Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNU6-382P-201ENST00000365181 106 ntBASIC-0.32□□□□□ -2.46
SHMT1P34896 MIR488-201ENST00000365739 83 ntBASIC-0.32□□□□□ -2.46
SHMT1P34896 AP000676.1-201ENST00000533307 52 ntBASIC-0.32□□□□□ -2.46
SHMT1P34896 SNORD115-25-201ENST00000362619 82 ntBASIC-0.33□□□□□ -2.46
SHMT1P34896 RNU6-824P-201ENST00000363724 104 ntBASIC-0.33□□□□□ -2.46
SHMT1P34896 RNU6-455P-201ENST00000384681 107 ntBASIC-0.33□□□□□ -2.46
SHMT1P34896 AL450471.1-201ENST00000447509 127 ntBASIC-0.33□□□□□ -2.46
SHMT1P34896 RNA5SP476-201ENST00000516613 103 ntBASIC-0.33□□□□□ -2.46
SHMT1P34896 MIR4645-201ENST00000583158 77 ntBASIC-0.33□□□□□ -2.46
SHMT1P34896 MIR4773-1-201ENST00000637203 78 ntBASIC-0.33□□□□□ -2.46
SHMT1P34896 SNORA63.6-201ENST00000364921 119 ntBASIC-0.34□□□□□ -2.46
SHMT1P34896 MIR9-2-201ENST00000384838 87 ntBASIC-0.34□□□□□ -2.46
SHMT1P34896 RNA5SP89-201ENST00000410300 108 ntBASIC-0.34□□□□□ -2.46
SHMT1P34896 AC093729.1-201ENST00000513074 128 ntBASIC-0.34□□□□□ -2.46
SHMT1P34896 RNU6-402P-201ENST00000410678 103 ntBASIC-0.35□□□□□ -2.47
SHMT1P34896 RNU6-592P-201ENST00000411333 103 ntBASIC-0.35□□□□□ -2.47
SHMT1P34896 RNU6-274P-201ENST00000459566 107 ntBASIC-0.35□□□□□ -2.47
SHMT1P34896 RNU6-320P-201ENST00000516511 106 ntBASIC-0.35□□□□□ -2.47
SHMT1P34896 AP001180.6-201ENST00000584918 159 ntBASIC-0.35□□□□□ -2.47
SHMT1P34896 U6.81-201ENST00000612550 106 ntBASIC-0.35□□□□□ -2.47
SHMT1P34896 RNU6-208P-201ENST00000362431 107 ntBASIC-0.36□□□□□ -2.47
SHMT1P34896 RNU6-153P-201ENST00000364422 104 ntBASIC-0.36□□□□□ -2.47
SHMT1P34896 RNU6-219P-201ENST00000364728 107 ntBASIC-0.36□□□□□ -2.47
SHMT1P34896 RNU6-900P-201ENST00000384498 102 ntBASIC-0.36□□□□□ -2.47
SHMT1P34896 Z95118.1-201ENST00000421372 247 ntBASIC-0.36□□□□□ -2.47
SHMT1P34896 SNORD114-11-201ENST00000363738 75 ntBASIC-0.37□□□□□ -2.47
SHMT1P34896 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.37□□□□□ -2.47
SHMT1P34896 RNU6-260P-201ENST00000384092 107 ntBASIC-0.37□□□□□ -2.47
SHMT1P34896 SNORD77.2-201ENST00000391045 68 ntBASIC-0.37□□□□□ -2.47
SHMT1P34896 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.37□□□□□ -2.47
SHMT1P34896 SNORA40.17-201ENST00000517256 115 ntBASIC-0.37□□□□□ -2.47
SHMT1P34896 RNU6-990P-201ENST00000364385 104 ntBASIC-0.38□□□□□ -2.47
SHMT1P34896 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.38□□□□□ -2.47
SHMT1P34896 RNY1P7-201ENST00000384743 110 ntBASIC-0.38□□□□□ -2.47
SHMT1P34896 AL691482.2-201ENST00000457453 84 ntBASIC-0.38□□□□□ -2.47
SHMT1P34896 HAR1A.1-201ENST00000459583 118 ntBASIC-0.38□□□□□ -2.47
SHMT1P34896 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.38□□□□□ -2.47
SHMT1P34896 MIR6509-201ENST00000614603 85 ntBASIC-0.38□□□□□ -2.47
SHMT1P34896 MIR4788-201ENST00000639104 80 ntBASIC-0.38□□□□□ -2.47
SHMT1P34896 SNORD114-28-201ENST00000363610 72 ntBASIC-0.39□□□□□ -2.47
SHMT1P34896 RNU6-681P-201ENST00000364012 104 ntBASIC-0.39□□□□□ -2.47
SHMT1P34896 SNORD56B-201ENST00000384713 71 ntBASIC-0.39□□□□□ -2.47
SHMT1P34896 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.39□□□□□ -2.47
SHMT1P34896 RNU6-844P-201ENST00000517175 102 ntBASIC-0.39□□□□□ -2.47
SHMT1P34896 MIR4493-201ENST00000584016 73 ntBASIC-0.39□□□□□ -2.47
SHMT1P34896 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.4□□□□□ -2.47
SHMT1P34896 AC021146.9-201ENST00000512503 156 ntBASIC-0.4□□□□□ -2.47
SHMT1P34896 MIR8064-201ENST00000612863 90 ntBASIC-0.4□□□□□ -2.47
SHMT1P34896 RNU6-624P-201ENST00000363411 107 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 RNA5SP275-201ENST00000363936 118 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 RNU6-497P-201ENST00000365316 104 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 SNORD14C-201ENST00000365382 88 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 MIR196A2-201ENST00000385189 110 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 RNU7-55P-201ENST00000459426 62 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 SNORD126-201ENST00000459475 77 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 RNU6-752P-201ENST00000516376 102 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 RNU6-267P-201ENST00000516714 103 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 MIR548BB-201ENST00000626714 66 ntBASIC-0.41□□□□□ -2.48
SHMT1P34896 RNU6-502P-201ENST00000362419 108 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 RNU6-675P-201ENST00000384236 104 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 AC096531.1-201ENST00000419107 107 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 RNU6-758P-201ENST00000516292 89 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 AC140658.3-201ENST00000567603 271 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 MIR4280-201ENST00000582178 76 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 YWHAEP3-201ENST00000582767 121 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.42□□□□□ -2.48
SHMT1P34896 RNU6-340P-201ENST00000364005 107 ntBASIC-0.43□□□□□ -2.48
SHMT1P34896 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.43□□□□□ -2.48
SHMT1P34896 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.43□□□□□ -2.48
SHMT1P34896 RNU6-901P-201ENST00000384593 106 ntBASIC-0.43□□□□□ -2.48
SHMT1P34896 RNA5SP169-201ENST00000517268 117 ntBASIC-0.43□□□□□ -2.48
SHMT1P34896 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.43□□□□□ -2.48
SHMT1P34896 SNORA2.1-201ENST00000363089 137 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 RNA5SP66-201ENST00000517178 101 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 MIR4432-201ENST00000581823 84 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 MIR3657-201ENST00000584818 117 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 MIR6773-201ENST00000612812 74 ntBASIC-0.44□□□□□ -2.48
SHMT1P34896 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.45□□□□□ -2.48
SHMT1P34896 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.45□□□□□ -2.48
SHMT1P34896 MIR203A-201ENST00000384836 110 ntBASIC-0.45□□□□□ -2.48
SHMT1P34896 RNY4P30-201ENST00000410216 95 ntBASIC-0.45□□□□□ -2.48
SHMT1P34896 snoU13.13-201ENST00000458842 104 ntBASIC-0.45□□□□□ -2.48
SHMT1P34896 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.45□□□□□ -2.48
SHMT1P34896 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.45□□□□□ -2.48
SHMT1P34896 MIR101-1-201ENST00000362265 75 ntBASIC-0.46□□□□□ -2.48
SHMT1P34896 MIR604-201ENST00000384880 94 ntBASIC-0.46□□□□□ -2.48
SHMT1P34896 RNA5SP25-201ENST00000410815 110 ntBASIC-0.46□□□□□ -2.48
SHMT1P34896 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.46□□□□□ -2.48
SHMT1P34896 RNU6-557P-201ENST00000516842 110 ntBASIC-0.46□□□□□ -2.48
SHMT1P34896 RNU6-973P-201ENST00000364690 107 ntBASIC-0.47□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 266.2 ms