIR499B-201ENST00000636498 73 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 MIR20A-201ENST00000362279 71 ntBASIC0.45□□□□□ -2.34
EBF3Q9H4W6 AC244090.1-201ENST00000441884 93 ntBASIC0.45□□□□□ -2.34
EBF3Q9H4W6 SCARNA21.1-201ENST00000515996 128 ntBASIC0.45□□□□□ -2.34
EBF3Q9H4W6 RNU7-174P-201ENST00000516248 59 ntBASIC0.45□□□□□ -2.34
EBF3Q9H4W6 MIR548V-201ENST00000584165 80 ntBASIC0.45□□□□□ -2.34
EBF3Q9H4W6 RN7SL660P-201ENST00000614852 299 ntBASIC0.45□□□□□ -2.34
EBF3Q9H4W6 RNA5SP215-201ENST00000363440 122 ntBASIC0.44□□□□□ -2.34
EBF3Q9H4W6 VTRNA1-3-201ENST00000365645 89 ntBASIC0.44□□□□□ -2.34
EBF3Q9H4W6 MIR548C-201ENST00000384815 97 ntBASIC0.44□□□□□ -2.34
EBF3Q9H4W6 SNORA75.1-201ENST00000391130 148 ntBASIC0.44□□□□□ -2.34
EBF3Q9H4W6 RNU6-337P-201ENST00000391243 106 ntBASIC0.44□□□□□ -2.34
EBF3Q9H4W6 RNA5SP192-201ENST00000364404 120 ntBASIC0.43□□□□□ -2.34
EBF3Q9H4W6 RNA5SP128-201ENST00000365305 116 ntBASIC0.43□□□□□ -2.34
EBF3Q9H4W6 RNU6-669P-201ENST00000365575 107 ntBASIC0.43□□□□□ -2.34
EBF3Q9H4W6 MIR630-201ENST00000384957 97 ntBASIC0.43□□□□□ -2.34
EBF3Q9H4W6 CYP3A54P-201ENST00000566950 75 ntBASIC0.43□□□□□ -2.34
EBF3Q9H4W6 U4.4-201ENST00000620626 117 ntBASIC0.43□□□□□ -2.34
EBF3Q9H4W6 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
EBF3Q9H4W6 SNORA50A-201ENST00000384225 134 ntBASIC0.42□□□□□ -2.34
EBF3Q9H4W6 U7.6-201ENST00000610841 64 ntBASIC0.42□□□□□ -2.34
EBF3Q9H4W6 U6.96-201ENST00000636425 70 ntBASIC0.42□□□□□ -2.34
EBF3Q9H4W6 SNORA25.5-201ENST00000363782 126 ntBASIC0.41□□□□□ -2.34
EBF3Q9H4W6 SNORD114-29-201ENST00000364819 70 ntBASIC0.41□□□□□ -2.34
EBF3Q9H4W6 RNU6-1246P-201ENST00000391064 107 ntBASIC0.41□□□□□ -2.34
EBF3Q9H4W6 SNORA62.5-201ENST00000516634 120 ntBASIC0.41□□□□□ -2.34
EBF3Q9H4W6 AC084368.1-201ENST00000620935 65 ntBASIC0.41□□□□□ -2.34
EBF3Q9H4W6 MIRLET7D-201ENST00000362263 87 ntBASIC0.4□□□□□ -2.35
EBF3Q9H4W6 RNU6-1036P-201ENST00000383959 104 ntBASIC0.4□□□□□ -2.35
EBF3Q9H4W6 MIR876-201ENST00000401147 81 ntBASIC0.4□□□□□ -2.35
EBF3Q9H4W6 MIR1197-201ENST00000408818 88 ntBASIC0.4□□□□□ -2.35
EBF3Q9H4W6 RNU7-129P-201ENST00000516128 62 ntBASIC0.4□□□□□ -2.35
EBF3Q9H4W6 MIR548AG1-201ENST00000579932 66 ntBASIC0.4□□□□□ -2.35
EBF3Q9H4W6 MIR6773-201ENST00000612812 74 ntBASIC0.4□□□□□ -2.35
EBF3Q9H4W6 RNU6-698P-201ENST00000363523 107 ntBASIC0.39□□□□□ -2.35
EBF3Q9H4W6 RNU6-34P-201ENST00000364874 107 ntBASIC0.39□□□□□ -2.35
EBF3Q9H4W6 MIR517B-201ENST00000385102 67 ntBASIC0.39□□□□□ -2.35
EBF3Q9H4W6 RNA5SP257-201ENST00000363023 116 ntBASIC0.38□□□□□ -2.35
EBF3Q9H4W6 Y_RNA.325-201ENST00000365171 122 ntBASIC0.38□□□□□ -2.35
EBF3Q9H4W6 RNU6-815P-201ENST00000384080 113 ntBASIC0.38□□□□□ -2.35
EBF3Q9H4W6 MIR633-201ENST00000384821 98 ntBASIC0.38□□□□□ -2.35
EBF3Q9H4W6 RNU6-127P-201ENST00000390897 107 ntBASIC0.38□□□□□ -2.35
EBF3Q9H4W6 MIR1255B2-201ENST00000408618 67 ntBASIC0.38□□□□□ -2.35
EBF3Q9H4W6 AC090625.1-201ENST00000357130 210 ntBASIC0.37□□□□□ -2.35
EBF3Q9H4W6 RNU6-502P-201ENST00000362419 108 ntBASIC0.37□□□□□ -2.35
EBF3Q9H4W6 MIR519A2-201ENST00000384990 87 ntBASIC0.37□□□□□ -2.35
EBF3Q9H4W6 SCARNA11.2-201ENST00000517183 154 ntBASIC0.37□□□□□ -2.35
EBF3Q9H4W6 MIR4514-201ENST00000581410 57 ntBASIC0.37□□□□□ -2.35
EBF3Q9H4W6 RNU6-92P-201ENST00000605893 104 ntBASIC0.37□□□□□ -2.35
EBF3Q9H4W6 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
EBF3Q9H4W6 SNORA9.1-201ENST00000362412 131 ntBASIC0.36□□□□□ -2.35
EBF3Q9H4W6 SNORD60.1-201ENST00000362451 73 ntBASIC0.36□□□□□ -2.35
EBF3Q9H4W6 MIR548H2-201ENST00000408874 88 ntBASIC0.36□□□□□ -2.35
EBF3Q9H4W6 Y_RNA.68-201ENST00000362881 102 ntBASIC0.35□□□□□ -2.35
EBF3Q9H4W6 Y_RNA.246-201ENST00000364495 108 ntBASIC0.35□□□□□ -2.35
EBF3Q9H4W6 RNU6-499P-201ENST00000365615 107 ntBASIC0.35□□□□□ -2.35
EBF3Q9H4W6 SNORA41B-201ENST00000384785 128 ntBASIC0.35□□□□□ -2.35
EBF3Q9H4W6 MIRLET7B-201ENST00000385140 83 ntBASIC0.35□□□□□ -2.35
EBF3Q9H4W6 SNORD113-2-201ENST00000391082 72 ntBASIC0.35□□□□□ -2.35
EBF3Q9H4W6 RNU6-518P-201ENST00000516056 96 ntBASIC0.35□□□□□ -2.35
EBF3Q9H4W6 MIR466-201ENST00000580653 84 ntBASIC0.35□□□□□ -2.35
EBF3Q9H4W6 RNU6-1079P-201ENST00000362861 110 ntBASIC0.34□□□□□ -2.36
EBF3Q9H4W6 RNU6-302P-201ENST00000365249 107 ntBASIC0.34□□□□□ -2.36
EBF3Q9H4W6 RNU6-122P-201ENST00000516818 107 ntBASIC0.34□□□□□ -2.36
EBF3Q9H4W6 SNORD115-25-201ENST00000362619 82 ntBASIC0.33□□□□□ -2.36
EBF3Q9H4W6 RNU6-446P-201ENST00000362827 106 ntBASIC0.33□□□□□ -2.36
EBF3Q9H4W6 RNA5SP62-201ENST00000363457 110 ntBASIC0.33□□□□□ -2.36
EBF3Q9H4W6 RNU6-1327P-201ENST00000365302 105 ntBASIC0.33□□□□□ -2.36
EBF3Q9H4W6 MIR106A-201ENST00000384870 81 ntBASIC0.33□□□□□ -2.36
EBF3Q9H4W6 MIR643-201ENST00000385267 97 ntBASIC0.33□□□□□ -2.36
EBF3Q9H4W6 AL021921.1-201ENST00000442774 93 ntBASIC0.33□□□□□ -2.36
EBF3Q9H4W6 AC079150.2-201ENST00000443733 78 ntBASIC0.33□□□□□ -2.36
EBF3Q9H4W6 RNU6-782P-201ENST00000516852 104 ntBASIC0.33□□□□□ -2.36
EBF3Q9H4W6 RNU6-940P-201ENST00000363433 104 ntBASIC0.32□□□□□ -2.36
EBF3Q9H4W6 RNU6-829P-201ENST00000363700 112 ntBASIC0.32□□□□□ -2.36
EBF3Q9H4W6 SNORD2-201ENST00000459163 69 ntBASIC0.32□□□□□ -2.36
EBF3Q9H4W6 AC069113.3-201ENST00000521019 150 ntBASIC0.32□□□□□ -2.36
EBF3Q9H4W6 AP000676.1-201ENST00000533307 52 ntBASIC0.31□□□□□ -2.36
EBF3Q9H4W6 MIR2909-201ENST00000617113 69 ntBASIC0.31□□□□□ -2.36
EBF3Q9H4W6 AC108740.1-201ENST00000498629 225 ntBASIC0.3□□□□□ -2.36
EBF3Q9H4W6 Y_RNA.74-201ENST00000362911 99 ntBASIC0.29□□□□□ -2.36
EBF3Q9H4W6 SNORD115-23-201ENST00000364461 82 ntBASIC0.29□□□□□ -2.36
EBF3Q9H4W6 Y_RNA.282-201ENST00000364793 102 ntBASIC0.29□□□□□ -2.36
EBF3Q9H4W6 RNA5SP63-201ENST00000391225 112 ntBASIC0.29□□□□□ -2.36
EBF3Q9H4W6 AC023932.2-201ENST00000603176 175 ntBASIC0.29□□□□□ -2.36
EBF3Q9H4W6 Y_RNA.178-201ENST00000363832 102 ntBASIC0.28□□□□□ -2.36
EBF3Q9H4W6 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.28□□□□□ -2.36
EBF3Q9H4W6 MIR3938-201ENST00000582157 103 ntBASIC0.28□□□□□ -2.36
EBF3Q9H4W6 MTND4LP19-201ENST00000403051 166 ntBASIC0.27□□□□□ -2.37
EBF3Q9H4W6 RNU7-154P-201ENST00000516194 62 ntBASIC0.27□□□□□ -2.37
EBF3Q9H4W6 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
EBF3Q9H4W6 Y_RNA.236-201ENST00000364427 111 ntBASIC0.26□□□□□ -2.37
EBF3Q9H4W6 SNORD113-4-201ENST00000364802 75 ntBASIC0.26□□□□□ -2.37
EBF3Q9H4W6 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.26□□□□□ -2.37
EBF3Q9H4W6 MIR6514-201ENST00000622549 70 ntBASIC0.26□□□□□ -2.37
EBF3Q9H4W6 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.25□□□□□ -2.37
EBF3Q9H4W6 RNA5SP98-201ENST00000363158 137 ntBASIC0.25□□□□□ -2.37
EBF3Q9H4W6 Y_RNA.433-201ENST00000384089 102 ntBASIC0.25□□□□□ -2.37
EBF3Q9H4W6 SNORD116-16-201ENST00000384533 92 ntBASIC0.25□□□□□ -2.37
EBF3Q9H4W6 RNA5SP470-201ENST00000516463 106 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 315.3 ms