Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU6-168P-201ENST00000516189 101 ntBASIC-0.42□□□□□ -2.48
PDLIM3Q53GG5 MIR6738-201ENST00000619620 64 ntBASIC-0.42□□□□□ -2.48
PDLIM3Q53GG5 RNU6-260P-201ENST00000384092 107 ntBASIC-0.43□□□□□ -2.48
PDLIM3Q53GG5 RNU6-900P-201ENST00000384498 102 ntBASIC-0.43□□□□□ -2.48
PDLIM3Q53GG5 RNA5SP89-201ENST00000410300 108 ntBASIC-0.43□□□□□ -2.48
PDLIM3Q53GG5 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.43□□□□□ -2.48
PDLIM3Q53GG5 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.43□□□□□ -2.48
PDLIM3Q53GG5 RNA5SP66-201ENST00000517178 101 ntBASIC-0.43□□□□□ -2.48
PDLIM3Q53GG5 U6.96-201ENST00000636425 70 ntBASIC-0.43□□□□□ -2.48
PDLIM3Q53GG5 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.44□□□□□ -2.48
PDLIM3Q53GG5 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.44□□□□□ -2.48
PDLIM3Q53GG5 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.44□□□□□ -2.48
PDLIM3Q53GG5 RNU6-502P-201ENST00000362419 108 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 RNY4P27-201ENST00000363341 96 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 SNORD56B-201ENST00000384713 71 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 RNU6-284P-201ENST00000411105 106 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 AC114755.3-201ENST00000481111 251 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 AC093729.1-201ENST00000513074 128 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 U6.81-201ENST00000612550 106 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 snoR1.1-201ENST00000628177 80 ntBASIC-0.45□□□□□ -2.48
PDLIM3Q53GG5 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.46□□□□□ -2.48
PDLIM3Q53GG5 RNU6-219P-201ENST00000364728 107 ntBASIC-0.46□□□□□ -2.48
PDLIM3Q53GG5 SNORD77.2-201ENST00000391045 68 ntBASIC-0.46□□□□□ -2.48
PDLIM3Q53GG5 RNY4P30-201ENST00000410216 95 ntBASIC-0.46□□□□□ -2.48
PDLIM3Q53GG5 MIR4432-201ENST00000581823 84 ntBASIC-0.46□□□□□ -2.48
PDLIM3Q53GG5 MIR6773-201ENST00000612812 74 ntBASIC-0.46□□□□□ -2.48
PDLIM3Q53GG5 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.47□□□□□ -2.48
PDLIM3Q53GG5 RNA5SP461-201ENST00000516451 104 ntBASIC-0.47□□□□□ -2.48
PDLIM3Q53GG5 SNORA40.17-201ENST00000517256 115 ntBASIC-0.47□□□□□ -2.48
PDLIM3Q53GG5 MIR4441-201ENST00000582623 100 ntBASIC-0.47□□□□□ -2.48
PDLIM3Q53GG5 MIR3657-201ENST00000584818 117 ntBASIC-0.47□□□□□ -2.48
PDLIM3Q53GG5 MIR4324-201ENST00000584846 72 ntBASIC-0.47□□□□□ -2.48
PDLIM3Q53GG5 MIR548BB-201ENST00000626714 66 ntBASIC-0.47□□□□□ -2.48
PDLIM3Q53GG5 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.48□□□□□ -2.49
PDLIM3Q53GG5 MIR5704-201ENST00000584029 77 ntBASIC-0.48□□□□□ -2.49
PDLIM3Q53GG5 AL391099.1-201ENST00000624635 187 ntBASIC-0.48□□□□□ -2.49
PDLIM3Q53GG5 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.48□□□□□ -2.49
PDLIM3Q53GG5 MIR204-201ENST00000385200 110 ntBASIC-0.49□□□□□ -2.49
PDLIM3Q53GG5 SNORD38.3-201ENST00000516599 73 ntBASIC-0.49□□□□□ -2.49
PDLIM3Q53GG5 RNA5SP169-201ENST00000517268 117 ntBASIC-0.49□□□□□ -2.49
PDLIM3Q53GG5 AC093726.3-201ENST00000637588 150 ntBASIC-0.49□□□□□ -2.49
PDLIM3Q53GG5 RNU6-340P-201ENST00000364005 107 ntBASIC-0.5□□□□□ -2.49
PDLIM3Q53GG5 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.5□□□□□ -2.49
PDLIM3Q53GG5 RNU6-49P-201ENST00000384256 107 ntBASIC-0.5□□□□□ -2.49
PDLIM3Q53GG5 RNU6-337P-201ENST00000391243 106 ntBASIC-0.5□□□□□ -2.49
PDLIM3Q53GG5 MIR1285-2-201ENST00000408311 88 ntBASIC-0.5□□□□□ -2.49
PDLIM3Q53GG5 RNU7-55P-201ENST00000459426 62 ntBASIC-0.5□□□□□ -2.49
PDLIM3Q53GG5 RNU6-844P-201ENST00000517175 102 ntBASIC-0.5□□□□□ -2.49
PDLIM3Q53GG5 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.51□□□□□ -2.49
PDLIM3Q53GG5 MIR4436A-201ENST00000585278 85 ntBASIC-0.51□□□□□ -2.49
PDLIM3Q53GG5 AC090617.8-201ENST00000623339 167 ntBASIC-0.51□□□□□ -2.49
PDLIM3Q53GG5 SNORA2.1-201ENST00000363089 137 ntBASIC-0.52□□□□□ -2.49
PDLIM3Q53GG5 RNU6-681P-201ENST00000364012 104 ntBASIC-0.52□□□□□ -2.49
PDLIM3Q53GG5 RNU6-153P-201ENST00000364422 104 ntBASIC-0.52□□□□□ -2.49
PDLIM3Q53GG5 SNORA33.1-201ENST00000364957 130 ntBASIC-0.52□□□□□ -2.49
PDLIM3Q53GG5 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.52□□□□□ -2.49
PDLIM3Q53GG5 RNU6-592P-201ENST00000411333 103 ntBASIC-0.52□□□□□ -2.49
PDLIM3Q53GG5 RNU6-973P-201ENST00000364690 107 ntBASIC-0.53□□□□□ -2.49
PDLIM3Q53GG5 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.53□□□□□ -2.49
PDLIM3Q53GG5 MIRLET7B-201ENST00000385140 83 ntBASIC-0.53□□□□□ -2.49
PDLIM3Q53GG5 MIR4280-201ENST00000582178 76 ntBASIC-0.53□□□□□ -2.49
PDLIM3Q53GG5 IGLL4P-201ENST00000614590 133 ntBASIC-0.53□□□□□ -2.49
PDLIM3Q53GG5 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.54□□□□□ -2.5
PDLIM3Q53GG5 SNORA3B-201ENST00000391305 131 ntBASIC-0.54□□□□□ -2.5
PDLIM3Q53GG5 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.54□□□□□ -2.5
PDLIM3Q53GG5 AC140658.3-201ENST00000567603 271 ntBASIC-0.54□□□□□ -2.5
PDLIM3Q53GG5 YWHAEP3-201ENST00000582767 121 ntBASIC-0.54□□□□□ -2.5
PDLIM3Q53GG5 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.55□□□□□ -2.5
PDLIM3Q53GG5 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.55□□□□□ -2.5
PDLIM3Q53GG5 MIR8068-201ENST00000618032 68 ntBASIC-0.55□□□□□ -2.5
PDLIM3Q53GG5 RNY1P1-201ENST00000364372 112 ntBASIC-0.56□□□□□ -2.5
PDLIM3Q53GG5 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.56□□□□□ -2.5
PDLIM3Q53GG5 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.56□□□□□ -2.5
PDLIM3Q53GG5 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.56□□□□□ -2.5
PDLIM3Q53GG5 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.56□□□□□ -2.5
PDLIM3Q53GG5 RNA5SP180-201ENST00000516181 101 ntBASIC-0.57□□□□□ -2.5
PDLIM3Q53GG5 SCARNA17-201ENST00000516183 144 ntBASIC-0.57□□□□□ -2.5
PDLIM3Q53GG5 MIR6854-201ENST00000614935 69 ntBASIC-0.57□□□□□ -2.5
PDLIM3Q53GG5 SNORD114-14-201ENST00000362723 75 ntBASIC-0.58□□□□□ -2.5
PDLIM3Q53GG5 RNU6-624P-201ENST00000363411 107 ntBASIC-0.58□□□□□ -2.5
PDLIM3Q53GG5 MIR6851-201ENST00000617060 67 ntBASIC-0.58□□□□□ -2.5
PDLIM3Q53GG5 RNY4P7-201ENST00000364600 96 ntBASIC-0.59□□□□□ -2.5
PDLIM3Q53GG5 MIR1255B2-201ENST00000408618 67 ntBASIC-0.59□□□□□ -2.5
PDLIM3Q53GG5 RNU6-752P-201ENST00000516376 102 ntBASIC-0.59□□□□□ -2.5
PDLIM3Q53GG5 AC006160.2-201ENST00000637708 154 ntBASIC-0.59□□□□□ -2.5
PDLIM3Q53GG5 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.6□□□□□ -2.51
PDLIM3Q53GG5 RNU6-675P-201ENST00000384236 104 ntBASIC-0.6□□□□□ -2.51
PDLIM3Q53GG5 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.6□□□□□ -2.51
PDLIM3Q53GG5 CYP3A54P-201ENST00000566950 75 ntBASIC-0.6□□□□□ -2.51
PDLIM3Q53GG5 MIR4484-201ENST00000582855 83 ntBASIC-0.6□□□□□ -2.51
PDLIM3Q53GG5 RNU6-330P-201ENST00000363015 107 ntBASIC-0.61□□□□□ -2.51
PDLIM3Q53GG5 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.61□□□□□ -2.51
PDLIM3Q53GG5 RNU6-497P-201ENST00000365316 104 ntBASIC-0.61□□□□□ -2.51
PDLIM3Q53GG5 RNU6-129P-201ENST00000391022 107 ntBASIC-0.61□□□□□ -2.51
PDLIM3Q53GG5 RNU6-478P-201ENST00000363904 110 ntBASIC-0.62□□□□□ -2.51
PDLIM3Q53GG5 RNA5SP192-201ENST00000364404 120 ntBASIC-0.62□□□□□ -2.51
PDLIM3Q53GG5 RNU6-686P-201ENST00000364839 107 ntBASIC-0.62□□□□□ -2.51
PDLIM3Q53GG5 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.62□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 181.7 ms