Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.28□□□□□ -2.45
COL28A1Q2UY09 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.28□□□□□ -2.45
COL28A1Q2UY09 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.28□□□□□ -2.45
COL28A1Q2UY09 RNU6-752P-201ENST00000516376 102 ntBASIC-0.28□□□□□ -2.45
COL28A1Q2UY09 YWHAEP3-201ENST00000582767 121 ntBASIC-0.28□□□□□ -2.45
COL28A1Q2UY09 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.28□□□□□ -2.45
COL28A1Q2UY09 MIR548AZ-201ENST00000616567 95 ntBASIC-0.28□□□□□ -2.45
COL28A1Q2UY09 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 SNORD14C-201ENST00000365382 88 ntBASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 SNORD56B-201ENST00000384713 71 ntBASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 SNORD75.1-201ENST00000408373 60 ntBASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 RNU6-284P-201ENST00000411105 106 ntBASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 RNU6-557P-201ENST00000516842 110 ntBASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 MIR4432-201ENST00000581823 84 ntBASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 MIR198-201ENST00000637333 62 ntBASIC-0.29□□□□□ -2.46
COL28A1Q2UY09 RNU6-681P-201ENST00000364012 104 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 RNU6-973P-201ENST00000364690 107 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 MIRLET7B-201ENST00000385140 83 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 MIR601-201ENST00000385256 79 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 RNY4P30-201ENST00000410216 95 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 AC114755.3-201ENST00000481111 251 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 RNA5SP147-201ENST00000516493 109 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 RNA5SP66-201ENST00000517178 101 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 MIR3681-201ENST00000580089 72 ntBASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.3□□□□□ -2.46
COL28A1Q2UY09 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.31□□□□□ -2.46
COL28A1Q2UY09 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.31□□□□□ -2.46
COL28A1Q2UY09 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.31□□□□□ -2.46
COL28A1Q2UY09 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.31□□□□□ -2.46
COL28A1Q2UY09 MIR4436A-201ENST00000585278 85 ntBASIC-0.31□□□□□ -2.46
COL28A1Q2UY09 AC006160.2-201ENST00000637708 154 ntBASIC-0.31□□□□□ -2.46
COL28A1Q2UY09 RNU6-901P-201ENST00000384593 106 ntBASIC-0.32□□□□□ -2.46
COL28A1Q2UY09 SNORA32.3-201ENST00000384772 121 ntBASIC-0.32□□□□□ -2.46
COL28A1Q2UY09 RNA5SP169-201ENST00000517268 117 ntBASIC-0.32□□□□□ -2.46
COL28A1Q2UY09 MIR4280-201ENST00000582178 76 ntBASIC-0.32□□□□□ -2.46
COL28A1Q2UY09 uc_338.36-201ENST00000622331 158 ntBASIC-0.32□□□□□ -2.46
COL28A1Q2UY09 AL391099.1-201ENST00000624635 187 ntBASIC-0.32□□□□□ -2.46
COL28A1Q2UY09 U6.96-201ENST00000636425 70 ntBASIC-0.32□□□□□ -2.46
COL28A1Q2UY09 RNU6-478P-201ENST00000363904 110 ntBASIC-0.33□□□□□ -2.46
COL28A1Q2UY09 SNORD115-23-201ENST00000364461 82 ntBASIC-0.33□□□□□ -2.46
COL28A1Q2UY09 AC090617.8-201ENST00000623339 167 ntBASIC-0.33□□□□□ -2.46
COL28A1Q2UY09 AC093726.3-201ENST00000637588 150 ntBASIC-0.33□□□□□ -2.46
COL28A1Q2UY09 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.34□□□□□ -2.46
COL28A1Q2UY09 RNY1P1-201ENST00000364372 112 ntBASIC-0.34□□□□□ -2.46
COL28A1Q2UY09 RNU6-686P-201ENST00000364839 107 ntBASIC-0.34□□□□□ -2.46
COL28A1Q2UY09 SNORA33.1-201ENST00000364957 130 ntBASIC-0.34□□□□□ -2.46
COL28A1Q2UY09 RNU6-129P-201ENST00000391022 107 ntBASIC-0.34□□□□□ -2.46
COL28A1Q2UY09 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.34□□□□□ -2.46
COL28A1Q2UY09 AL445193.1-201ENST00000441183 141 ntBASIC-0.34□□□□□ -2.46
COL28A1Q2UY09 IGLL4P-201ENST00000614590 133 ntBASIC-0.34□□□□□ -2.46
COL28A1Q2UY09 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.35□□□□□ -2.47
COL28A1Q2UY09 RNU6-979P-201ENST00000383896 107 ntBASIC-0.35□□□□□ -2.47
COL28A1Q2UY09 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.35□□□□□ -2.47
COL28A1Q2UY09 RNU6-303P-201ENST00000517091 106 ntBASIC-0.35□□□□□ -2.47
COL28A1Q2UY09 MIR5588-201ENST00000581890 63 ntBASIC-0.35□□□□□ -2.47
COL28A1Q2UY09 MIR6739-201ENST00000622461 75 ntBASIC-0.35□□□□□ -2.47
COL28A1Q2UY09 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.36□□□□□ -2.47
COL28A1Q2UY09 MIR521-2-201ENST00000384818 87 ntBASIC-0.36□□□□□ -2.47
COL28A1Q2UY09 SNORA3B-201ENST00000391305 131 ntBASIC-0.36□□□□□ -2.47
COL28A1Q2UY09 MIR6851-201ENST00000617060 67 ntBASIC-0.36□□□□□ -2.47
COL28A1Q2UY09 snoR1.1-201ENST00000628177 80 ntBASIC-0.36□□□□□ -2.47
COL28A1Q2UY09 RNU6-294P-201ENST00000364999 102 ntBASIC-0.37□□□□□ -2.47
COL28A1Q2UY09 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.37□□□□□ -2.47
COL28A1Q2UY09 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.37□□□□□ -2.47
COL28A1Q2UY09 MT-TQ-201ENST00000387372 72 ntBASIC-0.37□□□□□ -2.47
COL28A1Q2UY09 AC074348.1-201ENST00000426503 132 ntBASIC-0.37□□□□□ -2.47
COL28A1Q2UY09 MIR5582-201ENST00000579697 68 ntBASIC-0.37□□□□□ -2.47
COL28A1Q2UY09 MIR5704-201ENST00000584029 77 ntBASIC-0.37□□□□□ -2.47
COL28A1Q2UY09 U4.2-201ENST00000618561 85 ntBASIC-0.37□□□□□ -2.47
COL28A1Q2UY09 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.38□□□□□ -2.47
COL28A1Q2UY09 SNORD38.3-201ENST00000516599 73 ntBASIC-0.38□□□□□ -2.47
COL28A1Q2UY09 RNU6-330P-201ENST00000363015 107 ntBASIC-0.39□□□□□ -2.47
COL28A1Q2UY09 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.39□□□□□ -2.47
COL28A1Q2UY09 RNU7-171P-201ENST00000459581 62 ntBASIC-0.39□□□□□ -2.47
COL28A1Q2UY09 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.39□□□□□ -2.47
COL28A1Q2UY09 CYP3A54P-201ENST00000566950 75 ntBASIC-0.39□□□□□ -2.47
COL28A1Q2UY09 MIR6854-201ENST00000614935 69 ntBASIC-0.39□□□□□ -2.47
COL28A1Q2UY09 MIR8068-201ENST00000618032 68 ntBASIC-0.39□□□□□ -2.47
COL28A1Q2UY09 SNORD114-14-201ENST00000362723 75 ntBASIC-0.4□□□□□ -2.47
COL28A1Q2UY09 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.4□□□□□ -2.47
COL28A1Q2UY09 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.4□□□□□ -2.47
COL28A1Q2UY09 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.4□□□□□ -2.47
COL28A1Q2UY09 MIR450A2-201ENST00000385022 100 ntBASIC-0.4□□□□□ -2.47
COL28A1Q2UY09 MIR1207-201ENST00000408249 87 ntBASIC-0.4□□□□□ -2.47
COL28A1Q2UY09 AC022137.1-201ENST00000483735 151 ntBASIC-0.4□□□□□ -2.47
COL28A1Q2UY09 MIR3675-201ENST00000583661 73 ntBASIC-0.4□□□□□ -2.47
COL28A1Q2UY09 MIR494-201ENST00000349529 81 ntBASIC-0.41□□□□□ -2.48
COL28A1Q2UY09 RNU6-1298P-201ENST00000362456 101 ntBASIC-0.41□□□□□ -2.48
COL28A1Q2UY09 RNU6-315P-201ENST00000362666 107 ntBASIC-0.41□□□□□ -2.48
COL28A1Q2UY09 SNORA8.1-201ENST00000384250 140 ntBASIC-0.41□□□□□ -2.48
COL28A1Q2UY09 MIR1255B2-201ENST00000408618 67 ntBASIC-0.41□□□□□ -2.48
COL28A1Q2UY09 MIR1297-201ENST00000637311 77 ntBASIC-0.41□□□□□ -2.48
COL28A1Q2UY09 MIR204-201ENST00000385200 110 ntBASIC-0.42□□□□□ -2.48
COL28A1Q2UY09 RNA5SP470-201ENST00000516463 106 ntBASIC-0.42□□□□□ -2.48
COL28A1Q2UY09 RNU6-656P-201ENST00000516785 107 ntBASIC-0.42□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 230.6 ms