Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL035461.1-201ENST00000421490 332 ntBASIC-1.11□□□□□ -2.59
CCDC54Q8NEL0 RNU6-497P-201ENST00000365316 104 ntBASIC-1.12□□□□□ -2.59
CCDC54Q8NEL0 RNU6-22P-201ENST00000384355 107 ntBASIC-1.12□□□□□ -2.59
CCDC54Q8NEL0 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.12□□□□□ -2.59
CCDC54Q8NEL0 RNU6-752P-201ENST00000516376 102 ntBASIC-1.12□□□□□ -2.59
CCDC54Q8NEL0 RNU6-656P-201ENST00000516785 107 ntBASIC-1.12□□□□□ -2.59
CCDC54Q8NEL0 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.12□□□□□ -2.59
CCDC54Q8NEL0 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.12□□□□□ -2.59
CCDC54Q8NEL0 MIR450A1-201ENST00000362262 91 ntBASIC-1.13□□□□□ -2.59
CCDC54Q8NEL0 RNU6-633P-201ENST00000362612 103 ntBASIC-1.13□□□□□ -2.59
CCDC54Q8NEL0 RNU6-30P-201ENST00000384561 107 ntBASIC-1.13□□□□□ -2.59
CCDC54Q8NEL0 SNORD83B-201ENST00000386745 93 ntBASIC-1.13□□□□□ -2.59
CCDC54Q8NEL0 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.13□□□□□ -2.59
CCDC54Q8NEL0 SCARNA17-201ENST00000516183 144 ntBASIC-1.13□□□□□ -2.59
CCDC54Q8NEL0 RNU7-154P-201ENST00000516194 62 ntBASIC-1.13□□□□□ -2.59
CCDC54Q8NEL0 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.13□□□□□ -2.59
CCDC54Q8NEL0 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.13□□□□□ -2.59
CCDC54Q8NEL0 SNORD77.2-201ENST00000391045 68 ntBASIC-1.14□□□□□ -2.59
CCDC54Q8NEL0 SCARNA18B-201ENST00000458806 135 ntBASIC-1.14□□□□□ -2.59
CCDC54Q8NEL0 MIR4668-201ENST00000582284 70 ntBASIC-1.14□□□□□ -2.59
CCDC54Q8NEL0 MIR4499-201ENST00000584834 69 ntBASIC-1.14□□□□□ -2.59
CCDC54Q8NEL0 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.14□□□□□ -2.59
CCDC54Q8NEL0 RNU6-834P-201ENST00000362367 110 ntBASIC-1.15□□□□□ -2.59
CCDC54Q8NEL0 RNU6-624P-201ENST00000363411 107 ntBASIC-1.15□□□□□ -2.59
CCDC54Q8NEL0 RNU6-1056P-201ENST00000383996 107 ntBASIC-1.15□□□□□ -2.59
CCDC54Q8NEL0 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.15□□□□□ -2.59
CCDC54Q8NEL0 RNU6-518P-201ENST00000516056 96 ntBASIC-1.15□□□□□ -2.59
CCDC54Q8NEL0 SNORD115-22-201ENST00000364456 82 ntBASIC-1.16□□□□□ -2.6
CCDC54Q8NEL0 RNU6-219P-201ENST00000364728 107 ntBASIC-1.16□□□□□ -2.6
CCDC54Q8NEL0 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.16□□□□□ -2.6
CCDC54Q8NEL0 RNY4P18-201ENST00000391107 89 ntBASIC-1.16□□□□□ -2.6
CCDC54Q8NEL0 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.16□□□□□ -2.6
CCDC54Q8NEL0 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.16□□□□□ -2.6
CCDC54Q8NEL0 RNU6-267P-201ENST00000516714 103 ntBASIC-1.16□□□□□ -2.6
CCDC54Q8NEL0 SNORD63.1-201ENST00000516178 80 ntBASIC-1.17□□□□□ -2.6
CCDC54Q8NEL0 RNA5SP67-201ENST00000516422 131 ntBASIC-1.17□□□□□ -2.6
CCDC54Q8NEL0 U2.7-201ENST00000619197 100 ntBASIC-1.17□□□□□ -2.6
CCDC54Q8NEL0 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.17□□□□□ -2.6
CCDC54Q8NEL0 RNU6-330P-201ENST00000363015 107 ntBASIC-1.18□□□□□ -2.6
CCDC54Q8NEL0 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.18□□□□□ -2.6
CCDC54Q8NEL0 AC140658.3-201ENST00000567603 271 ntBASIC-1.18□□□□□ -2.6
CCDC54Q8NEL0 AP001318.4-201ENST00000616637 121 ntBASIC-1.18□□□□□ -2.6
CCDC54Q8NEL0 uc_338.19-201ENST00000616808 99 ntBASIC-1.18□□□□□ -2.6
CCDC54Q8NEL0 RNU6-924P-201ENST00000362926 108 ntBASIC-1.2□□□□□ -2.6
CCDC54Q8NEL0 RNU6-246P-201ENST00000384702 107 ntBASIC-1.2□□□□□ -2.6
CCDC54Q8NEL0 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.2□□□□□ -2.6
CCDC54Q8NEL0 SNORA26.4-201ENST00000391188 123 ntBASIC-1.2□□□□□ -2.6
CCDC54Q8NEL0 RNU6-479P-201ENST00000516348 105 ntBASIC-1.2□□□□□ -2.6
CCDC54Q8NEL0 RNA5SP476-201ENST00000516613 103 ntBASIC-1.2□□□□□ -2.6
CCDC54Q8NEL0 MIR488-201ENST00000365739 83 ntBASIC-1.21□□□□□ -2.6
CCDC54Q8NEL0 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.21□□□□□ -2.6
CCDC54Q8NEL0 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.21□□□□□ -2.6
CCDC54Q8NEL0 RNU6-402P-201ENST00000410678 103 ntBASIC-1.21□□□□□ -2.6
CCDC54Q8NEL0 MALAT1.1-201ENST00000618249 95 ntBASIC-1.21□□□□□ -2.6
CCDC54Q8NEL0 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.22□□□□□ -2.6
CCDC54Q8NEL0 MIR548M-201ENST00000408260 86 ntBASIC-1.22□□□□□ -2.6
CCDC54Q8NEL0 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.22□□□□□ -2.6
CCDC54Q8NEL0 AL031737.1-201ENST00000450125 223 ntBASIC-1.22□□□□□ -2.6
CCDC54Q8NEL0 RNU7-134P-201ENST00000458997 64 ntBASIC-1.22□□□□□ -2.6
CCDC54Q8NEL0 AP002795.1-201ENST00000534879 84 ntBASIC-1.22□□□□□ -2.6
CCDC54Q8NEL0 MIR3910-1-201ENST00000580936 111 ntBASIC-1.22□□□□□ -2.6
CCDC54Q8NEL0 RNU6-478P-201ENST00000363904 110 ntBASIC-1.23□□□□□ -2.61
CCDC54Q8NEL0 RNU6-681P-201ENST00000364012 104 ntBASIC-1.23□□□□□ -2.61
CCDC54Q8NEL0 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.23□□□□□ -2.61
CCDC54Q8NEL0 AL021921.1-201ENST00000442774 93 ntBASIC-1.23□□□□□ -2.61
CCDC54Q8NEL0 AC093729.1-201ENST00000513074 128 ntBASIC-1.23□□□□□ -2.61
CCDC54Q8NEL0 SNORD115-33-201ENST00000363723 82 ntBASIC-1.24□□□□□ -2.61
CCDC54Q8NEL0 RNU6-645P-201ENST00000364649 106 ntBASIC-1.24□□□□□ -2.61
CCDC54Q8NEL0 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.24□□□□□ -2.61
CCDC54Q8NEL0 MIR6738-201ENST00000619620 64 ntBASIC-1.24□□□□□ -2.61
CCDC54Q8NEL0 MIR548BB-201ENST00000626714 66 ntBASIC-1.24□□□□□ -2.61
CCDC54Q8NEL0 RNU6-640P-201ENST00000363693 105 ntBASIC-1.25□□□□□ -2.61
CCDC54Q8NEL0 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.25□□□□□ -2.61
CCDC54Q8NEL0 SNORD113-1-201ENST00000365321 69 ntBASIC-1.25□□□□□ -2.61
CCDC54Q8NEL0 MIR2052-201ENST00000636055 55 ntBASIC-1.25□□□□□ -2.61
CCDC54Q8NEL0 SNORD19-201ENST00000391191 68 ntBASIC-1.26□□□□□ -2.61
CCDC54Q8NEL0 RNU6-313P-201ENST00000516317 112 ntBASIC-1.26□□□□□ -2.61
CCDC54Q8NEL0 RNU6-557P-201ENST00000516842 110 ntBASIC-1.26□□□□□ -2.61
CCDC54Q8NEL0 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 SNORD115-37-201ENST00000363768 82 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 RNU6-755P-201ENST00000364400 103 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 SNORD116-22-201ENST00000384430 92 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 RNU2-51P-201ENST00000410708 197 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 AC074348.1-201ENST00000426503 132 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 HAR1A.1-201ENST00000459583 118 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 snoU83B.1-201ENST00000517136 88 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 U7.5-201ENST00000517224 61 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 RNY1P9-201ENST00000532431 109 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 MIR4324-201ENST00000584846 72 ntBASIC-1.27□□□□□ -2.61
CCDC54Q8NEL0 RNA5SP26-201ENST00000362406 119 ntBASIC-1.28□□□□□ -2.61
CCDC54Q8NEL0 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.28□□□□□ -2.61
CCDC54Q8NEL0 MIR587-201ENST00000384845 96 ntBASIC-1.28□□□□□ -2.61
CCDC54Q8NEL0 RNU7-88P-201ENST00000458752 63 ntBASIC-1.28□□□□□ -2.61
CCDC54Q8NEL0 RNU6-982P-201ENST00000516216 102 ntBASIC-1.28□□□□□ -2.61
CCDC54Q8NEL0 RNU6-10P-201ENST00000384036 107 ntBASIC-1.29□□□□□ -2.62
CCDC54Q8NEL0 SNORD57-201ENST00000448188 72 ntBASIC-1.29□□□□□ -2.62
CCDC54Q8NEL0 RNU6-732P-201ENST00000516033 103 ntBASIC-1.29□□□□□ -2.62
CCDC54Q8NEL0 SNORA40.13-201ENST00000516379 120 ntBASIC-1.29□□□□□ -2.62
CCDC54Q8NEL0 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 180.9 ms