Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RNU6-458P-201ENST00000384179 107 ntBASIC-3.48□□□□□ -2.97
TPM1P09493 RNU6-696P-201ENST00000390834 107 ntBASIC-3.48□□□□□ -2.97
TPM1P09493 U6.58-201ENST00000613107 107 ntBASIC-3.48□□□□□ -2.97
TPM1P09493 AL157777.2-201ENST00000258070 137 ntBASIC-3.49□□□□□ -2.97
TPM1P09493 Y_RNA.180-201ENST00000363867 113 ntBASIC-3.5□□□□□ -2.97
TPM1P09493 RNU6-630P-201ENST00000391258 106 ntBASIC-3.5□□□□□ -2.97
TPM1P09493 MIR1302-3-201ENST00000408128 138 ntBASIC-3.5□□□□□ -2.97
TPM1P09493 AL035461.1-201ENST00000421490 332 ntBASIC-3.5□□□□□ -2.97
TPM1P09493 AC008737.2-201ENST00000599446 118 ntBASIC-3.5□□□□□ -2.97
TPM1P09493 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-3.5□□□□□ -2.97
TPM1P09493 Y_RNA.96-201ENST00000363092 109 ntBASIC-3.51□□□□□ -2.97
TPM1P09493 Y_RNA.145-201ENST00000363527 102 ntBASIC-3.51□□□□□ -2.97
TPM1P09493 MIR569-201ENST00000385228 96 ntBASIC-3.51□□□□□ -2.97
TPM1P09493 MIR548A3-201ENST00000385297 97 ntBASIC-3.51□□□□□ -2.97
TPM1P09493 Y_RNA.649-201ENST00000459077 103 ntBASIC-3.51□□□□□ -2.97
TPM1P09493 MIR4756-201ENST00000577874 78 ntBASIC-3.51□□□□□ -2.97
TPM1P09493 MIR23C-201ENST00000579846 100 ntBASIC-3.51□□□□□ -2.97
TPM1P09493 Y_RNA.700-201ENST00000516806 100 ntBASIC-3.52□□□□□ -2.97
TPM1P09493 MIR664B-201ENST00000626756 61 ntBASIC-3.52□□□□□ -2.97
TPM1P09493 SNORD116-10-201ENST00000363791 102 ntBASIC-3.53□□□□□ -2.97
TPM1P09493 RNU6-841P-201ENST00000383872 107 ntBASIC-3.53□□□□□ -2.97
TPM1P09493 MTCYBP9-201ENST00000431021 303 ntBASIC-3.53□□□□□ -2.97
TPM1P09493 MIR3144-201ENST00000579460 79 ntBASIC-3.53□□□□□ -2.97
TPM1P09493 MIR520D-201ENST00000385002 87 ntBASIC-3.54□□□□□ -2.98
TPM1P09493 Y_RNA.609-201ENST00000410669 89 ntBASIC-3.54□□□□□ -2.98
TPM1P09493 MIR3123-201ENST00000583417 75 ntBASIC-3.54□□□□□ -2.98
TPM1P09493 Y_RNA.400-201ENST00000383963 111 ntBASIC-3.55□□□□□ -2.98
TPM1P09493 RNU6-1152P-201ENST00000384576 107 ntBASIC-3.55□□□□□ -2.98
TPM1P09493 MIR548C-201ENST00000384815 97 ntBASIC-3.55□□□□□ -2.98
TPM1P09493 MIR429-201ENST00000362106 83 ntBASIC-3.56□□□□□ -2.98
TPM1P09493 RNU6-645P-201ENST00000364649 106 ntBASIC-3.56□□□□□ -2.98
TPM1P09493 RNU6-394P-201ENST00000410735 107 ntBASIC-3.56□□□□□ -2.98
TPM1P09493 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-3.57□□□□□ -2.98
TPM1P09493 SCARNA23-201ENST00000516060 130 ntBASIC-3.57□□□□□ -2.98
TPM1P09493 RNU6-1262P-201ENST00000516217 96 ntBASIC-3.57□□□□□ -2.98
TPM1P09493 RNU6-537P-201ENST00000517277 103 ntBASIC-3.57□□□□□ -2.98
TPM1P09493 Y_RNA.74-201ENST00000362911 99 ntBASIC-3.58□□□□□ -2.98
TPM1P09493 MIR606-201ENST00000384851 96 ntBASIC-3.59□□□□□ -2.98
TPM1P09493 MIR548AM-201ENST00000584298 74 ntBASIC-3.59□□□□□ -2.98
TPM1P09493 Y_RNA.307-201ENST00000365022 117 ntBASIC-3.6□□□□□ -2.99
TPM1P09493 AC120024.2-201ENST00000576526 175 ntBASIC-3.6□□□□□ -2.99
TPM1P09493 SNORD77.2-201ENST00000391045 68 ntBASIC-3.61□□□□□ -2.99
TPM1P09493 RNU6-563P-201ENST00000364872 108 ntBASIC-3.62□□□□□ -2.99
TPM1P09493 MIR568-201ENST00000385036 95 ntBASIC-3.62□□□□□ -2.99
TPM1P09493 RNU7-153P-201ENST00000516455 62 ntBASIC-3.62□□□□□ -2.99
TPM1P09493 RNU7-174P-201ENST00000516248 59 ntBASIC-3.63□□□□□ -2.99
TPM1P09493 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-3.63□□□□□ -2.99
TPM1P09493 Y_RNA.284-201ENST00000364806 102 ntBASIC-3.64□□□□□ -2.99
TPM1P09493 RNU6-980P-201ENST00000516925 103 ntBASIC-3.64□□□□□ -2.99
TPM1P09493 Y_RNA.55-201ENST00000362797 102 ntBASIC-3.66□□□□□ -3
TPM1P09493 Y_RNA.282-201ENST00000364793 102 ntBASIC-3.66□□□□□ -3
TPM1P09493 MIR1468-201ENST00000410600 86 ntBASIC-3.66□□□□□ -3
TPM1P09493 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-3.66□□□□□ -3
TPM1P09493 Y_RNA.109-201ENST00000363215 102 ntBASIC-3.67□□□□□ -3
TPM1P09493 RNU6-904P-201ENST00000516206 101 ntBASIC-3.67□□□□□ -3
TPM1P09493 Y_RNA.225-201ENST00000364326 97 ntBASIC-3.68□□□□□ -3
TPM1P09493 Y_RNA.264-201ENST00000364665 102 ntBASIC-3.68□□□□□ -3
TPM1P09493 Y_RNA.449-201ENST00000384187 102 ntBASIC-3.68□□□□□ -3
TPM1P09493 MTND4LP9-201ENST00000427694 174 ntBASIC-3.68□□□□□ -3
TPM1P09493 Y_RNA.413-201ENST00000384007 102 ntBASIC-3.69□□□□□ -3
TPM1P09493 RNU6-804P-201ENST00000384286 107 ntBASIC-3.69□□□□□ -3
TPM1P09493 Y_RNA.754-201ENST00000476024 102 ntBASIC-3.69□□□□□ -3
TPM1P09493 RNU6-426P-201ENST00000516464 97 ntBASIC-3.69□□□□□ -3
TPM1P09493 Y_RNA.790-201ENST00000614282 102 ntBASIC-3.69□□□□□ -3
TPM1P09493 Y_RNA.782-201ENST00000614695 102 ntBASIC-3.69□□□□□ -3
TPM1P09493 AL627230.5-201ENST00000619807 58 ntBASIC-3.69□□□□□ -3
TPM1P09493 Y_RNA.8-201ENST00000362353 102 ntBASIC-3.7□□□□□ -3
TPM1P09493 Y_RNA.398-201ENST00000383952 99 ntBASIC-3.7□□□□□ -3
TPM1P09493 RNU6-598P-201ENST00000364017 105 ntBASIC-3.71□□□□□ -3
TPM1P09493 Y_RNA.281-201ENST00000364774 94 ntBASIC-3.71□□□□□ -3
TPM1P09493 RNU6-258P-201ENST00000390884 101 ntBASIC-3.71□□□□□ -3
TPM1P09493 RNU6-587P-201ENST00000391282 106 ntBASIC-3.71□□□□□ -3
TPM1P09493 Y_RNA.325-201ENST00000365171 122 ntBASIC-3.72□□□□□ -3
TPM1P09493 RNU6-1034P-201ENST00000365335 101 ntBASIC-3.72□□□□□ -3
TPM1P09493 Y_RNA.375-201ENST00000365625 101 ntBASIC-3.72□□□□□ -3
TPM1P09493 RNU7-107P-201ENST00000459121 61 ntBASIC-3.72□□□□□ -3
TPM1P09493 MIR3914-2-201ENST00000637339 95 ntBASIC-3.72□□□□□ -3
TPM1P09493 RNU6-738P-201ENST00000384531 106 ntBASIC-3.73□□□□□ -3.01
TPM1P09493 Y_RNA.781-201ENST00000620301 103 ntBASIC-3.73□□□□□ -3.01
TPM1P09493 RNU6-574P-201ENST00000384265 107 ntBASIC-3.74□□□□□ -3.01
TPM1P09493 RNU4-88P-201ENST00000411220 86 ntBASIC-3.74□□□□□ -3.01
TPM1P09493 SNORD33.1-201ENST00000516213 88 ntBASIC-3.74□□□□□ -3.01
TPM1P09493 RNU6-1089P-201ENST00000516473 104 ntBASIC-3.75□□□□□ -3.01
TPM1P09493 U4.2-201ENST00000618561 85 ntBASIC-3.75□□□□□ -3.01
TPM1P09493 RNU6-880P-201ENST00000384526 107 ntBASIC-3.76□□□□□ -3.01
TPM1P09493 RNU6-1111P-201ENST00000391118 107 ntBASIC-3.76□□□□□ -3.01
TPM1P09493 RNU7-61P-201ENST00000515897 61 ntBASIC-3.76□□□□□ -3.01
TPM1P09493 RNU6-200P-201ENST00000364743 107 ntBASIC-3.77□□□□□ -3.01
TPM1P09493 Y_RNA.525-201ENST00000384570 113 ntBASIC-3.77□□□□□ -3.01
TPM1P09493 U2.18-201ENST00000622185 84 ntBASIC-3.77□□□□□ -3.01
TPM1P09493 Y_RNA.193-201ENST00000363979 102 ntBASIC-3.78□□□□□ -3.01
TPM1P09493 MIR519C-201ENST00000385053 87 ntBASIC-3.78□□□□□ -3.01
TPM1P09493 SNORA40-201ENST00000388090 126 ntBASIC-3.78□□□□□ -3.01
TPM1P09493 RNU6-1108P-201ENST00000516308 104 ntBASIC-3.78□□□□□ -3.01
TPM1P09493 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-3.78□□□□□ -3.01
TPM1P09493 RNU6-698P-201ENST00000363523 107 ntBASIC-3.79□□□□□ -3.02
TPM1P09493 RNU6-34P-201ENST00000364874 107 ntBASIC-3.79□□□□□ -3.02
TPM1P09493 Y_RNA.489-201ENST00000384410 101 ntBASIC-3.79□□□□□ -3.02
TPM1P09493 MIR3170-201ENST00000582699 77 ntBASIC-3.79□□□□□ -3.02
TPM1P09493 U6.95-201ENST00000636931 70 ntBASIC-3.79□□□□□ -3.02
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms