Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 Y_RNA.788-201ENST00000622394 112 ntBASIC0.31□□□□□ -2.36
LMX1BO60663 MIR499B-201ENST00000636498 73 ntBASIC0.31□□□□□ -2.36
LMX1BO60663 RNU6-1039P-201ENST00000383931 107 ntBASIC0.3□□□□□ -2.36
LMX1BO60663 RNA5SP63-201ENST00000391225 112 ntBASIC0.3□□□□□ -2.36
LMX1BO60663 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.3□□□□□ -2.36
LMX1BO60663 AC023932.2-201ENST00000603176 175 ntBASIC0.3□□□□□ -2.36
LMX1BO60663 RNU6-990P-201ENST00000364385 104 ntBASIC0.29□□□□□ -2.36
LMX1BO60663 MIR582-201ENST00000365731 98 ntBASIC0.29□□□□□ -2.36
LMX1BO60663 MIR4484-201ENST00000582855 83 ntBASIC0.29□□□□□ -2.36
LMX1BO60663 MIR2909-201ENST00000617113 69 ntBASIC0.29□□□□□ -2.36
LMX1BO60663 uc_338.10-201ENST00000621872 182 ntBASIC0.29□□□□□ -2.36
LMX1BO60663 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
LMX1BO60663 RNU6-1094P-201ENST00000362416 104 ntBASIC0.28□□□□□ -2.36
LMX1BO60663 RNU6-24P-201ENST00000384440 107 ntBASIC0.28□□□□□ -2.36
LMX1BO60663 MIR548H2-201ENST00000408874 88 ntBASIC0.28□□□□□ -2.36
LMX1BO60663 SCARNA17.3-201ENST00000516381 125 ntBASIC0.28□□□□□ -2.36
LMX1BO60663 AC069113.3-201ENST00000521019 150 ntBASIC0.28□□□□□ -2.36
LMX1BO60663 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
LMX1BO60663 MIR516B1-201ENST00000385211 90 ntBASIC0.27□□□□□ -2.37
LMX1BO60663 RNU6-127P-201ENST00000390897 107 ntBASIC0.27□□□□□ -2.37
LMX1BO60663 U7.6-201ENST00000610841 64 ntBASIC0.27□□□□□ -2.37
LMX1BO60663 RNU6-681P-201ENST00000364012 104 ntBASIC0.26□□□□□ -2.37
LMX1BO60663 RNU6-260P-201ENST00000384092 107 ntBASIC0.26□□□□□ -2.37
LMX1BO60663 MIR548E-201ENST00000408287 88 ntBASIC0.26□□□□□ -2.37
LMX1BO60663 RNU6-274P-201ENST00000459566 107 ntBASIC0.26□□□□□ -2.37
LMX1BO60663 RNU6-752P-201ENST00000516376 102 ntBASIC0.26□□□□□ -2.37
LMX1BO60663 RNU6-175P-201ENST00000516896 107 ntBASIC0.26□□□□□ -2.37
LMX1BO60663 MIR664A-201ENST00000626086 82 ntBASIC0.26□□□□□ -2.37
LMX1BO60663 MIR1297-201ENST00000637311 77 ntBASIC0.26□□□□□ -2.37
LMX1BO60663 MIR203A-201ENST00000384836 110 ntBASIC0.25□□□□□ -2.37
LMX1BO60663 MIR876-201ENST00000401147 81 ntBASIC0.25□□□□□ -2.37
LMX1BO60663 AC073261.1-201ENST00000429409 121 ntBASIC0.25□□□□□ -2.37
LMX1BO60663 MIR3134-201ENST00000579433 74 ntBASIC0.25□□□□□ -2.37
LMX1BO60663 MIR3657-201ENST00000584818 117 ntBASIC0.25□□□□□ -2.37
LMX1BO60663 MIR6509-201ENST00000614603 85 ntBASIC0.25□□□□□ -2.37
LMX1BO60663 RN7SL660P-201ENST00000614852 299 ntBASIC0.25□□□□□ -2.37
LMX1BO60663 SNORA9.1-201ENST00000362412 131 ntBASIC0.24□□□□□ -2.37
LMX1BO60663 SNORD114-4-201ENST00000363962 75 ntBASIC0.24□□□□□ -2.37
LMX1BO60663 AL691482.2-201ENST00000457453 84 ntBASIC0.24□□□□□ -2.37
LMX1BO60663 RNU6-523P-201ENST00000516304 54 ntBASIC0.24□□□□□ -2.37
LMX1BO60663 RNA5SP134-201ENST00000516492 96 ntBASIC0.24□□□□□ -2.37
LMX1BO60663 RNU6-782P-201ENST00000516852 104 ntBASIC0.24□□□□□ -2.37
LMX1BO60663 RNU7-188P-201ENST00000517063 64 ntBASIC0.24□□□□□ -2.37
LMX1BO60663 Y_RNA.244-201ENST00000364484 109 ntBASIC0.23□□□□□ -2.37
LMX1BO60663 SNORA49-201ENST00000386157 136 ntBASIC0.23□□□□□ -2.37
LMX1BO60663 Y_RNA.633-201ENST00000459107 95 ntBASIC0.23□□□□□ -2.37
LMX1BO60663 RNU7-129P-201ENST00000516128 62 ntBASIC0.23□□□□□ -2.37
LMX1BO60663 RNU6-807P-201ENST00000516805 107 ntBASIC0.23□□□□□ -2.37
LMX1BO60663 SNORA8.1-201ENST00000384250 140 ntBASIC0.22□□□□□ -2.37
LMX1BO60663 RNU6-380P-201ENST00000410207 107 ntBASIC0.22□□□□□ -2.37
LMX1BO60663 MIR3675-201ENST00000583661 73 ntBASIC0.22□□□□□ -2.37
LMX1BO60663 AC145423.2-201ENST00000610631 239 ntBASIC0.22□□□□□ -2.37
LMX1BO60663 AC244090.1-201ENST00000441884 93 ntBASIC0.21□□□□□ -2.38
LMX1BO60663 RNU6-638P-201ENST00000516582 104 ntBASIC0.21□□□□□ -2.38
LMX1BO60663 RNA5SP285-201ENST00000516619 119 ntBASIC0.21□□□□□ -2.38
LMX1BO60663 SCARNA11.2-201ENST00000517183 154 ntBASIC0.21□□□□□ -2.38
LMX1BO60663 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
LMX1BO60663 AC084368.1-201ENST00000620935 65 ntBASIC0.21□□□□□ -2.38
LMX1BO60663 MIR4315-1-201ENST00000636800 73 ntBASIC0.21□□□□□ -2.38
LMX1BO60663 MIR4315-2-201ENST00000640925 73 ntBASIC0.21□□□□□ -2.38
LMX1BO60663 MIR20A-201ENST00000362279 71 ntBASIC0.2□□□□□ -2.38
LMX1BO60663 SNORA2.1-201ENST00000363089 137 ntBASIC0.2□□□□□ -2.38
LMX1BO60663 U7.4-201ENST00000614961 63 ntBASIC0.2□□□□□ -2.38
LMX1BO60663 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.2□□□□□ -2.38
LMX1BO60663 SNORD114-29-201ENST00000364819 70 ntBASIC0.19□□□□□ -2.38
LMX1BO60663 MIR643-201ENST00000385267 97 ntBASIC0.19□□□□□ -2.38
LMX1BO60663 MIR1295A-201ENST00000408463 79 ntBASIC0.19□□□□□ -2.38
LMX1BO60663 snoU13.13-201ENST00000458842 104 ntBASIC0.19□□□□□ -2.38
LMX1BO60663 RNU6-687P-201ENST00000516443 89 ntBASIC0.19□□□□□ -2.38
LMX1BO60663 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
LMX1BO60663 SNORA42.1-201ENST00000363515 137 ntBASIC0.18□□□□□ -2.38
LMX1BO60663 MIR889-201ENST00000401280 79 ntBASIC0.18□□□□□ -2.38
LMX1BO60663 RNA5SP147-201ENST00000516493 109 ntBASIC0.18□□□□□ -2.38
LMX1BO60663 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.18□□□□□ -2.38
LMX1BO60663 SNORD115-22-201ENST00000364456 82 ntBASIC0.17□□□□□ -2.38
LMX1BO60663 RNU6-35P-201ENST00000384530 107 ntBASIC0.17□□□□□ -2.38
LMX1BO60663 MIR106A-201ENST00000384870 81 ntBASIC0.17□□□□□ -2.38
LMX1BO60663 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
LMX1BO60663 RNU6-70P-201ENST00000516438 60 ntBASIC0.17□□□□□ -2.38
LMX1BO60663 RNU6-180P-201ENST00000516697 61 ntBASIC0.17□□□□□ -2.38
LMX1BO60663 MIR6718-201ENST00000616153 80 ntBASIC0.17□□□□□ -2.38
LMX1BO60663 MIR6739-201ENST00000622461 75 ntBASIC0.17□□□□□ -2.38
LMX1BO60663 SNORD45.1-201ENST00000363181 77 ntBASIC0.16□□□□□ -2.38
LMX1BO60663 RNU6-776P-201ENST00000364403 104 ntBASIC0.16□□□□□ -2.38
LMX1BO60663 SNORA63.6-201ENST00000364921 119 ntBASIC0.16□□□□□ -2.38
LMX1BO60663 RNU6-1022P-201ENST00000365049 104 ntBASIC0.16□□□□□ -2.38
LMX1BO60663 RNU6-1241P-201ENST00000384536 107 ntBASIC0.16□□□□□ -2.38
LMX1BO60663 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
LMX1BO60663 SNORA75.1-201ENST00000391130 148 ntBASIC0.16□□□□□ -2.38
LMX1BO60663 RNA5SP299-201ENST00000391203 116 ntBASIC0.16□□□□□ -2.38
LMX1BO60663 AC104408.1-201ENST00000605241 170 ntBASIC0.16□□□□□ -2.38
LMX1BO60663 SNORD114-9-201ENST00000364370 72 ntBASIC0.15□□□□□ -2.39
LMX1BO60663 RNU6-604P-201ENST00000390917 100 ntBASIC0.15□□□□□ -2.39
LMX1BO60663 AC021146.9-201ENST00000512503 156 ntBASIC0.15□□□□□ -2.39
LMX1BO60663 RNU6-656P-201ENST00000516785 107 ntBASIC0.15□□□□□ -2.39
LMX1BO60663 RNU6-1015P-201ENST00000517121 99 ntBASIC0.15□□□□□ -2.39
LMX1BO60663 RNA5SP214-201ENST00000363378 118 ntBASIC0.14□□□□□ -2.39
LMX1BO60663 Y_RNA.250-201ENST00000364542 110 ntBASIC0.14□□□□□ -2.39
LMX1BO60663 SNORD115-31-201ENST00000365318 82 ntBASIC0.14□□□□□ -2.39
LMX1BO60663 RNU6-1036P-201ENST00000383959 104 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms