Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC093729.1-201ENST00000513074 128 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 IGLVI-20-201ENST00000519296 130 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 U6.81-201ENST00000612550 106 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 MIR6507-201ENST00000613630 70 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 SNORD114-31-201ENST00000363219 75 ntBASIC-0.06□□□□□ -2.42
UPF3AQ9H1J1 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.06□□□□□ -2.42
UPF3AQ9H1J1 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.06□□□□□ -2.42
UPF3AQ9H1J1 MIR148A-201ENST00000362215 68 ntBASIC-0.07□□□□□ -2.42
UPF3AQ9H1J1 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.07□□□□□ -2.42
UPF3AQ9H1J1 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.07□□□□□ -2.42
UPF3AQ9H1J1 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.07□□□□□ -2.42
UPF3AQ9H1J1 AC006160.2-201ENST00000637708 154 ntBASIC-0.07□□□□□ -2.42
UPF3AQ9H1J1 AL450471.1-201ENST00000447509 127 ntBASIC-0.08□□□□□ -2.42
UPF3AQ9H1J1 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.08□□□□□ -2.42
UPF3AQ9H1J1 MIR4773-1-201ENST00000637203 78 ntBASIC-0.08□□□□□ -2.42
UPF3AQ9H1J1 MIR655-201ENST00000362159 97 ntBASIC-0.09□□□□□ -2.42
UPF3AQ9H1J1 RNU6-208P-201ENST00000362431 107 ntBASIC-0.09□□□□□ -2.42
UPF3AQ9H1J1 SNORD115-37-201ENST00000363768 82 ntBASIC-0.09□□□□□ -2.42
UPF3AQ9H1J1 SNORD114-4-201ENST00000363962 75 ntBASIC-0.09□□□□□ -2.42
UPF3AQ9H1J1 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.09□□□□□ -2.42
UPF3AQ9H1J1 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.09□□□□□ -2.42
UPF3AQ9H1J1 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.09□□□□□ -2.42
UPF3AQ9H1J1 RNU6-478P-201ENST00000363904 110 ntBASIC-0.1□□□□□ -2.43
UPF3AQ9H1J1 RNU6-294P-201ENST00000364999 102 ntBASIC-0.1□□□□□ -2.43
UPF3AQ9H1J1 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.1□□□□□ -2.43
UPF3AQ9H1J1 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.1□□□□□ -2.43
UPF3AQ9H1J1 SNORD77.2-201ENST00000391045 68 ntBASIC-0.1□□□□□ -2.43
UPF3AQ9H1J1 AC244250.2-201ENST00000418731 148 ntBASIC-0.1□□□□□ -2.43
UPF3AQ9H1J1 snoU13.19-201ENST00000459148 104 ntBASIC-0.1□□□□□ -2.43
UPF3AQ9H1J1 AC006254.2-201ENST00000603259 279 ntBASIC-0.1□□□□□ -2.43
UPF3AQ9H1J1 RNU6-340P-201ENST00000364005 107 ntBASIC-0.11□□□□□ -2.43
UPF3AQ9H1J1 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.11□□□□□ -2.43
UPF3AQ9H1J1 RNU6-979P-201ENST00000383896 107 ntBASIC-0.11□□□□□ -2.43
UPF3AQ9H1J1 RNU6-592P-201ENST00000411333 103 ntBASIC-0.11□□□□□ -2.43
UPF3AQ9H1J1 Z95118.1-201ENST00000421372 247 ntBASIC-0.11□□□□□ -2.43
UPF3AQ9H1J1 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.11□□□□□ -2.43
UPF3AQ9H1J1 MIR5588-201ENST00000581890 63 ntBASIC-0.11□□□□□ -2.43
UPF3AQ9H1J1 MIR203A-201ENST00000384836 110 ntBASIC-0.12□□□□□ -2.43
UPF3AQ9H1J1 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.12□□□□□ -2.43
UPF3AQ9H1J1 RNA5SP170-201ENST00000517150 101 ntBASIC-0.12□□□□□ -2.43
UPF3AQ9H1J1 RNY1P1-201ENST00000364372 112 ntBASIC-0.13□□□□□ -2.43
UPF3AQ9H1J1 snoU13.13-201ENST00000458842 104 ntBASIC-0.13□□□□□ -2.43
UPF3AQ9H1J1 RNU6-557P-201ENST00000516842 110 ntBASIC-0.13□□□□□ -2.43
UPF3AQ9H1J1 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.13□□□□□ -2.43
UPF3AQ9H1J1 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.14□□□□□ -2.43
UPF3AQ9H1J1 SNORA32.1-201ENST00000364514 115 ntBASIC-0.14□□□□□ -2.43
UPF3AQ9H1J1 SNORA63.6-201ENST00000364921 119 ntBASIC-0.14□□□□□ -2.43
UPF3AQ9H1J1 RNU6-260P-201ENST00000384092 107 ntBASIC-0.14□□□□□ -2.43
UPF3AQ9H1J1 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.14□□□□□ -2.43
UPF3AQ9H1J1 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.14□□□□□ -2.43
UPF3AQ9H1J1 AP001180.6-201ENST00000584918 159 ntBASIC-0.14□□□□□ -2.43
UPF3AQ9H1J1 IGLL4P-201ENST00000614590 133 ntBASIC-0.14□□□□□ -2.43
UPF3AQ9H1J1 MIR6509-201ENST00000614603 85 ntBASIC-0.14□□□□□ -2.43
UPF3AQ9H1J1 MIR494-201ENST00000349529 81 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 SNORD115-25-201ENST00000362619 82 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 RNU6-46P-201ENST00000383860 107 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 MIR9-2-201ENST00000384838 87 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 AC022137.1-201ENST00000483735 151 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 RNU6-758P-201ENST00000516292 89 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 AP000676.1-201ENST00000533307 52 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 YWHAEP3-201ENST00000582767 121 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 MIR4493-201ENST00000584016 73 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 MIR3657-201ENST00000584818 117 ntBASIC-0.15□□□□□ -2.43
UPF3AQ9H1J1 RNU6-502P-201ENST00000362419 108 ntBASIC-0.16□□□□□ -2.44
UPF3AQ9H1J1 MIR214-201ENST00000385214 110 ntBASIC-0.16□□□□□ -2.44
UPF3AQ9H1J1 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.16□□□□□ -2.44
UPF3AQ9H1J1 RNU6-274P-201ENST00000459566 107 ntBASIC-0.16□□□□□ -2.44
UPF3AQ9H1J1 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 SNORD49B-201ENST00000365172 72 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 RNU6-337P-201ENST00000391243 106 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 RNA5SP25-201ENST00000410815 110 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 AL691482.2-201ENST00000457453 84 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 RNU7-171P-201ENST00000459581 62 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 AC104692.1-201ENST00000472406 90 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 AC021146.9-201ENST00000512503 156 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 RNA5SP147-201ENST00000516493 109 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 AC062037.1-201ENST00000605302 128 ntBASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.17□□□□□ -2.44
UPF3AQ9H1J1 RNU6-330P-201ENST00000363015 107 ntBASIC-0.18□□□□□ -2.44
UPF3AQ9H1J1 RNU6-686P-201ENST00000364839 107 ntBASIC-0.18□□□□□ -2.44
UPF3AQ9H1J1 RNU6-30P-201ENST00000384561 107 ntBASIC-0.18□□□□□ -2.44
UPF3AQ9H1J1 MIR450A2-201ENST00000385022 100 ntBASIC-0.18□□□□□ -2.44
UPF3AQ9H1J1 RNU6-129P-201ENST00000391022 107 ntBASIC-0.18□□□□□ -2.44
UPF3AQ9H1J1 AC090617.8-201ENST00000623339 167 ntBASIC-0.18□□□□□ -2.44
UPF3AQ9H1J1 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.18□□□□□ -2.44
UPF3AQ9H1J1 SNORA2.1-201ENST00000363089 137 ntBASIC-0.19□□□□□ -2.44
UPF3AQ9H1J1 RNA5SP368-201ENST00000364298 116 ntBASIC-0.19□□□□□ -2.44
UPF3AQ9H1J1 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.19□□□□□ -2.44
UPF3AQ9H1J1 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.19□□□□□ -2.44
UPF3AQ9H1J1 RNU6-455P-201ENST00000384681 107 ntBASIC-0.19□□□□□ -2.44
UPF3AQ9H1J1 MIR6773-201ENST00000612812 74 ntBASIC-0.19□□□□□ -2.44
UPF3AQ9H1J1 AL627230.5-201ENST00000619807 58 ntBASIC-0.19□□□□□ -2.44
UPF3AQ9H1J1 SNORA18.1-201ENST00000363418 128 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 RNU6-787P-201ENST00000384032 107 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 MIR604-201ENST00000384880 94 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 AC074348.1-201ENST00000426503 132 ntBASIC-0.2□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 175.7 ms