Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.434-201ENST00000384090 100 ntBASIC-4.3□□□□□ -3.1
CCDC88BA6NC98 Y_RNA.445-201ENST00000384168 102 ntBASIC-4.3□□□□□ -3.1
CCDC88BA6NC98 Y_RNA.581-201ENST00000391017 97 ntBASIC-4.3□□□□□ -3.1
CCDC88BA6NC98 MIR5690-201ENST00000583739 73 ntBASIC-4.3□□□□□ -3.1
CCDC88BA6NC98 AC002553.4-201ENST00000616896 331 ntBASIC-4.3□□□□□ -3.1
CCDC88BA6NC98 SNORD116-6-201ENST00000384711 96 ntBASIC-4.3□□□□□ -3.1
CCDC88BA6NC98 AC025166.1-201ENST00000612411 163 ntBASIC-4.3□□□□□ -3.1
CCDC88BA6NC98 Y_RNA.198-201ENST00000364013 98 ntBASIC-4.31□□□□□ -3.1
CCDC88BA6NC98 Y_RNA.485-201ENST00000384395 102 ntBASIC-4.31□□□□□ -3.1
CCDC88BA6NC98 Y_RNA.797-201ENST00000515977 94 ntBASIC-4.31□□□□□ -3.1
CCDC88BA6NC98 RNU6-523P-201ENST00000516304 54 ntBASIC-4.31□□□□□ -3.1
CCDC88BA6NC98 SNORA40.14-201ENST00000516543 86 ntBASIC-4.31□□□□□ -3.1
CCDC88BA6NC98 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-4.31□□□□□ -3.1
CCDC88BA6NC98 RNU6-816P-201ENST00000390914 107 ntBASIC-4.32□□□□□ -3.1
CCDC88BA6NC98 RNU6-1268P-201ENST00000391214 107 ntBASIC-4.32□□□□□ -3.1
CCDC88BA6NC98 RNU6-1239P-201ENST00000391310 107 ntBASIC-4.32□□□□□ -3.1
CCDC88BA6NC98 Y_RNA.63-201ENST00000362841 102 ntBASIC-4.33□□□□□ -3.1
CCDC88BA6NC98 RNU6-698P-201ENST00000363523 107 ntBASIC-4.33□□□□□ -3.1
CCDC88BA6NC98 Y_RNA.279-201ENST00000364763 95 ntBASIC-4.33□□□□□ -3.1
CCDC88BA6NC98 RNU6-34P-201ENST00000364874 107 ntBASIC-4.33□□□□□ -3.1
CCDC88BA6NC98 RNU6-768P-201ENST00000384683 107 ntBASIC-4.33□□□□□ -3.1
CCDC88BA6NC98 MIR579-201ENST00000385221 98 ntBASIC-4.33□□□□□ -3.1
CCDC88BA6NC98 MIR202-201ENST00000362219 110 ntBASIC-4.34□□□□□ -3.1
CCDC88BA6NC98 Y_RNA.321-201ENST00000365149 102 ntBASIC-4.34□□□□□ -3.1
CCDC88BA6NC98 Y_RNA.401-201ENST00000383965 117 ntBASIC-4.34□□□□□ -3.1
CCDC88BA6NC98 AL450471.1-201ENST00000447509 127 ntBASIC-4.34□□□□□ -3.1
CCDC88BA6NC98 AC103810.7-201ENST00000607821 91 ntBASIC-4.34□□□□□ -3.1
CCDC88BA6NC98 U4.4-201ENST00000620626 117 ntBASIC-4.34□□□□□ -3.1
CCDC88BA6NC98 RNU6-770P-201ENST00000363929 105 ntBASIC-4.35□□□□□ -3.11
CCDC88BA6NC98 Y_RNA.275-201ENST00000364726 110 ntBASIC-4.35□□□□□ -3.11
CCDC88BA6NC98 RNU6-649P-201ENST00000384463 107 ntBASIC-4.35□□□□□ -3.11
CCDC88BA6NC98 RNU6-510P-201ENST00000391239 108 ntBASIC-4.35□□□□□ -3.11
CCDC88BA6NC98 MIR1254-1-201ENST00000408257 97 ntBASIC-4.35□□□□□ -3.11
CCDC88BA6NC98 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC-4.35□□□□□ -3.11
CCDC88BA6NC98 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-4.35□□□□□ -3.11
CCDC88BA6NC98 RNU6-520P-201ENST00000384717 104 ntBASIC-4.36□□□□□ -3.11
CCDC88BA6NC98 SNORA17.4-201ENST00000391287 132 ntBASIC-4.36□□□□□ -3.11
CCDC88BA6NC98 SNORD116.3-201ENST00000517176 78 ntBASIC-4.36□□□□□ -3.11
CCDC88BA6NC98 AC090574.1-201ENST00000623186 233 ntBASIC-4.36□□□□□ -3.11
CCDC88BA6NC98 RNU6-974P-201ENST00000384099 108 ntBASIC-4.37□□□□□ -3.11
CCDC88BA6NC98 MIR559-201ENST00000385188 96 ntBASIC-4.37□□□□□ -3.11
CCDC88BA6NC98 MIR548AJ2-201ENST00000408539 92 ntBASIC-4.37□□□□□ -3.11
CCDC88BA6NC98 Y_RNA.668-201ENST00000516233 93 ntBASIC-4.37□□□□□ -3.11
CCDC88BA6NC98 RNU6-1188P-201ENST00000363795 107 ntBASIC-4.37□□□□□ -3.11
CCDC88BA6NC98 MIR577-201ENST00000385196 96 ntBASIC-4.37□□□□□ -3.11
CCDC88BA6NC98 SNORD113-2-201ENST00000391082 72 ntBASIC-4.37□□□□□ -3.11
CCDC88BA6NC98 RNU4-14P-201ENST00000410858 122 ntBASIC-4.37□□□□□ -3.11
CCDC88BA6NC98 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-4.37□□□□□ -3.11
CCDC88BA6NC98 Y_RNA.281-201ENST00000364774 94 ntBASIC-4.38□□□□□ -3.11
CCDC88BA6NC98 MIR548V-201ENST00000584165 80 ntBASIC-4.38□□□□□ -3.11
CCDC88BA6NC98 Y_RNA.183-201ENST00000363882 113 ntBASIC-4.39□□□□□ -3.11
CCDC88BA6NC98 MIR630-201ENST00000384957 97 ntBASIC-4.39□□□□□ -3.11
CCDC88BA6NC98 RNU6-345P-201ENST00000517001 107 ntBASIC-4.39□□□□□ -3.11
CCDC88BA6NC98 Y_RNA.455-201ENST00000384230 98 ntBASIC-4.4□□□□□ -3.11
CCDC88BA6NC98 Y_RNA.402-201ENST00000383972 102 ntBASIC-4.41□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.663-201ENST00000516043 101 ntBASIC-4.41□□□□□ -3.12
CCDC88BA6NC98 SNORD115-37-201ENST00000363768 82 ntBASIC-4.42□□□□□ -3.12
CCDC88BA6NC98 MIR6844-201ENST00000637122 62 ntBASIC-4.42□□□□□ -3.12
CCDC88BA6NC98 SNORD116-16-201ENST00000384533 92 ntBASIC-4.43□□□□□ -3.12
CCDC88BA6NC98 RNU6-813P-201ENST00000384691 107 ntBASIC-4.43□□□□□ -3.12
CCDC88BA6NC98 SNORD2.1-201ENST00000458762 69 ntBASIC-4.43□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.686-201ENST00000516548 134 ntBASIC-4.43□□□□□ -3.12
CCDC88BA6NC98 MIR4796-201ENST00000580742 81 ntBASIC-4.43□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.16-201ENST00000362421 102 ntBASIC-4.43□□□□□ -3.12
CCDC88BA6NC98 SNORD58B-201ENST00000607313 66 ntBASIC-4.43□□□□□ -3.12
CCDC88BA6NC98 Z99129.1-201ENST00000612510 255 ntBASIC-4.43□□□□□ -3.12
CCDC88BA6NC98 AC104985.2-201ENST00000620598 500 ntBASIC-4.43□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.154-201ENST00000363624 102 ntBASIC-4.44□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.307-201ENST00000365022 117 ntBASIC-4.44□□□□□ -3.12
CCDC88BA6NC98 RNY4P18-201ENST00000391107 89 ntBASIC-4.44□□□□□ -3.12
CCDC88BA6NC98 MIR1263-201ENST00000408324 86 ntBASIC-4.44□□□□□ -3.12
CCDC88BA6NC98 MIR4439-201ENST00000583746 80 ntBASIC-4.44□□□□□ -3.12
CCDC88BA6NC98 MIR7978-201ENST00000636158 59 ntBASIC-4.44□□□□□ -3.12
CCDC88BA6NC98 SNORD1B-201ENST00000363091 84 ntBASIC-4.45□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.129-201ENST00000363392 110 ntBASIC-4.45□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.237-201ENST00000364439 102 ntBASIC-4.45□□□□□ -3.12
CCDC88BA6NC98 RNU6-361P-201ENST00000364454 107 ntBASIC-4.45□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.47-201ENST00000362697 108 ntBASIC-4.46□□□□□ -3.12
CCDC88BA6NC98 RNU6-668P-201ENST00000364180 107 ntBASIC-4.46□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.262-201ENST00000364641 102 ntBASIC-4.46□□□□□ -3.12
CCDC88BA6NC98 SNORA75.5-201ENST00000391291 81 ntBASIC-4.46□□□□□ -3.12
CCDC88BA6NC98 Y_RNA.604-201ENST00000410574 102 ntBASIC-4.46□□□□□ -3.12
CCDC88BA6NC98 RNU6-68P-201ENST00000516576 104 ntBASIC-4.46□□□□□ -3.12
CCDC88BA6NC98 RNU6-867P-201ENST00000364956 107 ntBASIC-4.48□□□□□ -3.13
CCDC88BA6NC98 Y_RNA.520-201ENST00000384556 102 ntBASIC-4.48□□□□□ -3.13
CCDC88BA6NC98 Y_RNA.590-201ENST00000410140 107 ntBASIC-4.48□□□□□ -3.13
CCDC88BA6NC98 RNU5A-2P-201ENST00000384337 116 ntBASIC-4.49□□□□□ -3.13
CCDC88BA6NC98 RNU6-121P-201ENST00000410525 99 ntBASIC-4.49□□□□□ -3.13
CCDC88BA6NC98 RNU6-1318P-201ENST00000365389 103 ntBASIC-4.49□□□□□ -3.13
CCDC88BA6NC98 RNU6-956P-201ENST00000458868 103 ntBASIC-4.49□□□□□ -3.13
CCDC88BA6NC98 Y_RNA.44-201ENST00000362676 108 ntBASIC-4.5□□□□□ -3.13
CCDC88BA6NC98 RNA5SP136-201ENST00000410906 107 ntBASIC-4.5□□□□□ -3.13
CCDC88BA6NC98 Y_RNA.359-201ENST00000365498 102 ntBASIC-4.51□□□□□ -3.13
CCDC88BA6NC98 MIR125B1-201ENST00000385236 88 ntBASIC-4.51□□□□□ -3.13
CCDC88BA6NC98 MIR3613-201ENST00000579844 87 ntBASIC-4.51□□□□□ -3.13
CCDC88BA6NC98 RNU6-259P-201ENST00000383999 107 ntBASIC-4.52□□□□□ -3.13
CCDC88BA6NC98 Y_RNA.661-201ENST00000516003 99 ntBASIC-4.52□□□□□ -3.13
CCDC88BA6NC98 MIR4694-201ENST00000578534 80 ntBASIC-4.52□□□□□ -3.13
CCDC88BA6NC98 Y_RNA.139-201ENST00000363464 102 ntBASIC-4.53□□□□□ -3.13
CCDC88BA6NC98 SNORD45B-201ENST00000364617 72 ntBASIC-4.53□□□□□ -3.13
Retrieved 100 of 98,524 protein–RNA pairs in 176.1 ms