Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 MIR587-201ENST00000384845 96 ntBASIC-1.12□□□□□ -2.59
HOXD13P35453 AL450471.1-201ENST00000447509 127 ntBASIC-1.12□□□□□ -2.59
HOXD13P35453 RNU6-479P-201ENST00000516348 105 ntBASIC-1.12□□□□□ -2.59
HOXD13P35453 U6.81-201ENST00000612550 106 ntBASIC-1.12□□□□□ -2.59
HOXD13P35453 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.13□□□□□ -2.59
HOXD13P35453 MT-TR-201ENST00000387439 65 ntBASIC-1.13□□□□□ -2.59
HOXD13P35453 CYP3A54P-201ENST00000566950 75 ntBASIC-1.13□□□□□ -2.59
HOXD13P35453 MIR3165-201ENST00000579874 75 ntBASIC-1.13□□□□□ -2.59
HOXD13P35453 MIR6129-201ENST00000616087 109 ntBASIC-1.13□□□□□ -2.59
HOXD13P35453 U7.3-201ENST00000616123 62 ntBASIC-1.13□□□□□ -2.59
HOXD13P35453 MIR8485-201ENST00000401372 91 ntBASIC-1.14□□□□□ -2.59
HOXD13P35453 RNU6-109P-201ENST00000516364 107 ntBASIC-1.14□□□□□ -2.59
HOXD13P35453 RNA5SP67-201ENST00000516422 131 ntBASIC-1.14□□□□□ -2.59
HOXD13P35453 RNU6-184P-201ENST00000516514 107 ntBASIC-1.14□□□□□ -2.59
HOXD13P35453 AC132825.6-201ENST00000638861 357 ntBASIC-1.14□□□□□ -2.59
HOXD13P35453 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.15□□□□□ -2.59
HOXD13P35453 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.15□□□□□ -2.59
HOXD13P35453 MIR4464-201ENST00000580818 92 ntBASIC-1.15□□□□□ -2.59
HOXD13P35453 AL445584.3-201ENST00000617173 78 ntBASIC-1.15□□□□□ -2.59
HOXD13P35453 MIR6888-201ENST00000621977 67 ntBASIC-1.15□□□□□ -2.59
HOXD13P35453 RNU6-766P-201ENST00000362478 107 ntBASIC-1.16□□□□□ -2.6
HOXD13P35453 RNU6-22P-201ENST00000384355 107 ntBASIC-1.16□□□□□ -2.6
HOXD13P35453 RNU7-153P-201ENST00000516455 62 ntBASIC-1.16□□□□□ -2.6
HOXD13P35453 AC138207.3-201ENST00000585289 166 ntBASIC-1.16□□□□□ -2.6
HOXD13P35453 MIR2052-201ENST00000636055 55 ntBASIC-1.16□□□□□ -2.6
HOXD13P35453 RNU6-924P-201ENST00000362926 108 ntBASIC-1.17□□□□□ -2.6
HOXD13P35453 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.17□□□□□ -2.6
HOXD13P35453 MIR521-2-201ENST00000384818 87 ntBASIC-1.17□□□□□ -2.6
HOXD13P35453 RNU6-589P-201ENST00000516485 107 ntBASIC-1.17□□□□□ -2.6
HOXD13P35453 SNORA19-201ENST00000384737 128 ntBASIC-1.18□□□□□ -2.6
HOXD13P35453 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.18□□□□□ -2.6
HOXD13P35453 RNU6-752P-201ENST00000516376 102 ntBASIC-1.18□□□□□ -2.6
HOXD13P35453 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.18□□□□□ -2.6
HOXD13P35453 RNU6-681P-201ENST00000364012 104 ntBASIC-1.19□□□□□ -2.6
HOXD13P35453 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.19□□□□□ -2.6
HOXD13P35453 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.19□□□□□ -2.6
HOXD13P35453 MIR29B1-201ENST00000385015 81 ntBASIC-1.2□□□□□ -2.6
HOXD13P35453 MIR519C-201ENST00000385053 87 ntBASIC-1.2□□□□□ -2.6
HOXD13P35453 MIR889-201ENST00000401280 79 ntBASIC-1.2□□□□□ -2.6
HOXD13P35453 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.2□□□□□ -2.6
HOXD13P35453 HLA-S-202ENST00000425174 53 ntBASIC-1.2□□□□□ -2.6
HOXD13P35453 RNU6-313P-201ENST00000516317 112 ntBASIC-1.2□□□□□ -2.6
HOXD13P35453 RNU6-158P-201ENST00000517104 100 ntBASIC-1.2□□□□□ -2.6
HOXD13P35453 MIR409-201ENST00000362237 79 ntBASIC-1.21□□□□□ -2.6
HOXD13P35453 RNU6-518P-201ENST00000516056 96 ntBASIC-1.21□□□□□ -2.6
HOXD13P35453 SNORD115-37-201ENST00000363768 82 ntBASIC-1.22□□□□□ -2.6
HOXD13P35453 SNORD77.2-201ENST00000391045 68 ntBASIC-1.22□□□□□ -2.6
HOXD13P35453 RNU2-51P-201ENST00000410708 197 ntBASIC-1.22□□□□□ -2.6
HOXD13P35453 MIR5591-201ENST00000578248 65 ntBASIC-1.22□□□□□ -2.6
HOXD13P35453 MIR6818-201ENST00000621576 65 ntBASIC-1.22□□□□□ -2.6
HOXD13P35453 RNU6-340P-201ENST00000364005 107 ntBASIC-1.23□□□□□ -2.61
HOXD13P35453 MIR527-201ENST00000385244 85 ntBASIC-1.23□□□□□ -2.61
HOXD13P35453 AL031737.1-201ENST00000450125 223 ntBASIC-1.23□□□□□ -2.61
HOXD13P35453 RNU7-154P-201ENST00000516194 62 ntBASIC-1.23□□□□□ -2.61
HOXD13P35453 MIR6739-201ENST00000622461 75 ntBASIC-1.23□□□□□ -2.61
HOXD13P35453 RNU6-226P-201ENST00000363778 107 ntBASIC-1.24□□□□□ -2.61
HOXD13P35453 SNORD115-27-201ENST00000364430 82 ntBASIC-1.24□□□□□ -2.61
HOXD13P35453 MTATP8P2-201ENST00000435212 202 ntBASIC-1.24□□□□□ -2.61
HOXD13P35453 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.24□□□□□ -2.61
HOXD13P35453 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.25□□□□□ -2.61
HOXD13P35453 MIR519A2-201ENST00000384990 87 ntBASIC-1.25□□□□□ -2.61
HOXD13P35453 MIR4520-1-201ENST00000582609 70 ntBASIC-1.25□□□□□ -2.61
HOXD13P35453 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.25□□□□□ -2.61
HOXD13P35453 MIR6502-201ENST00000617296 76 ntBASIC-1.25□□□□□ -2.61
HOXD13P35453 AL021921.1-201ENST00000442774 93 ntBASIC-1.26□□□□□ -2.61
HOXD13P35453 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.26□□□□□ -2.61
HOXD13P35453 RNA5SP461-201ENST00000516451 104 ntBASIC-1.26□□□□□ -2.61
HOXD13P35453 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.27□□□□□ -2.61
HOXD13P35453 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.27□□□□□ -2.61
HOXD13P35453 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.27□□□□□ -2.61
HOXD13P35453 AL035461.1-201ENST00000421490 332 ntBASIC-1.27□□□□□ -2.61
HOXD13P35453 SNORD63.1-201ENST00000516178 80 ntBASIC-1.27□□□□□ -2.61
HOXD13P35453 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.27□□□□□ -2.61
HOXD13P35453 MIR4770-201ENST00000579149 58 ntBASIC-1.27□□□□□ -2.61
HOXD13P35453 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.27□□□□□ -2.61
HOXD13P35453 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.28□□□□□ -2.61
HOXD13P35453 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.28□□□□□ -2.61
HOXD13P35453 RNU6-576P-201ENST00000390854 102 ntBASIC-1.28□□□□□ -2.61
HOXD13P35453 SNORA26.4-201ENST00000391188 123 ntBASIC-1.28□□□□□ -2.61
HOXD13P35453 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.28□□□□□ -2.61
HOXD13P35453 MIR4320-201ENST00000636981 65 ntBASIC-1.28□□□□□ -2.61
HOXD13P35453 RNA5SP26-201ENST00000362406 119 ntBASIC-1.29□□□□□ -2.62
HOXD13P35453 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.29□□□□□ -2.62
HOXD13P35453 AC091912.2-201ENST00000624798 167 ntBASIC-1.29□□□□□ -2.62
HOXD13P35453 MIR6874-201ENST00000635894 71 ntBASIC-1.29□□□□□ -2.62
HOXD13P35453 SNORD115-33-201ENST00000363723 82 ntBASIC-1.3□□□□□ -2.62
HOXD13P35453 MIR548C-201ENST00000384815 97 ntBASIC-1.3□□□□□ -2.62
HOXD13P35453 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.31□□□□□ -2.62
HOXD13P35453 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.31□□□□□ -2.62
HOXD13P35453 SNORD57-201ENST00000448188 72 ntBASIC-1.31□□□□□ -2.62
HOXD13P35453 MIR4668-201ENST00000582284 70 ntBASIC-1.31□□□□□ -2.62
HOXD13P35453 RNU6-633P-201ENST00000362612 103 ntBASIC-1.32□□□□□ -2.62
HOXD13P35453 RNU4-61P-201ENST00000411243 107 ntBASIC-1.32□□□□□ -2.62
HOXD13P35453 MIR3910-1-201ENST00000580936 111 ntBASIC-1.32□□□□□ -2.62
HOXD13P35453 SNORD115-22-201ENST00000364456 82 ntBASIC-1.33□□□□□ -2.62
HOXD13P35453 RNA5SP266-201ENST00000410273 108 ntBASIC-1.33□□□□□ -2.62
HOXD13P35453 MIR450A1-201ENST00000362262 91 ntBASIC-1.34□□□□□ -2.62
HOXD13P35453 RNA5SP86-201ENST00000390869 98 ntBASIC-1.34□□□□□ -2.62
HOXD13P35453 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.35□□□□□ -2.63
HOXD13P35453 AL353691.2-201ENST00000443795 59 ntBASIC-1.35□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms