Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 Y_RNA.426-201ENST00000384068 113 ntBASIC0.13□□□□□ -2.39
SMARCA1P28370 MIR610-201ENST00000385139 96 ntBASIC0.13□□□□□ -2.39
SMARCA1P28370 SNORA75.1-201ENST00000391130 148 ntBASIC0.13□□□□□ -2.39
SMARCA1P28370 AC006254.2-201ENST00000603259 279 ntBASIC0.13□□□□□ -2.39
SMARCA1P28370 U6.81-201ENST00000612550 106 ntBASIC0.13□□□□□ -2.39
SMARCA1P28370 AL627230.5-201ENST00000619807 58 ntBASIC0.13□□□□□ -2.39
SMARCA1P28370 SNORD114-29-201ENST00000364819 70 ntBASIC0.12□□□□□ -2.39
SMARCA1P28370 RNU6-820P-201ENST00000384273 107 ntBASIC0.12□□□□□ -2.39
SMARCA1P28370 MIR593-201ENST00000384856 100 ntBASIC0.12□□□□□ -2.39
SMARCA1P28370 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.12□□□□□ -2.39
SMARCA1P28370 RNU6-175P-201ENST00000516896 107 ntBASIC0.12□□□□□ -2.39
SMARCA1P28370 RNU6-478P-201ENST00000363904 110 ntBASIC0.11□□□□□ -2.39
SMARCA1P28370 MIR582-201ENST00000365731 98 ntBASIC0.11□□□□□ -2.39
SMARCA1P28370 MIR145-201ENST00000384967 88 ntBASIC0.11□□□□□ -2.39
SMARCA1P28370 Y_RNA.606-201ENST00000410579 103 ntBASIC0.11□□□□□ -2.39
SMARCA1P28370 RNU6-592P-201ENST00000411333 103 ntBASIC0.11□□□□□ -2.39
SMARCA1P28370 RNU7-171P-201ENST00000459581 62 ntBASIC0.11□□□□□ -2.39
SMARCA1P28370 MIR20A-201ENST00000362279 71 ntBASIC0.1□□□□□ -2.39
SMARCA1P28370 RNA5SP368-201ENST00000364298 116 ntBASIC0.1□□□□□ -2.39
SMARCA1P28370 Y_RNA.264-201ENST00000364665 102 ntBASIC0.1□□□□□ -2.39
SMARCA1P28370 Y_RNA.371-201ENST00000365591 113 ntBASIC0.1□□□□□ -2.39
SMARCA1P28370 Y_RNA.607-201ENST00000410597 98 ntBASIC0.1□□□□□ -2.39
SMARCA1P28370 RNU6-557P-201ENST00000516842 110 ntBASIC0.1□□□□□ -2.39
SMARCA1P28370 Y_RNA.12-201ENST00000362393 112 ntBASIC0.09□□□□□ -2.4
SMARCA1P28370 RNU6-340P-201ENST00000364005 107 ntBASIC0.09□□□□□ -2.4
SMARCA1P28370 RNU6-302P-201ENST00000365249 107 ntBASIC0.09□□□□□ -2.4
SMARCA1P28370 RNU6-129P-201ENST00000391022 107 ntBASIC0.09□□□□□ -2.4
SMARCA1P28370 Y_RNA.660-201ENST00000516002 120 ntBASIC0.09□□□□□ -2.4
SMARCA1P28370 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.09□□□□□ -2.4
SMARCA1P28370 SNORD114-5-201ENST00000362928 70 ntBASIC0.08□□□□□ -2.4
SMARCA1P28370 SNORD114-31-201ENST00000363219 75 ntBASIC0.08□□□□□ -2.4
SMARCA1P28370 RNU6-990P-201ENST00000364385 104 ntBASIC0.08□□□□□ -2.4
SMARCA1P28370 MIR892B-201ENST00000401279 77 ntBASIC0.08□□□□□ -2.4
SMARCA1P28370 RNA5SP163-201ENST00000410304 99 ntBASIC0.08□□□□□ -2.4
SMARCA1P28370 AC244090.1-201ENST00000441884 93 ntBASIC0.08□□□□□ -2.4
SMARCA1P28370 YWHAEP3-201ENST00000582767 121 ntBASIC0.08□□□□□ -2.4
SMARCA1P28370 MIR4743-201ENST00000584576 69 ntBASIC0.08□□□□□ -2.4
SMARCA1P28370 RNU6-1276P-201ENST00000365372 104 ntBASIC0.07□□□□□ -2.4
SMARCA1P28370 RNU6-180P-201ENST00000516697 61 ntBASIC0.07□□□□□ -2.4
SMARCA1P28370 SNORD114-16-201ENST00000363044 70 ntBASIC0.06□□□□□ -2.4
SMARCA1P28370 RNU6-686P-201ENST00000364839 107 ntBASIC0.06□□□□□ -2.4
SMARCA1P28370 RNU6-242P-201ENST00000384359 107 ntBASIC0.06□□□□□ -2.4
SMARCA1P28370 MIR548E-201ENST00000408287 88 ntBASIC0.06□□□□□ -2.4
SMARCA1P28370 Z95118.1-201ENST00000421372 247 ntBASIC0.06□□□□□ -2.4
SMARCA1P28370 MIRLET7A1-201ENST00000362295 80 ntBASIC0.05□□□□□ -2.4
SMARCA1P28370 Y_RNA.316-201ENST00000365118 111 ntBASIC0.05□□□□□ -2.4
SMARCA1P28370 RNU6-1039P-201ENST00000383931 107 ntBASIC0.05□□□□□ -2.4
SMARCA1P28370 RNU6-1152P-201ENST00000384576 107 ntBASIC0.05□□□□□ -2.4
SMARCA1P28370 RNU6-758P-201ENST00000516292 89 ntBASIC0.05□□□□□ -2.4
SMARCA1P28370 MIR6514-201ENST00000622549 70 ntBASIC0.05□□□□□ -2.4
SMARCA1P28370 MIR4679-1-201ENST00000637619 75 ntBASIC0.05□□□□□ -2.4
SMARCA1P28370 RNU7-165P-201ENST00000458864 60 ntBASIC0.04□□□□□ -2.4
SMARCA1P28370 RNU6-274P-201ENST00000459566 107 ntBASIC0.04□□□□□ -2.4
SMARCA1P28370 SNORA40.17-201ENST00000517256 115 ntBASIC0.04□□□□□ -2.4
SMARCA1P28370 IGLVI-20-201ENST00000519296 130 ntBASIC0.04□□□□□ -2.4
SMARCA1P28370 MIR106A-201ENST00000384870 81 ntBASIC0.03□□□□□ -2.4
SMARCA1P28370 RNY4P29-201ENST00000410801 97 ntBASIC0.03□□□□□ -2.4
SMARCA1P28370 AL691482.2-201ENST00000457453 84 ntBASIC0.03□□□□□ -2.4
SMARCA1P28370 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
SMARCA1P28370 MIR6509-201ENST00000614603 85 ntBASIC0.03□□□□□ -2.4
SMARCA1P28370 Y_RNA.388-201ENST00000383919 113 ntBASIC0.02□□□□□ -2.41
SMARCA1P28370 RNU6-1036P-201ENST00000383959 104 ntBASIC0.02□□□□□ -2.41
SMARCA1P28370 RNU6-260P-201ENST00000384092 107 ntBASIC0.02□□□□□ -2.41
SMARCA1P28370 MIR203A-201ENST00000384836 110 ntBASIC0.02□□□□□ -2.41
SMARCA1P28370 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.02□□□□□ -2.41
SMARCA1P28370 CR383656.4-201ENST00000546909 122 ntBASIC0.02□□□□□ -2.41
SMARCA1P28370 MIR4666B-201ENST00000578142 81 ntBASIC0.02□□□□□ -2.41
SMARCA1P28370 MIR4290-201ENST00000583807 95 ntBASIC0.02□□□□□ -2.41
SMARCA1P28370 RNU6-681P-201ENST00000364012 104 ntBASIC0.01□□□□□ -2.41
SMARCA1P28370 RNU6-787P-201ENST00000384032 107 ntBASIC0.01□□□□□ -2.41
SMARCA1P28370 SNORA49-201ENST00000386157 136 ntBASIC0.01□□□□□ -2.41
SMARCA1P28370 SNORA26.2-201ENST00000390922 122 ntBASIC0.01□□□□□ -2.41
SMARCA1P28370 RNA5SP25-201ENST00000410815 110 ntBASIC0.01□□□□□ -2.41
SMARCA1P28370 MIR4667-201ENST00000578933 66 ntBASIC0.01□□□□□ -2.41
SMARCA1P28370 Y_RNA.532-201ENST00000384590 113 ntBASIC0□□□□□ -2.41
SMARCA1P28370 RNU7-159P-201ENST00000459284 62 ntBASIC0□□□□□ -2.41
SMARCA1P28370 RNU6-303P-201ENST00000517091 106 ntBASIC-0.01□□□□□ -2.41
SMARCA1P28370 MIR3657-201ENST00000584818 117 ntBASIC-0.01□□□□□ -2.41
SMARCA1P28370 AP001180.6-201ENST00000584918 159 ntBASIC-0.01□□□□□ -2.41
SMARCA1P28370 RNU6-315P-201ENST00000362666 107 ntBASIC-0.02□□□□□ -2.41
SMARCA1P28370 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.02□□□□□ -2.41
SMARCA1P28370 RNU6-929P-201ENST00000384429 107 ntBASIC-0.02□□□□□ -2.41
SMARCA1P28370 RNU6-752P-201ENST00000516376 102 ntBASIC-0.02□□□□□ -2.41
SMARCA1P28370 RNU6-573P-201ENST00000383938 106 ntBASIC-0.03□□□□□ -2.41
SMARCA1P28370 MIR604-201ENST00000384880 94 ntBASIC-0.03□□□□□ -2.41
SMARCA1P28370 AC074348.1-201ENST00000426503 132 ntBASIC-0.03□□□□□ -2.41
SMARCA1P28370 snoU13.13-201ENST00000458842 104 ntBASIC-0.03□□□□□ -2.41
SMARCA1P28370 MIR4493-201ENST00000584016 73 ntBASIC-0.03□□□□□ -2.41
SMARCA1P28370 MIR148A-201ENST00000362215 68 ntBASIC-0.04□□□□□ -2.42
SMARCA1P28370 RNU6-330P-201ENST00000363015 107 ntBASIC-0.04□□□□□ -2.42
SMARCA1P28370 RNA5SP173-201ENST00000364857 136 ntBASIC-0.04□□□□□ -2.42
SMARCA1P28370 SNORA63.6-201ENST00000364921 119 ntBASIC-0.04□□□□□ -2.42
SMARCA1P28370 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.04□□□□□ -2.42
SMARCA1P28370 AC145423.2-201ENST00000610631 239 ntBASIC-0.04□□□□□ -2.42
SMARCA1P28370 MIR6507-201ENST00000613630 70 ntBASIC-0.04□□□□□ -2.42
SMARCA1P28370 MIR1245B-201ENST00000636115 69 ntBASIC-0.04□□□□□ -2.42
SMARCA1P28370 SNORD114-15-201ENST00000364687 72 ntBASIC-0.05□□□□□ -2.42
SMARCA1P28370 RNA5SP67-201ENST00000516422 131 ntBASIC-0.05□□□□□ -2.42
SMARCA1P28370 RNA5SP147-201ENST00000516493 109 ntBASIC-0.05□□□□□ -2.42
SMARCA1P28370 MIR4712-201ENST00000583750 82 ntBASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms