Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Y_RNA.402-201ENST00000383972 102 ntBASIC-3.41□□□□□ -2.96
CUX1P39880 Y_RNA.485-201ENST00000384395 102 ntBASIC-3.41□□□□□ -2.96
CUX1P39880 RNU4-14P-201ENST00000410858 122 ntBASIC-3.41□□□□□ -2.96
CUX1P39880 RNU7-174P-201ENST00000516248 59 ntBASIC-3.41□□□□□ -2.96
CUX1P39880 MIR202-201ENST00000362219 110 ntBASIC-3.42□□□□□ -2.96
CUX1P39880 Y_RNA.695-201ENST00000516715 107 ntBASIC-3.42□□□□□ -2.96
CUX1P39880 SNORD116.3-201ENST00000517176 78 ntBASIC-3.42□□□□□ -2.96
CUX1P39880 MIR3144-201ENST00000579460 79 ntBASIC-3.42□□□□□ -2.96
CUX1P39880 U6.81-201ENST00000612550 106 ntBASIC-3.42□□□□□ -2.96
CUX1P39880 Y_RNA.275-201ENST00000364726 110 ntBASIC-3.43□□□□□ -2.96
CUX1P39880 RNU6-1042P-201ENST00000384204 107 ntBASIC-3.43□□□□□ -2.96
CUX1P39880 RNU6-1009P-201ENST00000390996 107 ntBASIC-3.43□□□□□ -2.96
CUX1P39880 RNU6-644P-201ENST00000391155 98 ntBASIC-3.43□□□□□ -2.96
CUX1P39880 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC-3.43□□□□□ -2.96
CUX1P39880 RNU6-523P-201ENST00000516304 54 ntBASIC-3.43□□□□□ -2.96
CUX1P39880 RNU7-151P-201ENST00000516930 53 ntBASIC-3.43□□□□□ -2.96
CUX1P39880 Y_RNA.198-201ENST00000364013 98 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 RNU6-816P-201ENST00000390914 107 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 RNU6-1268P-201ENST00000391214 107 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 RNU6-1239P-201ENST00000391310 107 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 MIR548AJ2-201ENST00000408539 92 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-3.44□□□□□ -2.96
CUX1P39880 SNORD2.1-201ENST00000458762 69 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 RNU6-956P-201ENST00000458868 103 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 RNU6-752P-201ENST00000516376 102 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 RNU5F-1-201ENST00000362507 117 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 Y_RNA.237-201ENST00000364439 102 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 SNORD116-1-201ENST00000384335 95 ntBASIC-3.44□□□□□ -2.96
CUX1P39880 Y_RNA.401-201ENST00000383965 117 ntBASIC-3.45□□□□□ -2.96
CUX1P39880 SNORD58B-201ENST00000607313 66 ntBASIC-3.45□□□□□ -2.96
CUX1P39880 AL359920.1-201ENST00000618332 176 ntBASIC-3.45□□□□□ -2.96
CUX1P39880 RNU6-649P-201ENST00000384463 107 ntBASIC-3.46□□□□□ -2.96
CUX1P39880 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-3.46□□□□□ -2.96
CUX1P39880 MIR379-201ENST00000362218 67 ntBASIC-3.47□□□□□ -2.96
CUX1P39880 SNORD116-2-201ENST00000384274 95 ntBASIC-3.47□□□□□ -2.96
CUX1P39880 RNU6-1113P-201ENST00000384348 107 ntBASIC-3.47□□□□□ -2.96
CUX1P39880 RNU6-68P-201ENST00000516576 104 ntBASIC-3.47□□□□□ -2.96
CUX1P39880 AL603755.1-201ENST00000619504 163 ntBASIC-3.47□□□□□ -2.96
CUX1P39880 AC090574.1-201ENST00000623186 233 ntBASIC-3.47□□□□□ -2.96
CUX1P39880 RNU6-681P-201ENST00000364012 104 ntBASIC-3.48□□□□□ -2.97
CUX1P39880 Y_RNA.213-201ENST00000364178 111 ntBASIC-3.48□□□□□ -2.97
CUX1P39880 RNU6-768P-201ENST00000384683 107 ntBASIC-3.48□□□□□ -2.97
CUX1P39880 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-3.48□□□□□ -2.97
CUX1P39880 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-3.48□□□□□ -2.97
CUX1P39880 Z99129.1-201ENST00000612510 255 ntBASIC-3.48□□□□□ -2.97
CUX1P39880 AC104985.2-201ENST00000620598 500 ntBASIC-3.48□□□□□ -2.97
CUX1P39880 Y_RNA.307-201ENST00000365022 117 ntBASIC-3.49□□□□□ -2.97
CUX1P39880 RNU6-520P-201ENST00000384717 104 ntBASIC-3.49□□□□□ -2.97
CUX1P39880 MIR548D2-201ENST00000384955 97 ntBASIC-3.49□□□□□ -2.97
CUX1P39880 MIR579-201ENST00000385221 98 ntBASIC-3.49□□□□□ -2.97
CUX1P39880 SNORA17.4-201ENST00000391287 132 ntBASIC-3.49□□□□□ -2.97
CUX1P39880 Y_RNA.797-201ENST00000515977 94 ntBASIC-3.49□□□□□ -2.97
CUX1P39880 U4.4-201ENST00000620626 117 ntBASIC-3.49□□□□□ -2.97
CUX1P39880 Y_RNA.604-201ENST00000410574 102 ntBASIC-3.5□□□□□ -2.97
CUX1P39880 MIR7978-201ENST00000636158 59 ntBASIC-3.5□□□□□ -2.97
CUX1P39880 Y_RNA.47-201ENST00000362697 108 ntBASIC-3.51□□□□□ -2.97
CUX1P39880 Y_RNA.279-201ENST00000364763 95 ntBASIC-3.51□□□□□ -2.97
CUX1P39880 RNU6-867P-201ENST00000364956 107 ntBASIC-3.51□□□□□ -2.97
CUX1P39880 RNU6-584P-201ENST00000410350 95 ntBASIC-3.51□□□□□ -2.97
CUX1P39880 Y_RNA.663-201ENST00000516043 101 ntBASIC-3.51□□□□□ -2.97
CUX1P39880 MIR4439-201ENST00000583746 80 ntBASIC-3.51□□□□□ -2.97
CUX1P39880 SNORD115-37-201ENST00000363768 82 ntBASIC-3.52□□□□□ -2.97
CUX1P39880 Y_RNA.262-201ENST00000364641 102 ntBASIC-3.52□□□□□ -2.97
CUX1P39880 Y_RNA.359-201ENST00000365498 102 ntBASIC-3.52□□□□□ -2.97
CUX1P39880 AC109635.3-201ENST00000529536 185 ntBASIC-3.53□□□□□ -2.97
CUX1P39880 MIR6844-201ENST00000637122 62 ntBASIC-3.53□□□□□ -2.97
CUX1P39880 RNU6-668P-201ENST00000364180 107 ntBASIC-3.54□□□□□ -2.98
CUX1P39880 MIR577-201ENST00000385196 96 ntBASIC-3.54□□□□□ -2.98
CUX1P39880 MIR620-201ENST00000385232 95 ntBASIC-3.54□□□□□ -2.98
CUX1P39880 DEFB108C-201ENST00000400154 252 ntBASIC-3.54□□□□□ -2.98
CUX1P39880 RNU6-121P-201ENST00000410525 99 ntBASIC-3.54□□□□□ -2.98
CUX1P39880 Y_RNA.668-201ENST00000516233 93 ntBASIC-3.54□□□□□ -2.98
CUX1P39880 Y_RNA.281-201ENST00000364774 94 ntBASIC-3.54□□□□□ -2.98
CUX1P39880 SNORA63.7-201ENST00000365579 123 ntBASIC-3.54□□□□□ -2.98
CUX1P39880 Y_RNA.496-201ENST00000384444 101 ntBASIC-3.54□□□□□ -2.98
CUX1P39880 Y_RNA.44-201ENST00000362676 108 ntBASIC-3.55□□□□□ -2.98
CUX1P39880 SNORD1B-201ENST00000363091 84 ntBASIC-3.55□□□□□ -2.98
CUX1P39880 Y_RNA.154-201ENST00000363624 102 ntBASIC-3.55□□□□□ -2.98
CUX1P39880 SNORD113-2-201ENST00000391082 72 ntBASIC-3.55□□□□□ -2.98
CUX1P39880 MIR4282-201ENST00000583613 67 ntBASIC-3.55□□□□□ -2.98
CUX1P39880 MIR3149-201ENST00000584629 83 ntBASIC-3.55□□□□□ -2.98
CUX1P39880 RNU6-698P-201ENST00000363523 107 ntBASIC-3.56□□□□□ -2.98
CUX1P39880 RNU6-34P-201ENST00000364874 107 ntBASIC-3.56□□□□□ -2.98
CUX1P39880 RNA5SP136-201ENST00000410906 107 ntBASIC-3.56□□□□□ -2.98
CUX1P39880 RNU6-345P-201ENST00000517001 107 ntBASIC-3.56□□□□□ -2.98
CUX1P39880 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-3.56□□□□□ -2.98
CUX1P39880 RNY4P14-201ENST00000363656 96 ntBASIC-3.57□□□□□ -2.98
CUX1P39880 RNU6-361P-201ENST00000364454 107 ntBASIC-3.57□□□□□ -2.98
CUX1P39880 Y_RNA.520-201ENST00000384556 102 ntBASIC-3.57□□□□□ -2.98
CUX1P39880 SNORA75.5-201ENST00000391291 81 ntBASIC-3.57□□□□□ -2.98
CUX1P39880 Y_RNA.635-201ENST00000459041 101 ntBASIC-3.57□□□□□ -2.98
CUX1P39880 Y_RNA.16-201ENST00000362421 102 ntBASIC-3.58□□□□□ -2.98
CUX1P39880 Y_RNA.321-201ENST00000365149 102 ntBASIC-3.58□□□□□ -2.98
CUX1P39880 SNORD116-16-201ENST00000384533 92 ntBASIC-3.58□□□□□ -2.98
CUX1P39880 MIR3121-201ENST00000579680 77 ntBASIC-3.58□□□□□ -2.98
CUX1P39880 AC002553.4-201ENST00000616896 331 ntBASIC-3.58□□□□□ -2.98
CUX1P39880 RNU6-1047P-201ENST00000364418 107 ntBASIC-3.59□□□□□ -2.98
CUX1P39880 RNU6-737P-201ENST00000365370 107 ntBASIC-3.59□□□□□ -2.98
CUX1P39880 MIR125B1-201ENST00000385236 88 ntBASIC-3.59□□□□□ -2.98
CUX1P39880 RNU6-1338P-201ENST00000516328 91 ntBASIC-3.59□□□□□ -2.98
Retrieved 100 of 98,524 protein–RNA pairs in 170.3 ms