Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.14□□□□□ -2.39
SOX2P48431 RNA5SP299-201ENST00000391203 116 ntBASIC0.14□□□□□ -2.39
SOX2P48431 RNU6-340P-201ENST00000364005 107 ntBASIC0.13□□□□□ -2.39
SOX2P48431 RNU6-686P-201ENST00000364839 107 ntBASIC0.13□□□□□ -2.39
SOX2P48431 RNY4P29-201ENST00000410801 97 ntBASIC0.13□□□□□ -2.39
SOX2P48431 AC244090.1-201ENST00000441884 93 ntBASIC0.13□□□□□ -2.39
SOX2P48431 MIR4743-201ENST00000584576 69 ntBASIC0.13□□□□□ -2.39
SOX2P48431 RNU6-1152P-201ENST00000384576 107 ntBASIC0.12□□□□□ -2.39
SOX2P48431 MIR1295A-201ENST00000408463 79 ntBASIC0.12□□□□□ -2.39
SOX2P48431 MIR1302-4-201ENST00000408701 150 ntBASIC0.12□□□□□ -2.39
SOX2P48431 RNU6-380P-201ENST00000410207 107 ntBASIC0.12□□□□□ -2.39
SOX2P48431 MIR4768-201ENST00000585270 74 ntBASIC0.12□□□□□ -2.39
SOX2P48431 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.12□□□□□ -2.39
SOX2P48431 MIR4679-1-201ENST00000637619 75 ntBASIC0.12□□□□□ -2.39
SOX2P48431 MIR371B-201ENST00000638082 66 ntBASIC0.12□□□□□ -2.39
SOX2P48431 RNU6-478P-201ENST00000363904 110 ntBASIC0.11□□□□□ -2.39
SOX2P48431 SNORD114-9-201ENST00000364370 72 ntBASIC0.11□□□□□ -2.39
SOX2P48431 Y_RNA.316-201ENST00000365118 111 ntBASIC0.11□□□□□ -2.39
SOX2P48431 MIR329-2-201ENST00000385029 84 ntBASIC0.11□□□□□ -2.39
SOX2P48431 AL691482.2-201ENST00000457453 84 ntBASIC0.11□□□□□ -2.39
SOX2P48431 MIR593-201ENST00000384856 100 ntBASIC0.1□□□□□ -2.39
SOX2P48431 MIR548H2-201ENST00000408874 88 ntBASIC0.1□□□□□ -2.39
SOX2P48431 RNU6-752P-201ENST00000516376 102 ntBASIC0.1□□□□□ -2.39
SOX2P48431 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.1□□□□□ -2.39
SOX2P48431 RN7SL660P-201ENST00000614852 299 ntBASIC0.1□□□□□ -2.39
SOX2P48431 MIRLET7A1-201ENST00000362295 80 ntBASIC0.09□□□□□ -2.4
SOX2P48431 RNU6-1039P-201ENST00000383931 107 ntBASIC0.09□□□□□ -2.4
SOX2P48431 RNU6-35P-201ENST00000384530 107 ntBASIC0.09□□□□□ -2.4
SOX2P48431 RNA5SP163-201ENST00000410304 99 ntBASIC0.09□□□□□ -2.4
SOX2P48431 MIR6509-201ENST00000614603 85 ntBASIC0.09□□□□□ -2.4
SOX2P48431 RNU6-315P-201ENST00000362666 107 ntBASIC0.08□□□□□ -2.4
SOX2P48431 MIR145-201ENST00000384967 88 ntBASIC0.08□□□□□ -2.4
SOX2P48431 SNORD2-201ENST00000459163 69 ntBASIC0.08□□□□□ -2.4
SOX2P48431 RNU6-303P-201ENST00000517091 106 ntBASIC0.08□□□□□ -2.4
SOX2P48431 MIR4666B-201ENST00000578142 81 ntBASIC0.08□□□□□ -2.4
SOX2P48431 MIR6514-201ENST00000622549 70 ntBASIC0.08□□□□□ -2.4
SOX2P48431 SNORD114-5-201ENST00000362928 70 ntBASIC0.07□□□□□ -2.4
SOX2P48431 Y_RNA.388-201ENST00000383919 113 ntBASIC0.07□□□□□ -2.4
SOX2P48431 RNU6-260P-201ENST00000384092 107 ntBASIC0.07□□□□□ -2.4
SOX2P48431 MIR548E-201ENST00000408287 88 ntBASIC0.07□□□□□ -2.4
SOX2P48431 RNU6-180P-201ENST00000516697 61 ntBASIC0.07□□□□□ -2.4
SOX2P48431 RNU6-175P-201ENST00000516896 107 ntBASIC0.07□□□□□ -2.4
SOX2P48431 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.07□□□□□ -2.4
SOX2P48431 MIR2909-201ENST00000617113 69 ntBASIC0.07□□□□□ -2.4
SOX2P48431 MIR1245B-201ENST00000636115 69 ntBASIC0.07□□□□□ -2.4
SOX2P48431 RNU6-990P-201ENST00000364385 104 ntBASIC0.06□□□□□ -2.4
SOX2P48431 MIR582-201ENST00000365731 98 ntBASIC0.06□□□□□ -2.4
SOX2P48431 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.06□□□□□ -2.4
SOX2P48431 RNU7-159P-201ENST00000459284 62 ntBASIC0.06□□□□□ -2.4
SOX2P48431 CR383656.4-201ENST00000546909 122 ntBASIC0.06□□□□□ -2.4
SOX2P48431 Y_RNA.185-201ENST00000363894 100 ntBASIC0.05□□□□□ -2.4
SOX2P48431 RNA5SP173-201ENST00000364857 136 ntBASIC0.05□□□□□ -2.4
SOX2P48431 MIR106A-201ENST00000384870 81 ntBASIC0.05□□□□□ -2.4
SOX2P48431 RNU6-807P-201ENST00000516805 107 ntBASIC0.05□□□□□ -2.4
SOX2P48431 MIR5190-201ENST00000581537 80 ntBASIC0.05□□□□□ -2.4
SOX2P48431 RNU6-1094P-201ENST00000362416 104 ntBASIC0.04□□□□□ -2.4
SOX2P48431 SNORA63.6-201ENST00000364921 119 ntBASIC0.04□□□□□ -2.4
SOX2P48431 RNU6-1036P-201ENST00000383959 104 ntBASIC0.04□□□□□ -2.4
SOX2P48431 MIR203A-201ENST00000384836 110 ntBASIC0.04□□□□□ -2.4
SOX2P48431 MIR1265-201ENST00000408444 86 ntBASIC0.04□□□□□ -2.4
SOX2P48431 MIR4712-201ENST00000583750 82 ntBASIC0.04□□□□□ -2.4
SOX2P48431 MIR3202-2-201ENST00000635980 79 ntBASIC0.04□□□□□ -2.4
SOX2P48431 MIR1297-201ENST00000637311 77 ntBASIC0.04□□□□□ -2.4
SOX2P48431 MIR6086-201ENST00000638065 55 ntBASIC0.04□□□□□ -2.4
SOX2P48431 MIR148A-201ENST00000362215 68 ntBASIC0.03□□□□□ -2.4
SOX2P48431 RNU7-165P-201ENST00000458864 60 ntBASIC0.03□□□□□ -2.4
SOX2P48431 MIR3657-201ENST00000584818 117 ntBASIC0.03□□□□□ -2.4
SOX2P48431 MIR6718-201ENST00000616153 80 ntBASIC0.03□□□□□ -2.4
SOX2P48431 SNORD114-16-201ENST00000363044 70 ntBASIC0.02□□□□□ -2.41
SOX2P48431 SNORA2.1-201ENST00000363089 137 ntBASIC0.02□□□□□ -2.41
SOX2P48431 RNA5SP98-201ENST00000363158 137 ntBASIC0.02□□□□□ -2.41
SOX2P48431 AC021146.9-201ENST00000512503 156 ntBASIC0.02□□□□□ -2.41
SOX2P48431 Y_RNA.219-201ENST00000364232 113 ntBASIC0.01□□□□□ -2.41
SOX2P48431 Y_RNA.313-201ENST00000365095 103 ntBASIC0.01□□□□□ -2.41
SOX2P48431 RNU6-302P-201ENST00000365249 107 ntBASIC0.01□□□□□ -2.41
SOX2P48431 RNU6-573P-201ENST00000383938 106 ntBASIC0.01□□□□□ -2.41
SOX2P48431 RNU6-787P-201ENST00000384032 107 ntBASIC0.01□□□□□ -2.41
SOX2P48431 AC074348.1-201ENST00000426503 132 ntBASIC0.01□□□□□ -2.41
SOX2P48431 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.01□□□□□ -2.41
SOX2P48431 MIR6759-201ENST00000638110 65 ntBASIC0.01□□□□□ -2.41
SOX2P48431 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0□□□□□ -2.41
SOX2P48431 Y_RNA.250-201ENST00000364542 110 ntBASIC0□□□□□ -2.41
SOX2P48431 MIR4667-201ENST00000578933 66 ntBASIC0□□□□□ -2.41
SOX2P48431 MIR4290-201ENST00000583807 95 ntBASIC0□□□□□ -2.41
SOX2P48431 RNA5SP147-201ENST00000516493 109 ntBASIC-0.01□□□□□ -2.41
SOX2P48431 MIR5589-201ENST00000579442 60 ntBASIC-0.01□□□□□ -2.41
SOX2P48431 MIR4484-201ENST00000582855 83 ntBASIC-0.01□□□□□ -2.41
SOX2P48431 SNORA8.1-201ENST00000384250 140 ntBASIC-0.02□□□□□ -2.41
SOX2P48431 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.02□□□□□ -2.41
SOX2P48431 IGLVI-20-201ENST00000519296 130 ntBASIC-0.02□□□□□ -2.41
SOX2P48431 MIR3675-201ENST00000583661 73 ntBASIC-0.02□□□□□ -2.41
SOX2P48431 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.03□□□□□ -2.41
SOX2P48431 RNU6-1124P-201ENST00000384169 107 ntBASIC-0.03□□□□□ -2.41
SOX2P48431 RNU6-929P-201ENST00000384429 107 ntBASIC-0.03□□□□□ -2.41
SOX2P48431 SNORA49-201ENST00000386157 136 ntBASIC-0.03□□□□□ -2.41
SOX2P48431 snoU13.13-201ENST00000458842 104 ntBASIC-0.03□□□□□ -2.41
SOX2P48431 HAR1A.1-201ENST00000459583 118 ntBASIC-0.03□□□□□ -2.41
SOX2P48431 AC104692.1-201ENST00000472406 90 ntBASIC-0.03□□□□□ -2.41
SOX2P48431 SNORA40.17-201ENST00000517256 115 ntBASIC-0.03□□□□□ -2.41
SOX2P48431 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 200 ms