Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 U6.81-201ENST00000612550 106 ntBASIC-1.83□□□□□ -2.7
CCDC43Q96MW1 SNORD115-33-201ENST00000363723 82 ntBASIC-1.84□□□□□ -2.7
CCDC43Q96MW1 RNY1P5-201ENST00000383890 115 ntBASIC-1.84□□□□□ -2.7
CCDC43Q96MW1 SNORD116-21-201ENST00000384507 92 ntBASIC-1.84□□□□□ -2.7
CCDC43Q96MW1 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.85□□□□□ -2.71
CCDC43Q96MW1 RNU6-226P-201ENST00000363778 107 ntBASIC-1.85□□□□□ -2.71
CCDC43Q96MW1 SNORD116-10-201ENST00000363791 102 ntBASIC-1.85□□□□□ -2.71
CCDC43Q96MW1 RNU6-746P-201ENST00000384112 109 ntBASIC-1.85□□□□□ -2.71
CCDC43Q96MW1 MIR29B1-201ENST00000385015 81 ntBASIC-1.85□□□□□ -2.71
CCDC43Q96MW1 RNU7-154P-201ENST00000516194 62 ntBASIC-1.85□□□□□ -2.71
CCDC43Q96MW1 RNU7-61P-201ENST00000515897 61 ntBASIC-1.86□□□□□ -2.71
CCDC43Q96MW1 SNORD63.1-201ENST00000516178 80 ntBASIC-1.86□□□□□ -2.71
CCDC43Q96MW1 MIR521-2-201ENST00000384818 87 ntBASIC-1.87□□□□□ -2.71
CCDC43Q96MW1 MIR1236-201ENST00000408340 102 ntBASIC-1.87□□□□□ -2.71
CCDC43Q96MW1 AC132825.6-201ENST00000638861 357 ntBASIC-1.87□□□□□ -2.71
CCDC43Q96MW1 RNY4P27-201ENST00000363341 96 ntBASIC-1.88□□□□□ -2.71
CCDC43Q96MW1 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.88□□□□□ -2.71
CCDC43Q96MW1 RNU6-479P-201ENST00000516348 105 ntBASIC-1.88□□□□□ -2.71
CCDC43Q96MW1 RNU7-153P-201ENST00000516455 62 ntBASIC-1.89□□□□□ -2.71
CCDC43Q96MW1 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.89□□□□□ -2.71
CCDC43Q96MW1 MIR519A2-201ENST00000384990 87 ntBASIC-1.9□□□□□ -2.71
CCDC43Q96MW1 MIR590-201ENST00000385008 97 ntBASIC-1.9□□□□□ -2.71
CCDC43Q96MW1 RNU6-162P-201ENST00000516228 103 ntBASIC-1.9□□□□□ -2.71
CCDC43Q96MW1 RNU6-537P-201ENST00000517277 103 ntBASIC-1.9□□□□□ -2.71
CCDC43Q96MW1 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.9□□□□□ -2.71
CCDC43Q96MW1 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.91□□□□□ -2.72
CCDC43Q96MW1 MIR6818-201ENST00000621576 65 ntBASIC-1.91□□□□□ -2.72
CCDC43Q96MW1 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.92□□□□□ -2.72
CCDC43Q96MW1 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.92□□□□□ -2.72
CCDC43Q96MW1 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.92□□□□□ -2.72
CCDC43Q96MW1 AL450471.1-201ENST00000447509 127 ntBASIC-1.92□□□□□ -2.72
CCDC43Q96MW1 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.92□□□□□ -2.72
CCDC43Q96MW1 AC090425.1-201ENST00000610007 140 ntBASIC-1.92□□□□□ -2.72
CCDC43Q96MW1 MIR6739-201ENST00000622461 75 ntBASIC-1.92□□□□□ -2.72
CCDC43Q96MW1 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.94□□□□□ -2.72
CCDC43Q96MW1 SNORD115-22-201ENST00000364456 82 ntBASIC-1.94□□□□□ -2.72
CCDC43Q96MW1 SNORD116-14-201ENST00000383894 92 ntBASIC-1.94□□□□□ -2.72
CCDC43Q96MW1 SNORD116-17-201ENST00000383929 92 ntBASIC-1.94□□□□□ -2.72
CCDC43Q96MW1 SNORD116-15-201ENST00000384445 92 ntBASIC-1.94□□□□□ -2.72
CCDC43Q96MW1 SNORD116-19-201ENST00000384729 92 ntBASIC-1.94□□□□□ -2.72
CCDC43Q96MW1 MIR1302-5-201ENST00000408164 150 ntBASIC-1.94□□□□□ -2.72
CCDC43Q96MW1 RNU6-518P-201ENST00000516056 96 ntBASIC-1.94□□□□□ -2.72
CCDC43Q96MW1 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.94□□□□□ -2.72
CCDC43Q96MW1 RNU7-134P-201ENST00000458997 64 ntBASIC-1.95□□□□□ -2.72
CCDC43Q96MW1 RNU6-752P-201ENST00000516376 102 ntBASIC-1.95□□□□□ -2.72
CCDC43Q96MW1 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.96□□□□□ -2.72
CCDC43Q96MW1 RNU6-109P-201ENST00000516364 107 ntBASIC-1.96□□□□□ -2.72
CCDC43Q96MW1 RNU6-184P-201ENST00000516514 107 ntBASIC-1.96□□□□□ -2.72
CCDC43Q96MW1 AC138207.3-201ENST00000585289 166 ntBASIC-1.96□□□□□ -2.72
CCDC43Q96MW1 U7.3-201ENST00000616123 62 ntBASIC-1.97□□□□□ -2.72
CCDC43Q96MW1 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.98□□□□□ -2.73
CCDC43Q96MW1 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.98□□□□□ -2.73
CCDC43Q96MW1 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.98□□□□□ -2.73
CCDC43Q96MW1 AL353691.2-201ENST00000443795 59 ntBASIC-1.98□□□□□ -2.73
CCDC43Q96MW1 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.98□□□□□ -2.73
CCDC43Q96MW1 MIR5591-201ENST00000578248 65 ntBASIC-1.98□□□□□ -2.73
CCDC43Q96MW1 RNU6-340P-201ENST00000364005 107 ntBASIC-1.99□□□□□ -2.73
CCDC43Q96MW1 RNU6-576P-201ENST00000390854 102 ntBASIC-1.99□□□□□ -2.73
CCDC43Q96MW1 RNU4-61P-201ENST00000411243 107 ntBASIC-1.99□□□□□ -2.73
CCDC43Q96MW1 AL021921.1-201ENST00000442774 93 ntBASIC-2□□□□□ -2.73
CCDC43Q96MW1 Y_RNA.684-201ENST00000516510 99 ntBASIC-2□□□□□ -2.73
CCDC43Q96MW1 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-2□□□□□ -2.73
CCDC43Q96MW1 MIR6129-201ENST00000616087 109 ntBASIC-2.01□□□□□ -2.73
CCDC43Q96MW1 RNA5SP26-201ENST00000362406 119 ntBASIC-2.02□□□□□ -2.73
CCDC43Q96MW1 Y_RNA.232-201ENST00000364369 96 ntBASIC-2.02□□□□□ -2.73
CCDC43Q96MW1 SNORD115-27-201ENST00000364430 82 ntBASIC-2.02□□□□□ -2.73
CCDC43Q96MW1 RNU6-681P-201ENST00000364012 104 ntBASIC-2.03□□□□□ -2.73
CCDC43Q96MW1 MIR527-201ENST00000385244 85 ntBASIC-2.03□□□□□ -2.73
CCDC43Q96MW1 RNU6-732P-201ENST00000516033 103 ntBASIC-2.03□□□□□ -2.73
CCDC43Q96MW1 RNU6-1238P-201ENST00000517215 102 ntBASIC-2.03□□□□□ -2.73
CCDC43Q96MW1 Y_RNA.93-201ENST00000363066 109 ntBASIC-2.04□□□□□ -2.74
CCDC43Q96MW1 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.04□□□□□ -2.74
CCDC43Q96MW1 RNU6-554P-201ENST00000410466 106 ntBASIC-2.04□□□□□ -2.74
CCDC43Q96MW1 RNU2-51P-201ENST00000410708 197 ntBASIC-2.04□□□□□ -2.74
CCDC43Q96MW1 Y_RNA.261-201ENST00000364631 102 ntBASIC-2.06□□□□□ -2.74
CCDC43Q96MW1 SNORD77.2-201ENST00000391045 68 ntBASIC-2.06□□□□□ -2.74
CCDC43Q96MW1 AL035461.1-201ENST00000421490 332 ntBASIC-2.06□□□□□ -2.74
CCDC43Q96MW1 RNU6-106P-201ENST00000384405 107 ntBASIC-2.07□□□□□ -2.74
CCDC43Q96MW1 MIR519C-201ENST00000385053 87 ntBASIC-2.07□□□□□ -2.74
CCDC43Q96MW1 MIR548AG1-201ENST00000579932 66 ntBASIC-2.07□□□□□ -2.74
CCDC43Q96MW1 Y_RNA.348-201ENST00000365403 103 ntBASIC-2.08□□□□□ -2.74
CCDC43Q96MW1 SNORA19-201ENST00000384737 128 ntBASIC-2.08□□□□□ -2.74
CCDC43Q96MW1 MIR507-201ENST00000385234 94 ntBASIC-2.08□□□□□ -2.74
CCDC43Q96MW1 RNU6-656P-201ENST00000516785 107 ntBASIC-2.08□□□□□ -2.74
CCDC43Q96MW1 Y_RNA.818-201ENST00000618813 71 ntBASIC-2.08□□□□□ -2.74
CCDC43Q96MW1 RNU6-246P-201ENST00000384702 107 ntBASIC-2.09□□□□□ -2.74
CCDC43Q96MW1 RNU7-88P-201ENST00000458752 63 ntBASIC-2.09□□□□□ -2.74
CCDC43Q96MW1 MIR8485-201ENST00000401372 91 ntBASIC-2.1□□□□□ -2.75
CCDC43Q96MW1 RNU6-1108P-201ENST00000516308 104 ntBASIC-2.1□□□□□ -2.75
CCDC43Q96MW1 MIR3133-201ENST00000583157 78 ntBASIC-2.1□□□□□ -2.75
CCDC43Q96MW1 RNU6-540P-201ENST00000384622 101 ntBASIC-2.11□□□□□ -2.75
CCDC43Q96MW1 SNORD19-201ENST00000391191 68 ntBASIC-2.11□□□□□ -2.75
CCDC43Q96MW1 U7.5-201ENST00000517224 61 ntBASIC-2.11□□□□□ -2.75
CCDC43Q96MW1 RNU6-794P-201ENST00000517261 64 ntBASIC-2.11□□□□□ -2.75
CCDC43Q96MW1 AP002795.1-201ENST00000534879 84 ntBASIC-2.11□□□□□ -2.75
CCDC43Q96MW1 U2.7-201ENST00000619197 100 ntBASIC-2.11□□□□□ -2.75
CCDC43Q96MW1 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-2.12□□□□□ -2.75
CCDC43Q96MW1 MIR5683-201ENST00000636514 76 ntBASIC-2.12□□□□□ -2.75
CCDC43Q96MW1 RNU6-774P-201ENST00000363238 107 ntBASIC-2.13□□□□□ -2.75
CCDC43Q96MW1 RNU6-164P-201ENST00000364604 103 ntBASIC-2.13□□□□□ -2.75
Retrieved 100 of 98,524 protein–RNA pairs in 6.7 ms