Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 MIR652-201ENST00000385278 98 ntBASIC0.62□□□□□ -2.31
EBF3Q9H4W6 MIR140-201ENST00000385282 100 ntBASIC0.62□□□□□ -2.31
EBF3Q9H4W6 SNORD110-201ENST00000408189 75 ntBASIC0.62□□□□□ -2.31
EBF3Q9H4W6 MIR4711-201ENST00000578274 70 ntBASIC0.62□□□□□ -2.31
EBF3Q9H4W6 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.62□□□□□ -2.31
EBF3Q9H4W6 AC073869.9-201ENST00000641610 120 ntBASIC0.62□□□□□ -2.31
EBF3Q9H4W6 RNA5SP499-201ENST00000363982 119 ntBASIC0.61□□□□□ -2.31
EBF3Q9H4W6 Y_RNA.443-201ENST00000384135 111 ntBASIC0.61□□□□□ -2.31
EBF3Q9H4W6 AC006210.1-201ENST00000424882 111 ntBASIC0.61□□□□□ -2.31
EBF3Q9H4W6 HMGN2P22-201ENST00000427588 175 ntBASIC0.61□□□□□ -2.31
EBF3Q9H4W6 snoU13.13-201ENST00000458842 104 ntBASIC0.61□□□□□ -2.31
EBF3Q9H4W6 RNU6-1232P-201ENST00000516299 86 ntBASIC0.61□□□□□ -2.31
EBF3Q9H4W6 RNU4-54P-201ENST00000516428 129 ntBASIC0.61□□□□□ -2.31
EBF3Q9H4W6 AC010487.4-201ENST00000637027 61 ntBASIC0.61□□□□□ -2.31
EBF3Q9H4W6 SNORA2.1-201ENST00000363089 137 ntBASIC0.6□□□□□ -2.31
EBF3Q9H4W6 RNU6-645P-201ENST00000364649 106 ntBASIC0.6□□□□□ -2.31
EBF3Q9H4W6 Y_RNA.340-201ENST00000365330 92 ntBASIC0.6□□□□□ -2.31
EBF3Q9H4W6 RNU6-229P-201ENST00000516614 102 ntBASIC0.6□□□□□ -2.31
EBF3Q9H4W6 RNU6-656P-201ENST00000516785 107 ntBASIC0.6□□□□□ -2.31
EBF3Q9H4W6 AC243829.3-201ENST00000622177 108 ntBASIC0.6□□□□□ -2.31
EBF3Q9H4W6 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
EBF3Q9H4W6 SNORD118-201ENST00000363593 134 ntBASIC0.59□□□□□ -2.31
EBF3Q9H4W6 AC092634.7-201ENST00000621022 103 ntBASIC0.59□□□□□ -2.31
EBF3Q9H4W6 Y_RNA.407-201ENST00000383986 113 ntBASIC0.58□□□□□ -2.32
EBF3Q9H4W6 MIR92A1-201ENST00000385233 78 ntBASIC0.58□□□□□ -2.32
EBF3Q9H4W6 SCARNA17.3-201ENST00000516381 125 ntBASIC0.58□□□□□ -2.32
EBF3Q9H4W6 MIR6739-201ENST00000622461 75 ntBASIC0.58□□□□□ -2.32
EBF3Q9H4W6 SNORA25.4-201ENST00000363666 124 ntBASIC0.57□□□□□ -2.32
EBF3Q9H4W6 RNU6-471P-201ENST00000383944 106 ntBASIC0.57□□□□□ -2.32
EBF3Q9H4W6 MIR548E-201ENST00000408287 88 ntBASIC0.57□□□□□ -2.32
EBF3Q9H4W6 Y_RNA.633-201ENST00000459107 95 ntBASIC0.57□□□□□ -2.32
EBF3Q9H4W6 MIR6755-201ENST00000619993 66 ntBASIC0.57□□□□□ -2.32
EBF3Q9H4W6 MIR5087-201ENST00000635826 76 ntBASIC0.57□□□□□ -2.32
EBF3Q9H4W6 MIR924-201ENST00000638017 53 ntBASIC0.57□□□□□ -2.32
EBF3Q9H4W6 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
EBF3Q9H4W6 AL157398.1-201ENST00000452981 186 ntBASIC0.56□□□□□ -2.32
EBF3Q9H4W6 AC125388.1-201ENST00000459631 156 ntBASIC0.56□□□□□ -2.32
EBF3Q9H4W6 uc_338.17-201ENST00000619633 179 ntBASIC0.56□□□□□ -2.32
EBF3Q9H4W6 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.56□□□□□ -2.32
EBF3Q9H4W6 SNORD114-4-201ENST00000363962 75 ntBASIC0.55□□□□□ -2.32
EBF3Q9H4W6 MIR9-2-201ENST00000384838 87 ntBASIC0.55□□□□□ -2.32
EBF3Q9H4W6 MIR518A1-201ENST00000385068 85 ntBASIC0.55□□□□□ -2.32
EBF3Q9H4W6 SNORA40.8-201ENST00000411034 126 ntBASIC0.55□□□□□ -2.32
EBF3Q9H4W6 Y_RNA.374-201ENST00000365606 101 ntBASIC0.54□□□□□ -2.32
EBF3Q9H4W6 Y_RNA.423-201ENST00000384057 113 ntBASIC0.54□□□□□ -2.32
EBF3Q9H4W6 Y_RNA.125-201ENST00000363371 111 ntBASIC0.53□□□□□ -2.32
EBF3Q9H4W6 RNA5SP457-201ENST00000363657 124 ntBASIC0.53□□□□□ -2.32
EBF3Q9H4W6 RNU6-668P-201ENST00000364180 107 ntBASIC0.53□□□□□ -2.32
EBF3Q9H4W6 SNORA33.1-201ENST00000364957 130 ntBASIC0.53□□□□□ -2.32
EBF3Q9H4W6 AC021146.9-201ENST00000512503 156 ntBASIC0.53□□□□□ -2.32
EBF3Q9H4W6 MIR5706-201ENST00000579841 80 ntBASIC0.53□□□□□ -2.32
EBF3Q9H4W6 MIR4511-201ENST00000582784 87 ntBASIC0.53□□□□□ -2.32
EBF3Q9H4W6 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.53□□□□□ -2.32
EBF3Q9H4W6 Y_RNA.375-201ENST00000365625 101 ntBASIC0.52□□□□□ -2.33
EBF3Q9H4W6 MIR521-2-201ENST00000384818 87 ntBASIC0.52□□□□□ -2.33
EBF3Q9H4W6 MIR501-201ENST00000390204 84 ntBASIC0.52□□□□□ -2.33
EBF3Q9H4W6 MTND4LP1-201ENST00000446263 157 ntBASIC0.52□□□□□ -2.33
EBF3Q9H4W6 Y_RNA.115-201ENST00000363272 98 ntBASIC0.51□□□□□ -2.33
EBF3Q9H4W6 Y_RNA.250-201ENST00000364542 110 ntBASIC0.51□□□□□ -2.33
EBF3Q9H4W6 SNORA63.6-201ENST00000364921 119 ntBASIC0.51□□□□□ -2.33
EBF3Q9H4W6 AC114737.2-201ENST00000421583 173 ntBASIC0.51□□□□□ -2.33
EBF3Q9H4W6 RNA5SP121-201ENST00000516537 101 ntBASIC0.51□□□□□ -2.33
EBF3Q9H4W6 uc_338.10-201ENST00000621872 182 ntBASIC0.51□□□□□ -2.33
EBF3Q9H4W6 AC090617.8-201ENST00000623339 167 ntBASIC0.51□□□□□ -2.33
EBF3Q9H4W6 Y_RNA.30-201ENST00000362572 97 ntBASIC0.5□□□□□ -2.33
EBF3Q9H4W6 SNORA2A-201ENST00000383885 135 ntBASIC0.5□□□□□ -2.33
EBF3Q9H4W6 RNU6-945P-201ENST00000383947 107 ntBASIC0.5□□□□□ -2.33
EBF3Q9H4W6 SNORA49-201ENST00000386157 136 ntBASIC0.5□□□□□ -2.33
EBF3Q9H4W6 SNORD71-201ENST00000411292 86 ntBASIC0.5□□□□□ -2.33
EBF3Q9H4W6 RNU6-1089P-201ENST00000516473 104 ntBASIC0.5□□□□□ -2.33
EBF3Q9H4W6 RNU6-1162P-201ENST00000384443 104 ntBASIC0.49□□□□□ -2.33
EBF3Q9H4W6 RNU6-175P-201ENST00000516896 107 ntBASIC0.49□□□□□ -2.33
EBF3Q9H4W6 MIR4677-201ENST00000584153 80 ntBASIC0.49□□□□□ -2.33
EBF3Q9H4W6 MIR8087-201ENST00000612745 78 ntBASIC0.49□□□□□ -2.33
EBF3Q9H4W6 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
EBF3Q9H4W6 SNORD44.1-201ENST00000363202 61 ntBASIC0.48□□□□□ -2.33
EBF3Q9H4W6 MIR516B1-201ENST00000385211 90 ntBASIC0.48□□□□□ -2.33
EBF3Q9H4W6 AC110620.1-201ENST00000416042 228 ntBASIC0.48□□□□□ -2.33
EBF3Q9H4W6 AC243829.6-201ENST00000612652 106 ntBASIC0.48□□□□□ -2.33
EBF3Q9H4W6 U2.7-201ENST00000619197 100 ntBASIC0.48□□□□□ -2.33
EBF3Q9H4W6 AC103706.3-201ENST00000636297 85 ntBASIC0.48□□□□□ -2.33
EBF3Q9H4W6 MIR760-201ENST00000390220 80 ntBASIC0.47□□□□□ -2.33
EBF3Q9H4W6 RNA5SP299-201ENST00000391203 116 ntBASIC0.47□□□□□ -2.33
EBF3Q9H4W6 SNORA68.3-201ENST00000515906 83 ntBASIC0.47□□□□□ -2.33
EBF3Q9H4W6 RNU7-188P-201ENST00000517063 64 ntBASIC0.47□□□□□ -2.33
EBF3Q9H4W6 RNA5SP330-201ENST00000517096 96 ntBASIC0.47□□□□□ -2.33
EBF3Q9H4W6 MIR3925-201ENST00000584674 77 ntBASIC0.47□□□□□ -2.33
EBF3Q9H4W6 MIR103A1-201ENST00000362165 78 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 MIR330-201ENST00000362196 94 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 SNORA15B-2-201ENST00000384058 135 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 SNORA15B-1-201ENST00000384334 135 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
EBF3Q9H4W6 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.46□□□□□ -2.34
EBF3Q9H4W6 RNU6-848P-201ENST00000515948 107 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 RNU6-863P-201ENST00000515989 104 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 RNU6-617P-201ENST00000516147 107 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 RNU6-473P-201ENST00000516164 107 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 RNU6-542P-201ENST00000516405 103 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 RNU6-1049P-201ENST00000516414 107 ntBASIC0.46□□□□□ -2.34
EBF3Q9H4W6 MIR548AD-201ENST00000584780 82 ntBASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 274.6 ms