Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU6-1089P-201ENST00000516473 104 ntBASIC1.15□□□□□ -2.23
LIMD1Q9UGP4 AL590095.2-201ENST00000604136 117 ntBASIC1.15□□□□□ -2.23
LIMD1Q9UGP4 SNORA2A-201ENST00000383885 135 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 AC069271.1-201ENST00000445577 156 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 Y_RNA.633-201ENST00000459107 95 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 ACA64.5-201ENST00000516207 127 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 MIR5000-201ENST00000577717 103 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 MIR4752-201ENST00000579672 72 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 AC211469.2-201ENST00000605461 205 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 SNORA25.18-201ENST00000607153 114 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 AL109933.3-201ENST00000619095 188 ntBASIC1.14□□□□□ -2.23
LIMD1Q9UGP4 MIR373-201ENST00000362273 69 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 Y_RNA.125-201ENST00000363371 111 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 MIR1285-1-201ENST00000408593 84 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 AC110620.1-201ENST00000416042 228 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 SNORD2-201ENST00000459163 69 ntBASIC1.13□□□□□ -2.23
LIMD1Q9UGP4 MIR20A-201ENST00000362279 71 ntBASIC1.12□□□□□ -2.23
LIMD1Q9UGP4 HMGN2P22-201ENST00000427588 175 ntBASIC1.12□□□□□ -2.23
LIMD1Q9UGP4 AC244090.1-201ENST00000441884 93 ntBASIC1.12□□□□□ -2.23
LIMD1Q9UGP4 Y_RNA.374-201ENST00000365606 101 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 MIR518A1-201ENST00000385068 85 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 MIR548E-201ENST00000408287 88 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 snoU13.13-201ENST00000458842 104 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 RN7SL793P-201ENST00000583259 296 ntBASIC1.11□□□□□ -2.23
LIMD1Q9UGP4 MIR9-2-201ENST00000384838 87 ntBASIC1.1□□□□□ -2.23
LIMD1Q9UGP4 AL157398.1-201ENST00000452981 186 ntBASIC1.1□□□□□ -2.23
LIMD1Q9UGP4 RNU6-229P-201ENST00000516614 102 ntBASIC1.1□□□□□ -2.23
LIMD1Q9UGP4 RNU1-29P-201ENST00000606574 126 ntBASIC1.1□□□□□ -2.23
LIMD1Q9UGP4 SNORD114-21-201ENST00000606412 72 ntBASIC1.09□□□□□ -2.23
LIMD1Q9UGP4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.24
LIMD1Q9UGP4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.08□□□□□ -2.24
LIMD1Q9UGP4 MIR216A-201ENST00000385063 110 ntBASIC1.08□□□□□ -2.24
LIMD1Q9UGP4 RNA5SP299-201ENST00000391203 116 ntBASIC1.08□□□□□ -2.24
LIMD1Q9UGP4 CYP3A137P-201ENST00000562436 69 ntBASIC1.08□□□□□ -2.24
LIMD1Q9UGP4 SNORD114-29-201ENST00000364819 70 ntBASIC1.07□□□□□ -2.24
LIMD1Q9UGP4 PSMC1P5-201ENST00000512850 177 ntBASIC1.07□□□□□ -2.24
LIMD1Q9UGP4 RNU6-863P-201ENST00000515989 104 ntBASIC1.07□□□□□ -2.24
LIMD1Q9UGP4 MIR3973-201ENST00000579824 107 ntBASIC1.07□□□□□ -2.24
LIMD1Q9UGP4 MIR548C-201ENST00000384815 97 ntBASIC1.06□□□□□ -2.24
LIMD1Q9UGP4 SCARNA21.1-201ENST00000515996 128 ntBASIC1.06□□□□□ -2.24
LIMD1Q9UGP4 MIR582-201ENST00000365731 98 ntBASIC1.05□□□□□ -2.24
LIMD1Q9UGP4 SNORA33.1-201ENST00000364957 130 ntBASIC1.04□□□□□ -2.24
LIMD1Q9UGP4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
LIMD1Q9UGP4 SNORA25.5-201ENST00000363782 126 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 RNU4-38P-201ENST00000364472 129 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 Y_RNA.423-201ENST00000384057 113 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 AC098934.3-201ENST00000430450 190 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 MIR6857-201ENST00000613267 93 ntBASIC1.03□□□□□ -2.24
LIMD1Q9UGP4 RNU6-940P-201ENST00000363433 104 ntBASIC1.02□□□□□ -2.25
LIMD1Q9UGP4 MIR517B-201ENST00000385102 67 ntBASIC1.02□□□□□ -2.25
LIMD1Q9UGP4 MIR532-201ENST00000385025 91 ntBASIC1.01□□□□□ -2.25
LIMD1Q9UGP4 U6.96-201ENST00000636425 70 ntBASIC1.01□□□□□ -2.25
LIMD1Q9UGP4 Y_RNA.30-201ENST00000362572 97 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 RNU6-499P-201ENST00000365615 107 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 MIR516B1-201ENST00000385211 90 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 MIR4698-201ENST00000577795 80 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 U2.7-201ENST00000619197 100 ntBASIC1□□□□□ -2.25
LIMD1Q9UGP4 SNORD113-2-201ENST00000391082 72 ntBASIC0.99□□□□□ -2.25
LIMD1Q9UGP4 MIR548V-201ENST00000584165 80 ntBASIC0.99□□□□□ -2.25
LIMD1Q9UGP4 MIR4653-201ENST00000585107 83 ntBASIC0.99□□□□□ -2.25
LIMD1Q9UGP4 AC243829.6-201ENST00000612652 106 ntBASIC0.99□□□□□ -2.25
LIMD1Q9UGP4 RNU6-698P-201ENST00000363523 107 ntBASIC0.98□□□□□ -2.25
LIMD1Q9UGP4 RNU6-34P-201ENST00000364874 107 ntBASIC0.98□□□□□ -2.25
LIMD1Q9UGP4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.98□□□□□ -2.25
LIMD1Q9UGP4 RNU6-92P-201ENST00000605893 104 ntBASIC0.97□□□□□ -2.25
LIMD1Q9UGP4 AC103810.9-201ENST00000606688 112 ntBASIC0.97□□□□□ -2.25
LIMD1Q9UGP4 MIR760-201ENST00000390220 80 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 RNU7-174P-201ENST00000516248 59 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 RNU4-54P-201ENST00000516428 129 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 MIR4677-201ENST00000584153 80 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 MIR6755-201ENST00000619993 66 ntBASIC0.96□□□□□ -2.26
LIMD1Q9UGP4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
LIMD1Q9UGP4 MIR4714-201ENST00000580728 77 ntBASIC0.95□□□□□ -2.26
LIMD1Q9UGP4 MIR548AD-201ENST00000584780 82 ntBASIC0.95□□□□□ -2.26
LIMD1Q9UGP4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 MIR193B-201ENST00000384907 83 ntBASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 MIR501-201ENST00000390204 84 ntBASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 RNU7-188P-201ENST00000517063 64 ntBASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 AC084368.1-201ENST00000620935 65 ntBASIC0.94□□□□□ -2.26
LIMD1Q9UGP4 RNA5SP192-201ENST00000364404 120 ntBASIC0.93□□□□□ -2.26
LIMD1Q9UGP4 CYP3A54P-201ENST00000566950 75 ntBASIC0.93□□□□□ -2.26
LIMD1Q9UGP4 MIR1273G-201ENST00000577677 100 ntBASIC0.93□□□□□ -2.26
LIMD1Q9UGP4 RNA5SP128-201ENST00000365305 116 ntBASIC0.92□□□□□ -2.26
LIMD1Q9UGP4 AL021921.1-201ENST00000442774 93 ntBASIC0.92□□□□□ -2.26
LIMD1Q9UGP4 MIR630-201ENST00000384957 97 ntBASIC0.91□□□□□ -2.26
LIMD1Q9UGP4 RNU6-945P-201ENST00000383947 107 ntBASIC0.9□□□□□ -2.27
LIMD1Q9UGP4 RPL39P28-201ENST00000465655 155 ntBASIC0.9□□□□□ -2.27
LIMD1Q9UGP4 MIR6513-201ENST00000621188 64 ntBASIC0.9□□□□□ -2.27
LIMD1Q9UGP4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
LIMD1Q9UGP4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.89□□□□□ -2.27
LIMD1Q9UGP4 RNU6-122P-201ENST00000516818 107 ntBASIC0.89□□□□□ -2.27
LIMD1Q9UGP4 MIR466-201ENST00000580653 84 ntBASIC0.89□□□□□ -2.27
LIMD1Q9UGP4 MIR936-201ENST00000401264 98 ntBASIC0.87□□□□□ -2.27
LIMD1Q9UGP4 AC243829.3-201ENST00000622177 108 ntBASIC0.87□□□□□ -2.27
LIMD1Q9UGP4 SNORD44.1-201ENST00000363202 61 ntBASIC0.86□□□□□ -2.27
LIMD1Q9UGP4 Y_RNA.246-201ENST00000364495 108 ntBASIC0.85□□□□□ -2.27
LIMD1Q9UGP4 SNORA75.1-201ENST00000391130 148 ntBASIC0.85□□□□□ -2.27
LIMD1Q9UGP4 RNA5SP121-201ENST00000516537 101 ntBASIC0.85□□□□□ -2.27
LIMD1Q9UGP4 RNU6-175P-201ENST00000516896 107 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 264.7 ms