Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RNU6-321P-201ENST00000410912 106 ntBASIC2.36□□□□□ -2.03
CCDC61Q9Y6R9 RNU6-518P-201ENST00000516056 96 ntBASIC2.36□□□□□ -2.03
CCDC61Q9Y6R9 MIR5694-201ENST00000581190 76 ntBASIC2.36□□□□□ -2.03
CCDC61Q9Y6R9 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC61Q9Y6R9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
CCDC61Q9Y6R9 MIR4422-201ENST00000581938 83 ntBASIC2.35□□□□□ -2.03
CCDC61Q9Y6R9 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC61Q9Y6R9 RNU6-247P-201ENST00000362636 107 ntBASIC2.34□□□□□ -2.03
CCDC61Q9Y6R9 MIR4419B-201ENST00000577260 68 ntBASIC2.34□□□□□ -2.03
CCDC61Q9Y6R9 AL096840.1-201ENST00000603287 93 ntBASIC2.34□□□□□ -2.03
CCDC61Q9Y6R9 MIR144-201ENST00000384886 86 ntBASIC2.33□□□□□ -2.04
CCDC61Q9Y6R9 SNORA70.22-201ENST00000517160 124 ntBASIC2.33□□□□□ -2.04
CCDC61Q9Y6R9 Y_RNA.226-201ENST00000364337 114 ntBASIC2.32□□□□□ -2.04
CCDC61Q9Y6R9 Y_RNA.282-201ENST00000364793 102 ntBASIC2.32□□□□□ -2.04
CCDC61Q9Y6R9 MIR548E-201ENST00000408287 88 ntBASIC2.32□□□□□ -2.04
CCDC61Q9Y6R9 AP000553.5-201ENST00000641933 54 ntBASIC2.32□□□□□ -2.04
CCDC61Q9Y6R9 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
CCDC61Q9Y6R9 RNU6-246P-201ENST00000384702 107 ntBASIC2.31□□□□□ -2.04
CCDC61Q9Y6R9 SNORD12-201ENST00000391002 90 ntBASIC2.31□□□□□ -2.04
CCDC61Q9Y6R9 HMGN2P19-201ENST00000425149 265 ntBASIC2.31□□□□□ -2.04
CCDC61Q9Y6R9 SCARNA16.5-201ENST00000517114 183 ntBASIC2.31□□□□□ -2.04
CCDC61Q9Y6R9 MIR582-201ENST00000365731 98 ntBASIC2.3□□□□□ -2.04
CCDC61Q9Y6R9 RNU7-95P-201ENST00000459222 64 ntBASIC2.3□□□□□ -2.04
CCDC61Q9Y6R9 RNU1-92P-201ENST00000517017 135 ntBASIC2.3□□□□□ -2.04
CCDC61Q9Y6R9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC61Q9Y6R9 RNU6-172P-201ENST00000411000 93 ntBASIC2.29□□□□□ -2.04
CCDC61Q9Y6R9 AL162376.1-201ENST00000624117 175 ntBASIC2.29□□□□□ -2.04
CCDC61Q9Y6R9 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC61Q9Y6R9 MIR3678-201ENST00000578455 94 ntBASIC2.28□□□□□ -2.04
CCDC61Q9Y6R9 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.05
CCDC61Q9Y6R9 RNA5SP489-201ENST00000410986 109 ntBASIC2.27□□□□□ -2.05
CCDC61Q9Y6R9 RNU6-1110P-201ENST00000516462 101 ntBASIC2.27□□□□□ -2.05
CCDC61Q9Y6R9 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC61Q9Y6R9 MIR429-201ENST00000362106 83 ntBASIC2.26□□□□□ -2.05
CCDC61Q9Y6R9 SNORD105-201ENST00000386910 85 ntBASIC2.26□□□□□ -2.05
CCDC61Q9Y6R9 AC006210.1-201ENST00000424882 111 ntBASIC2.26□□□□□ -2.05
CCDC61Q9Y6R9 TRMT112P2-201ENST00000512910 132 ntBASIC2.26□□□□□ -2.05
CCDC61Q9Y6R9 RNU6-419P-201ENST00000517030 63 ntBASIC2.26□□□□□ -2.05
CCDC61Q9Y6R9 MIR4473-201ENST00000583731 91 ntBASIC2.26□□□□□ -2.05
CCDC61Q9Y6R9 MIR516B1-201ENST00000385211 90 ntBASIC2.25□□□□□ -2.05
CCDC61Q9Y6R9 SNORD89-201ENST00000390981 114 ntBASIC2.25□□□□□ -2.05
CCDC61Q9Y6R9 AC008834.1-201ENST00000511612 175 ntBASIC2.25□□□□□ -2.05
CCDC61Q9Y6R9 Y_RNA.224-201ENST00000364308 111 ntBASIC2.24□□□□□ -2.05
CCDC61Q9Y6R9 SNORD48-201ENST00000364953 64 ntBASIC2.24□□□□□ -2.05
CCDC61Q9Y6R9 MIR222-201ENST00000384992 110 ntBASIC2.24□□□□□ -2.05
CCDC61Q9Y6R9 MIR1255B2-201ENST00000408618 67 ntBASIC2.24□□□□□ -2.05
CCDC61Q9Y6R9 U7.7-201ENST00000459276 60 ntBASIC2.24□□□□□ -2.05
CCDC61Q9Y6R9 MIR548AE1-201ENST00000583292 70 ntBASIC2.24□□□□□ -2.05
CCDC61Q9Y6R9 AC243829.6-201ENST00000612652 106 ntBASIC2.24□□□□□ -2.05
CCDC61Q9Y6R9 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
CCDC61Q9Y6R9 SNORD1B-201ENST00000363091 84 ntBASIC2.23□□□□□ -2.05
CCDC61Q9Y6R9 MIR519A2-201ENST00000384990 87 ntBASIC2.23□□□□□ -2.05
CCDC61Q9Y6R9 MIR676-201ENST00000390702 67 ntBASIC2.23□□□□□ -2.05
CCDC61Q9Y6R9 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC61Q9Y6R9 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC61Q9Y6R9 RNU1-42P-201ENST00000364033 160 ntBASIC2.22□□□□□ -2.05
CCDC61Q9Y6R9 SNORD110-201ENST00000408189 75 ntBASIC2.22□□□□□ -2.05
CCDC61Q9Y6R9 MIR1287-201ENST00000408492 90 ntBASIC2.22□□□□□ -2.05
CCDC61Q9Y6R9 SNORD53B-201ENST00000577887 78 ntBASIC2.21□□□□□ -2.06
CCDC61Q9Y6R9 MIR8070-201ENST00000616510 88 ntBASIC2.21□□□□□ -2.06
CCDC61Q9Y6R9 RNA5SP227-201ENST00000516184 113 ntBASIC2.2□□□□□ -2.06
CCDC61Q9Y6R9 RNU6ATAC14P-201ENST00000516218 91 ntBASIC2.2□□□□□ -2.06
CCDC61Q9Y6R9 MIR4490-201ENST00000582647 84 ntBASIC2.2□□□□□ -2.06
CCDC61Q9Y6R9 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC61Q9Y6R9 AC243829.3-201ENST00000622177 108 ntBASIC2.2□□□□□ -2.06
CCDC61Q9Y6R9 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC61Q9Y6R9 FABP5P4-201ENST00000437203 171 ntBASIC2.19□□□□□ -2.06
CCDC61Q9Y6R9 AC002429.1-201ENST00000437672 148 ntBASIC2.19□□□□□ -2.06
CCDC61Q9Y6R9 AC012493.3-201ENST00000604494 112 ntBASIC2.19□□□□□ -2.06
CCDC61Q9Y6R9 AC090617.8-201ENST00000623339 167 ntBASIC2.19□□□□□ -2.06
CCDC61Q9Y6R9 RNU6-1250P-201ENST00000391218 107 ntBASIC2.18□□□□□ -2.06
CCDC61Q9Y6R9 MIR3612-201ENST00000579753 87 ntBASIC2.18□□□□□ -2.06
CCDC61Q9Y6R9 HMGN2P38-201ENST00000423806 265 ntBASIC2.17□□□□□ -2.06
CCDC61Q9Y6R9 MIR6828-201ENST00000636181 60 ntBASIC2.17□□□□□ -2.06
CCDC61Q9Y6R9 RNU6-724P-201ENST00000390958 105 ntBASIC2.16□□□□□ -2.06
CCDC61Q9Y6R9 SNORA67.6-201ENST00000391093 99 ntBASIC2.16□□□□□ -2.06
CCDC61Q9Y6R9 MIR573-201ENST00000384964 99 ntBASIC2.15□□□□□ -2.07
CCDC61Q9Y6R9 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 Y_RNA.109-201ENST00000363215 102 ntBASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 RNU6-392P-201ENST00000364926 101 ntBASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 RNU6-696P-201ENST00000390834 107 ntBASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 MIR1323-201ENST00000408090 73 ntBASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 RNU7-154P-201ENST00000516194 62 ntBASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 BX248123.2-201ENST00000606318 124 ntBASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.14□□□□□ -2.07
CCDC61Q9Y6R9 MIR499A-201ENST00000384903 122 ntBASIC2.13□□□□□ -2.07
CCDC61Q9Y6R9 Y_RNA.327-201ENST00000365201 102 ntBASIC2.12□□□□□ -2.07
CCDC61Q9Y6R9 AC244090.1-201ENST00000441884 93 ntBASIC2.12□□□□□ -2.07
CCDC61Q9Y6R9 SNORD2-201ENST00000459163 69 ntBASIC2.12□□□□□ -2.07
CCDC61Q9Y6R9 MIR20A-201ENST00000362279 71 ntBASIC2.11□□□□□ -2.07
CCDC61Q9Y6R9 RNU7-160P-201ENST00000516660 62 ntBASIC2.11□□□□□ -2.07
CCDC61Q9Y6R9 SNORA31.24-201ENST00000517232 57 ntBASIC2.1□□□□□ -2.07
CCDC61Q9Y6R9 MIR4421-201ENST00000578133 69 ntBASIC2.1□□□□□ -2.07
CCDC61Q9Y6R9 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.09□□□□□ -2.07
CCDC61Q9Y6R9 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.09□□□□□ -2.08
CCDC61Q9Y6R9 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
CCDC61Q9Y6R9 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC61Q9Y6R9 SNORD115-25-201ENST00000362619 82 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 196.7 ms