Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNA5SP147-201ENST00000516493 109 ntBASIC-0.91□□□□□ -2.56
CDX1P47902 AC132825.6-201ENST00000638861 357 ntBASIC-0.91□□□□□ -2.56
CDX1P47902 MIR124-2-201ENST00000385081 109 ntBASIC-0.92□□□□□ -2.56
CDX1P47902 RNU6-479P-201ENST00000516348 105 ntBASIC-0.92□□□□□ -2.56
CDX1P47902 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.92□□□□□ -2.56
CDX1P47902 MIR4324-201ENST00000584846 72 ntBASIC-0.92□□□□□ -2.56
CDX1P47902 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.93□□□□□ -2.56
CDX1P47902 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.93□□□□□ -2.56
CDX1P47902 SNX3P1X-201ENST00000414887 175 ntBASIC-0.93□□□□□ -2.56
CDX1P47902 AL450471.1-201ENST00000447509 127 ntBASIC-0.93□□□□□ -2.56
CDX1P47902 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.93□□□□□ -2.56
CDX1P47902 RNU7-153P-201ENST00000516455 62 ntBASIC-0.93□□□□□ -2.56
CDX1P47902 MIR4306-201ENST00000583390 91 ntBASIC-0.93□□□□□ -2.56
CDX1P47902 AL031737.1-201ENST00000450125 223 ntBASIC-0.94□□□□□ -2.56
CDX1P47902 MIR2052-201ENST00000636055 55 ntBASIC-0.94□□□□□ -2.56
CDX1P47902 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.95□□□□□ -2.56
CDX1P47902 MTATP8P2-201ENST00000435212 202 ntBASIC-0.95□□□□□ -2.56
CDX1P47902 MIR3910-1-201ENST00000580936 111 ntBASIC-0.95□□□□□ -2.56
CDX1P47902 YWHAEP3-201ENST00000582767 121 ntBASIC-0.95□□□□□ -2.56
CDX1P47902 MIR3657-201ENST00000584818 117 ntBASIC-0.95□□□□□ -2.56
CDX1P47902 MIR4320-201ENST00000636981 65 ntBASIC-0.95□□□□□ -2.56
CDX1P47902 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.96□□□□□ -2.56
CDX1P47902 U6.81-201ENST00000612550 106 ntBASIC-0.96□□□□□ -2.56
CDX1P47902 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.96□□□□□ -2.56
CDX1P47902 SNORA2.1-201ENST00000363089 137 ntBASIC-0.97□□□□□ -2.56
CDX1P47902 SNORA62.4-201ENST00000365504 151 ntBASIC-0.97□□□□□ -2.56
CDX1P47902 MIR519C-201ENST00000385053 87 ntBASIC-0.97□□□□□ -2.56
CDX1P47902 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.97□□□□□ -2.56
CDX1P47902 RNU6-208P-201ENST00000362431 107 ntBASIC-0.98□□□□□ -2.57
CDX1P47902 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.98□□□□□ -2.57
CDX1P47902 RNU6-158P-201ENST00000517104 100 ntBASIC-0.98□□□□□ -2.57
CDX1P47902 MIR4464-201ENST00000580818 92 ntBASIC-0.98□□□□□ -2.57
CDX1P47902 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.99□□□□□ -2.57
CDX1P47902 RNU2-51P-201ENST00000410708 197 ntBASIC-0.99□□□□□ -2.57
CDX1P47902 RNU7-134P-201ENST00000458997 64 ntBASIC-0.99□□□□□ -2.57
CDX1P47902 MIR450A1-201ENST00000362262 91 ntBASIC-1□□□□□ -2.57
CDX1P47902 SNORD115-37-201ENST00000363768 82 ntBASIC-1□□□□□ -2.57
CDX1P47902 Y_RNA.273-201ENST00000364703 102 ntBASIC-1□□□□□ -2.57
CDX1P47902 Y_RNA.606-201ENST00000410579 103 ntBASIC-1□□□□□ -2.57
CDX1P47902 MIR1468-201ENST00000410600 86 ntBASIC-1□□□□□ -2.57
CDX1P47902 RNU6-706P-201ENST00000517229 104 ntBASIC-1□□□□□ -2.57
CDX1P47902 MIR3165-201ENST00000579874 75 ntBASIC-1□□□□□ -2.57
CDX1P47902 AC090617.8-201ENST00000623339 167 ntBASIC-1□□□□□ -2.57
CDX1P47902 MIR198-201ENST00000637333 62 ntBASIC-1□□□□□ -2.57
CDX1P47902 RNU6-681P-201ENST00000364012 104 ntBASIC-1.01□□□□□ -2.57
CDX1P47902 SNORD115-27-201ENST00000364430 82 ntBASIC-1.01□□□□□ -2.57
CDX1P47902 SNORA33.1-201ENST00000364957 130 ntBASIC-1.01□□□□□ -2.57
CDX1P47902 AL353803.5-201ENST00000599815 141 ntBASIC-1.01□□□□□ -2.57
CDX1P47902 AL445584.3-201ENST00000617173 78 ntBASIC-1.01□□□□□ -2.57
CDX1P47902 MIR6888-201ENST00000621977 67 ntBASIC-1.01□□□□□ -2.57
CDX1P47902 RNA5SP192-201ENST00000364404 120 ntBASIC-1.02□□□□□ -2.57
CDX1P47902 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.02□□□□□ -2.57
CDX1P47902 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.03□□□□□ -2.57
CDX1P47902 MIR29B1-201ENST00000385015 81 ntBASIC-1.03□□□□□ -2.57
CDX1P47902 MIR8485-201ENST00000401372 91 ntBASIC-1.03□□□□□ -2.57
CDX1P47902 RNU6-752P-201ENST00000516376 102 ntBASIC-1.03□□□□□ -2.57
CDX1P47902 MIR3115-201ENST00000577915 68 ntBASIC-1.03□□□□□ -2.57
CDX1P47902 MIR601-201ENST00000385256 79 ntBASIC-1.04□□□□□ -2.58
CDX1P47902 SNORD77.2-201ENST00000391045 68 ntBASIC-1.04□□□□□ -2.58
CDX1P47902 RNY4P18-201ENST00000391107 89 ntBASIC-1.04□□□□□ -2.58
CDX1P47902 MIR1255B2-201ENST00000408618 67 ntBASIC-1.04□□□□□ -2.58
CDX1P47902 SNORD63.1-201ENST00000516178 80 ntBASIC-1.04□□□□□ -2.58
CDX1P47902 SNORA40.13-201ENST00000516379 120 ntBASIC-1.04□□□□□ -2.58
CDX1P47902 CYP3A54P-201ENST00000566950 75 ntBASIC-1.04□□□□□ -2.58
CDX1P47902 MIR6818-201ENST00000621576 65 ntBASIC-1.04□□□□□ -2.58
CDX1P47902 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.04□□□□□ -2.58
CDX1P47902 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.05□□□□□ -2.58
CDX1P47902 RNU6-340P-201ENST00000364005 107 ntBASIC-1.05□□□□□ -2.58
CDX1P47902 MIR527-201ENST00000385244 85 ntBASIC-1.05□□□□□ -2.58
CDX1P47902 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.05□□□□□ -2.58
CDX1P47902 MIR4668-201ENST00000582284 70 ntBASIC-1.05□□□□□ -2.58
CDX1P47902 AC138207.3-201ENST00000585289 166 ntBASIC-1.05□□□□□ -2.58
CDX1P47902 RNU6-633P-201ENST00000362612 103 ntBASIC-1.06□□□□□ -2.58
CDX1P47902 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.06□□□□□ -2.58
CDX1P47902 MIR521-2-201ENST00000384818 87 ntBASIC-1.06□□□□□ -2.58
CDX1P47902 RNU6-576P-201ENST00000390854 102 ntBASIC-1.06□□□□□ -2.58
CDX1P47902 RNU4-61P-201ENST00000411243 107 ntBASIC-1.06□□□□□ -2.58
CDX1P47902 AL606753.1-201ENST00000427435 87 ntBASIC-1.06□□□□□ -2.58
CDX1P47902 SNORA26.4-201ENST00000391188 123 ntBASIC-1.07□□□□□ -2.58
CDX1P47902 AP001318.4-201ENST00000616637 121 ntBASIC-1.07□□□□□ -2.58
CDX1P47902 SNORD115-33-201ENST00000363723 82 ntBASIC-1.08□□□□□ -2.58
CDX1P47902 SNORD116-22-201ENST00000384430 92 ntBASIC-1.08□□□□□ -2.58
CDX1P47902 MIR889-201ENST00000401280 79 ntBASIC-1.08□□□□□ -2.58
CDX1P47902 HLA-S-202ENST00000425174 53 ntBASIC-1.08□□□□□ -2.58
CDX1P47902 RNU6-924P-201ENST00000362926 108 ntBASIC-1.09□□□□□ -2.58
CDX1P47902 AC093729.1-201ENST00000513074 128 ntBASIC-1.09□□□□□ -2.58
CDX1P47902 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.09□□□□□ -2.58
CDX1P47902 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.09□□□□□ -2.58
CDX1P47902 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.09□□□□□ -2.58
CDX1P47902 SNORD115-22-201ENST00000364456 82 ntBASIC-1.1□□□□□ -2.59
CDX1P47902 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.1□□□□□ -2.59
CDX1P47902 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.1□□□□□ -2.59
CDX1P47902 MIR5591-201ENST00000578248 65 ntBASIC-1.1□□□□□ -2.59
CDX1P47902 RNA5SP26-201ENST00000362406 119 ntBASIC-1.11□□□□□ -2.59
CDX1P47902 MALAT1.1-201ENST00000618249 95 ntBASIC-1.11□□□□□ -2.59
CDX1P47902 MIR6739-201ENST00000622461 75 ntBASIC-1.11□□□□□ -2.59
CDX1P47902 AC091912.2-201ENST00000624798 167 ntBASIC-1.11□□□□□ -2.59
CDX1P47902 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.12□□□□□ -2.59
CDX1P47902 SNORD113-1-201ENST00000365321 69 ntBASIC-1.12□□□□□ -2.59
CDX1P47902 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.12□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms