Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 RNA5SP136-201ENST00000410906 107 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 MIR3613-201ENST00000579844 87 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 MIR4796-201ENST00000580742 81 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 AC025166.1-201ENST00000612411 163 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 U2.14-201ENST00000615943 113 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 RNU6-770P-201ENST00000363929 105 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 RNU6-806P-201ENST00000365147 105 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 SNORD90-201ENST00000391145 111 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 RNU6-644P-201ENST00000391155 98 ntBASIC-2.29□□□□□ -2.78
USF3Q68DE3 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-2.29□□□□□ -2.78
USF3Q68DE3 RNU5E-3P-201ENST00000515913 68 ntBASIC-2.3□□□□□ -2.78
USF3Q68DE3 MIR3144-201ENST00000579460 79 ntBASIC-2.3□□□□□ -2.78
USF3Q68DE3 AL160413.1-201ENST00000622780 310 ntBASIC-2.3□□□□□ -2.78
USF3Q68DE3 Y_RNA.26-201ENST00000362539 101 ntBASIC-2.3□□□□□ -2.78
USF3Q68DE3 MTND1P19-201ENST00000511780 315 ntBASIC-2.3□□□□□ -2.78
USF3Q68DE3 RNY3P2-201ENST00000362918 102 ntBASIC-2.31□□□□□ -2.78
USF3Q68DE3 Y_RNA.233-201ENST00000364407 101 ntBASIC-2.31□□□□□ -2.78
USF3Q68DE3 RNU6-277P-201ENST00000516272 106 ntBASIC-2.31□□□□□ -2.78
USF3Q68DE3 AC130289.1-201ENST00000577321 73 ntBASIC-2.31□□□□□ -2.78
USF3Q68DE3 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.31□□□□□ -2.78
USF3Q68DE3 AC090971.5-201ENST00000621102 293 ntBASIC-2.31□□□□□ -2.78
USF3Q68DE3 RNU6-361P-201ENST00000364454 107 ntBASIC-2.32□□□□□ -2.78
USF3Q68DE3 MIR125B1-201ENST00000385236 88 ntBASIC-2.32□□□□□ -2.78
USF3Q68DE3 RNU6-823P-201ENST00000391042 103 ntBASIC-2.32□□□□□ -2.78
USF3Q68DE3 Y_RNA.19-201ENST00000362462 99 ntBASIC-2.32□□□□□ -2.78
USF3Q68DE3 Y_RNA.158-201ENST00000363651 101 ntBASIC-2.32□□□□□ -2.78
USF3Q68DE3 RNU6-974P-201ENST00000384099 108 ntBASIC-2.33□□□□□ -2.78
USF3Q68DE3 RNU6-530P-201ENST00000391180 107 ntBASIC-2.33□□□□□ -2.78
USF3Q68DE3 RNU6-554P-201ENST00000410466 106 ntBASIC-2.33□□□□□ -2.78
USF3Q68DE3 RNU6-450P-201ENST00000364654 107 ntBASIC-2.33□□□□□ -2.78
USF3Q68DE3 MIR1252-201ENST00000408861 65 ntBASIC-2.33□□□□□ -2.78
USF3Q68DE3 RNU6-1143P-201ENST00000516125 104 ntBASIC-2.33□□□□□ -2.78
USF3Q68DE3 SNORD116-16-201ENST00000384533 92 ntBASIC-2.34□□□□□ -2.78
USF3Q68DE3 MIR630-201ENST00000384957 97 ntBASIC-2.34□□□□□ -2.78
USF3Q68DE3 Y_RNA.237-201ENST00000364439 102 ntBASIC-2.34□□□□□ -2.78
USF3Q68DE3 RNU6-828P-201ENST00000364876 107 ntBASIC-2.34□□□□□ -2.78
USF3Q68DE3 MIR548C-201ENST00000384815 97 ntBASIC-2.34□□□□□ -2.78
USF3Q68DE3 RNU6-598P-201ENST00000364017 105 ntBASIC-2.35□□□□□ -2.79
USF3Q68DE3 Y_RNA.279-201ENST00000364763 95 ntBASIC-2.35□□□□□ -2.79
USF3Q68DE3 Y_RNA.387-201ENST00000383918 102 ntBASIC-2.35□□□□□ -2.79
USF3Q68DE3 AC103810.7-201ENST00000607821 91 ntBASIC-2.35□□□□□ -2.79
USF3Q68DE3 Y_RNA.47-201ENST00000362697 108 ntBASIC-2.36□□□□□ -2.79
USF3Q68DE3 RNU6-587P-201ENST00000391282 106 ntBASIC-2.36□□□□□ -2.79
USF3Q68DE3 MIR1302-6-201ENST00000408466 90 ntBASIC-2.36□□□□□ -2.79
USF3Q68DE3 MIR202-201ENST00000362219 110 ntBASIC-2.36□□□□□ -2.79
USF3Q68DE3 Y_RNA.210-201ENST00000364161 110 ntBASIC-2.36□□□□□ -2.79
USF3Q68DE3 RNU6-275P-201ENST00000364910 107 ntBASIC-2.36□□□□□ -2.79
USF3Q68DE3 MIR4643-201ENST00000577473 78 ntBASIC-2.36□□□□□ -2.79
USF3Q68DE3 Y_RNA.29-201ENST00000362570 113 ntBASIC-2.37□□□□□ -2.79
USF3Q68DE3 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.37□□□□□ -2.79
USF3Q68DE3 Y_RNA.309-201ENST00000365046 111 ntBASIC-2.37□□□□□ -2.79
USF3Q68DE3 AC069439.1-201ENST00000494739 167 ntBASIC-2.37□□□□□ -2.79
USF3Q68DE3 MIR4694-201ENST00000578534 80 ntBASIC-2.37□□□□□ -2.79
USF3Q68DE3 RNU2-16P-201ENST00000410712 136 ntBASIC-2.37□□□□□ -2.79
USF3Q68DE3 AC002553.4-201ENST00000616896 331 ntBASIC-2.37□□□□□ -2.79
USF3Q68DE3 Y_RNA.95-201ENST00000363079 95 ntBASIC-2.38□□□□□ -2.79
USF3Q68DE3 Y_RNA.668-201ENST00000516233 93 ntBASIC-2.38□□□□□ -2.79
USF3Q68DE3 RNY3P16-201ENST00000516338 101 ntBASIC-2.38□□□□□ -2.79
USF3Q68DE3 DNAJC19P2-201ENST00000593340 302 ntBASIC-2.38□□□□□ -2.79
USF3Q68DE3 RNU6-668P-201ENST00000364180 107 ntBASIC-2.38□□□□□ -2.79
USF3Q68DE3 SNORD113-2-201ENST00000391082 72 ntBASIC-2.38□□□□□ -2.79
USF3Q68DE3 MIR7978-201ENST00000636158 59 ntBASIC-2.38□□□□□ -2.79
USF3Q68DE3 SNORD116-10-201ENST00000363791 102 ntBASIC-2.39□□□□□ -2.79
USF3Q68DE3 SNORD58A-201ENST00000383875 65 ntBASIC-2.39□□□□□ -2.79
USF3Q68DE3 MTND2P23-201ENST00000422990 651 ntBASIC-2.39□□□□□ -2.79
USF3Q68DE3 MIR548V-201ENST00000584165 80 ntBASIC-2.39□□□□□ -2.79
USF3Q68DE3 Y_RNA.276-201ENST00000364732 109 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 RNU6-813P-201ENST00000384691 107 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 RNU6-972P-201ENST00000391208 107 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 MIR1263-201ENST00000408324 86 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 MIR3688-2-201ENST00000636963 87 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 SNORD77.2-201ENST00000391045 68 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 AC113195.1-201ENST00000579952 141 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 MIR3675-201ENST00000583661 73 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-2.4□□□□□ -2.79
USF3Q68DE3 Y_RNA.264-201ENST00000364665 102 ntBASIC-2.41□□□□□ -2.79
USF3Q68DE3 MIR579-201ENST00000385221 98 ntBASIC-2.41□□□□□ -2.79
USF3Q68DE3 MIR4777-201ENST00000583710 86 ntBASIC-2.41□□□□□ -2.79
USF3Q68DE3 U4.5-201ENST00000617137 123 ntBASIC-2.41□□□□□ -2.79
USF3Q68DE3 MIR3974-201ENST00000637126 96 ntBASIC-2.41□□□□□ -2.79
USF3Q68DE3 Y_RNA.563-201ENST00000384707 108 ntBASIC-2.41□□□□□ -2.8
USF3Q68DE3 RNU6-129P-201ENST00000391022 107 ntBASIC-2.41□□□□□ -2.8
USF3Q68DE3 RNU6-982P-201ENST00000516216 102 ntBASIC-2.41□□□□□ -2.8
USF3Q68DE3 Y_RNA.277-201ENST00000364754 102 ntBASIC-2.42□□□□□ -2.8
USF3Q68DE3 SNORA41B-201ENST00000384785 128 ntBASIC-2.42□□□□□ -2.8
USF3Q68DE3 AC078883.4-201ENST00000623218 367 ntBASIC-2.42□□□□□ -2.8
USF3Q68DE3 Y_RNA.337-201ENST00000365312 102 ntBASIC-2.42□□□□□ -2.8
USF3Q68DE3 RNU6-1318P-201ENST00000365389 103 ntBASIC-2.42□□□□□ -2.8
USF3Q68DE3 MIR1277-201ENST00000408536 78 ntBASIC-2.42□□□□□ -2.8
USF3Q68DE3 Y_RNA.604-201ENST00000410574 102 ntBASIC-2.42□□□□□ -2.8
USF3Q68DE3 MIR3658-201ENST00000636291 56 ntBASIC-2.42□□□□□ -2.8
USF3Q68DE3 Y_RNA.197-201ENST00000364004 102 ntBASIC-2.43□□□□□ -2.8
USF3Q68DE3 MIR4426-201ENST00000640330 63 ntBASIC-2.43□□□□□ -2.8
USF3Q68DE3 Y_RNA.281-201ENST00000364774 94 ntBASIC-2.44□□□□□ -2.8
USF3Q68DE3 RNU6-1227P-201ENST00000383981 107 ntBASIC-2.44□□□□□ -2.8
USF3Q68DE3 SNORA17.4-201ENST00000391287 132 ntBASIC-2.44□□□□□ -2.8
Retrieved 100 of 98,524 protein–RNA pairs in 2068.5 ms