Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.84□□□□□ -2.54
SDC1P18827 MIR4796-201ENST00000580742 81 ntBASIC-0.84□□□□□ -2.54
SDC1P18827 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.85□□□□□ -2.55
SDC1P18827 RNU6-162P-201ENST00000516228 103 ntBASIC-0.85□□□□□ -2.55
SDC1P18827 MIR3179-1-201ENST00000578940 84 ntBASIC-0.85□□□□□ -2.55
SDC1P18827 MIR3179-2-201ENST00000579107 84 ntBASIC-0.85□□□□□ -2.55
SDC1P18827 MIR3179-3-201ENST00000579566 84 ntBASIC-0.85□□□□□ -2.55
SDC1P18827 U7.3-201ENST00000616123 62 ntBASIC-0.85□□□□□ -2.55
SDC1P18827 MIR3179-4-201ENST00000617599 84 ntBASIC-0.85□□□□□ -2.55
SDC1P18827 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.85□□□□□ -2.55
SDC1P18827 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.86□□□□□ -2.55
SDC1P18827 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.86□□□□□ -2.55
SDC1P18827 RNU4-63P-201ENST00000411313 118 ntBASIC-0.86□□□□□ -2.55
SDC1P18827 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-0.86□□□□□ -2.55
SDC1P18827 TMSB4XP3-201ENST00000445144 114 ntBASIC-0.86□□□□□ -2.55
SDC1P18827 SNORD22.1-201ENST00000516331 125 ntBASIC-0.86□□□□□ -2.55
SDC1P18827 U6.96-201ENST00000636425 70 ntBASIC-0.86□□□□□ -2.55
SDC1P18827 SNORD95.1-201ENST00000364099 68 ntBASIC-0.87□□□□□ -2.55
SDC1P18827 RNU6-260P-201ENST00000384092 107 ntBASIC-0.87□□□□□ -2.55
SDC1P18827 RNU6-721P-201ENST00000410155 105 ntBASIC-0.87□□□□□ -2.55
SDC1P18827 RNU6-589P-201ENST00000516485 107 ntBASIC-0.87□□□□□ -2.55
SDC1P18827 AC090617.8-201ENST00000623339 167 ntBASIC-0.87□□□□□ -2.55
SDC1P18827 MIR203A-201ENST00000384836 110 ntBASIC-0.88□□□□□ -2.55
SDC1P18827 MIR1236-201ENST00000408340 102 ntBASIC-0.88□□□□□ -2.55
SDC1P18827 RNA5SP147-201ENST00000516493 109 ntBASIC-0.88□□□□□ -2.55
SDC1P18827 U6.81-201ENST00000612550 106 ntBASIC-0.88□□□□□ -2.55
SDC1P18827 MIR6509-201ENST00000614603 85 ntBASIC-0.88□□□□□ -2.55
SDC1P18827 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.89□□□□□ -2.55
SDC1P18827 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.89□□□□□ -2.55
SDC1P18827 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.89□□□□□ -2.55
SDC1P18827 RNA5SP395-201ENST00000516567 118 ntBASIC-0.89□□□□□ -2.55
SDC1P18827 RNU6-881P-201ENST00000516813 102 ntBASIC-0.89□□□□□ -2.55
SDC1P18827 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.9□□□□□ -2.55
SDC1P18827 RNU6-905P-201ENST00000384434 107 ntBASIC-0.9□□□□□ -2.55
SDC1P18827 RNY1P7-201ENST00000384743 110 ntBASIC-0.9□□□□□ -2.55
SDC1P18827 MIR548M-201ENST00000408260 86 ntBASIC-0.9□□□□□ -2.55
SDC1P18827 MIR3681-201ENST00000580089 72 ntBASIC-0.9□□□□□ -2.55
SDC1P18827 YWHAEP3-201ENST00000582767 121 ntBASIC-0.9□□□□□ -2.55
SDC1P18827 MIR3657-201ENST00000584818 117 ntBASIC-0.9□□□□□ -2.55
SDC1P18827 RNU6-766P-201ENST00000362478 107 ntBASIC-0.91□□□□□ -2.56
SDC1P18827 SNORA2.1-201ENST00000363089 137 ntBASIC-0.91□□□□□ -2.56
SDC1P18827 RNU6-22P-201ENST00000384355 107 ntBASIC-0.91□□□□□ -2.56
SDC1P18827 RNU6-274P-201ENST00000459566 107 ntBASIC-0.91□□□□□ -2.56
SDC1P18827 RNU7-153P-201ENST00000516455 62 ntBASIC-0.91□□□□□ -2.56
SDC1P18827 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.91□□□□□ -2.56
SDC1P18827 RNU6-834P-201ENST00000362367 110 ntBASIC-0.92□□□□□ -2.56
SDC1P18827 SNORD74.6-201ENST00000364796 70 ntBASIC-0.92□□□□□ -2.56
SDC1P18827 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.92□□□□□ -2.56
SDC1P18827 RNA5SP25-201ENST00000410815 110 ntBASIC-0.92□□□□□ -2.56
SDC1P18827 AL691482.2-201ENST00000457453 84 ntBASIC-0.92□□□□□ -2.56
SDC1P18827 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.92□□□□□ -2.56
SDC1P18827 SNORA33.1-201ENST00000364957 130 ntBASIC-0.93□□□□□ -2.56
SDC1P18827 RNU6-1117P-201ENST00000384525 104 ntBASIC-0.93□□□□□ -2.56
SDC1P18827 AP000533.3-201ENST00000447704 118 ntBASIC-0.93□□□□□ -2.56
SDC1P18827 AC022137.1-201ENST00000483735 151 ntBASIC-0.93□□□□□ -2.56
SDC1P18827 MIR6086-201ENST00000638065 55 ntBASIC-0.93□□□□□ -2.56
SDC1P18827 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.94□□□□□ -2.56
SDC1P18827 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.94□□□□□ -2.56
SDC1P18827 SNORD115-27-201ENST00000364430 82 ntBASIC-0.94□□□□□ -2.56
SDC1P18827 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.94□□□□□ -2.56
SDC1P18827 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.94□□□□□ -2.56
SDC1P18827 MIR517B-201ENST00000385102 67 ntBASIC-0.94□□□□□ -2.56
SDC1P18827 MIR196A1-201ENST00000388006 70 ntBASIC-0.94□□□□□ -2.56
SDC1P18827 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-0.94□□□□□ -2.56
SDC1P18827 RNU6-208P-201ENST00000362431 107 ntBASIC-0.95□□□□□ -2.56
SDC1P18827 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.95□□□□□ -2.56
SDC1P18827 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.95□□□□□ -2.56
SDC1P18827 SNORA62.4-201ENST00000365504 151 ntBASIC-0.95□□□□□ -2.56
SDC1P18827 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.95□□□□□ -2.56
SDC1P18827 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.95□□□□□ -2.56
SDC1P18827 RNU6-158P-201ENST00000517104 100 ntBASIC-0.95□□□□□ -2.56
SDC1P18827 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.96□□□□□ -2.56
SDC1P18827 MTATP8P2-201ENST00000435212 202 ntBASIC-0.96□□□□□ -2.56
SDC1P18827 AL450471.1-201ENST00000447509 127 ntBASIC-0.96□□□□□ -2.56
SDC1P18827 AL353803.5-201ENST00000599815 141 ntBASIC-0.96□□□□□ -2.56
SDC1P18827 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.97□□□□□ -2.56
SDC1P18827 SCARNA17-201ENST00000516183 144 ntBASIC-0.97□□□□□ -2.56
SDC1P18827 RNU6-479P-201ENST00000516348 105 ntBASIC-0.97□□□□□ -2.56
SDC1P18827 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.98□□□□□ -2.57
SDC1P18827 MIR519C-201ENST00000385053 87 ntBASIC-0.98□□□□□ -2.57
SDC1P18827 MIR4464-201ENST00000580818 92 ntBASIC-0.98□□□□□ -2.57
SDC1P18827 MIR124-2-201ENST00000385081 109 ntBASIC-0.99□□□□□ -2.57
SDC1P18827 RNU6-313P-201ENST00000516317 112 ntBASIC-0.99□□□□□ -2.57
SDC1P18827 MIR1255B2-201ENST00000408618 67 ntBASIC-1□□□□□ -2.57
SDC1P18827 AL031737.1-201ENST00000450125 223 ntBASIC-1□□□□□ -2.57
SDC1P18827 SNORD18.2-201ENST00000459604 70 ntBASIC-1□□□□□ -2.57
SDC1P18827 MIR450A1-201ENST00000362262 91 ntBASIC-1.01□□□□□ -2.57
SDC1P18827 RNU6-340P-201ENST00000364005 107 ntBASIC-1.01□□□□□ -2.57
SDC1P18827 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.01□□□□□ -2.57
SDC1P18827 MIR521-2-201ENST00000384818 87 ntBASIC-1.01□□□□□ -2.57
SDC1P18827 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.01□□□□□ -2.57
SDC1P18827 RNU6-752P-201ENST00000516376 102 ntBASIC-1.01□□□□□ -2.57
SDC1P18827 CYP3A54P-201ENST00000566950 75 ntBASIC-1.01□□□□□ -2.57
SDC1P18827 SNORD83B-201ENST00000386745 93 ntBASIC-1.02□□□□□ -2.57
SDC1P18827 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.02□□□□□ -2.57
SDC1P18827 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.02□□□□□ -2.57
SDC1P18827 RNA5SP470-201ENST00000516463 106 ntBASIC-1.02□□□□□ -2.57
SDC1P18827 MIR3910-1-201ENST00000580936 111 ntBASIC-1.02□□□□□ -2.57
SDC1P18827 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.02□□□□□ -2.57
SDC1P18827 MIR2052-201ENST00000636055 55 ntBASIC-1.02□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 224.3 ms