Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RNU7-153P-201ENST00000516455 62 ntBASIC0.1□□□□□ -2.39
UPF3AQ9H1J1 RNU6-1057P-201ENST00000517162 102 ntBASIC0.1□□□□□ -2.39
UPF3AQ9H1J1 U7.6-201ENST00000610841 64 ntBASIC0.1□□□□□ -2.39
UPF3AQ9H1J1 SNORA63.2-201ENST00000362603 126 ntBASIC0.09□□□□□ -2.4
UPF3AQ9H1J1 RNU6-1051P-201ENST00000365471 102 ntBASIC0.09□□□□□ -2.4
UPF3AQ9H1J1 RNU6-49P-201ENST00000384256 107 ntBASIC0.09□□□□□ -2.4
UPF3AQ9H1J1 U3.27-201ENST00000391237 200 ntBASIC0.09□□□□□ -2.4
UPF3AQ9H1J1 MIR1265-201ENST00000408444 86 ntBASIC0.09□□□□□ -2.4
UPF3AQ9H1J1 SNORD42B-201ENST00000458893 67 ntBASIC0.09□□□□□ -2.4
UPF3AQ9H1J1 MIR371B-201ENST00000638082 66 ntBASIC0.09□□□□□ -2.4
UPF3AQ9H1J1 RNU6-219P-201ENST00000364728 107 ntBASIC0.08□□□□□ -2.4
UPF3AQ9H1J1 RNU6-497P-201ENST00000365316 104 ntBASIC0.08□□□□□ -2.4
UPF3AQ9H1J1 Y_RNA.437-201ENST00000384113 113 ntBASIC0.08□□□□□ -2.4
UPF3AQ9H1J1 MIR516B1-201ENST00000385211 90 ntBASIC0.08□□□□□ -2.4
UPF3AQ9H1J1 MIR876-201ENST00000401147 81 ntBASIC0.08□□□□□ -2.4
UPF3AQ9H1J1 MIR4668-201ENST00000582284 70 ntBASIC0.08□□□□□ -2.4
UPF3AQ9H1J1 Y_RNA.558-201ENST00000384685 113 ntBASIC0.07□□□□□ -2.4
UPF3AQ9H1J1 Y_RNA.620-201ENST00000411009 88 ntBASIC0.07□□□□□ -2.4
UPF3AQ9H1J1 snoU13.17-201ENST00000458802 104 ntBASIC0.07□□□□□ -2.4
UPF3AQ9H1J1 RNU6-267P-201ENST00000516714 103 ntBASIC0.07□□□□□ -2.4
UPF3AQ9H1J1 SCARNA11.2-201ENST00000517183 154 ntBASIC0.07□□□□□ -2.4
UPF3AQ9H1J1 SNORD114-5-201ENST00000362928 70 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 RNU6-1131P-201ENST00000364955 107 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 Y_RNA.407-201ENST00000383986 113 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 MIR593-201ENST00000384856 100 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 MIR145-201ENST00000384967 88 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 MIR652-201ENST00000385278 98 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 MIR216B-201ENST00000390186 82 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 RNU6-402P-201ENST00000410678 103 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 MIR4796-201ENST00000580742 81 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 MIR4636-201ENST00000582271 80 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 RN7SL660P-201ENST00000614852 299 ntBASIC0.06□□□□□ -2.4
UPF3AQ9H1J1 RNU6-633P-201ENST00000362612 103 ntBASIC0.05□□□□□ -2.4
UPF3AQ9H1J1 RNU6-175P-201ENST00000516896 107 ntBASIC0.05□□□□□ -2.4
UPF3AQ9H1J1 RNU7-188P-201ENST00000517063 64 ntBASIC0.05□□□□□ -2.4
UPF3AQ9H1J1 MIR5589-201ENST00000579442 60 ntBASIC0.05□□□□□ -2.4
UPF3AQ9H1J1 uc_338.10-201ENST00000621872 182 ntBASIC0.05□□□□□ -2.4
UPF3AQ9H1J1 RNU6-652P-201ENST00000365488 107 ntBASIC0.04□□□□□ -2.4
UPF3AQ9H1J1 RNU6-154P-201ENST00000384306 106 ntBASIC0.04□□□□□ -2.4
UPF3AQ9H1J1 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
UPF3AQ9H1J1 RNU6-762P-201ENST00000517107 102 ntBASIC0.04□□□□□ -2.4
UPF3AQ9H1J1 AC084368.1-201ENST00000620935 65 ntBASIC0.04□□□□□ -2.4
UPF3AQ9H1J1 Y_RNA.185-201ENST00000363894 100 ntBASIC0.03□□□□□ -2.4
UPF3AQ9H1J1 MIR1236-201ENST00000408340 102 ntBASIC0.03□□□□□ -2.4
UPF3AQ9H1J1 RNU6-180P-201ENST00000516697 61 ntBASIC0.03□□□□□ -2.4
UPF3AQ9H1J1 RNU6-844P-201ENST00000517175 102 ntBASIC0.03□□□□□ -2.4
UPF3AQ9H1J1 MIR4667-201ENST00000578933 66 ntBASIC0.03□□□□□ -2.4
UPF3AQ9H1J1 RNU6-495P-201ENST00000362995 107 ntBASIC0.02□□□□□ -2.41
UPF3AQ9H1J1 MIR582-201ENST00000365731 98 ntBASIC0.02□□□□□ -2.41
UPF3AQ9H1J1 SNORD116-22-201ENST00000384430 92 ntBASIC0.02□□□□□ -2.41
UPF3AQ9H1J1 MIR519C-201ENST00000385053 87 ntBASIC0.02□□□□□ -2.41
UPF3AQ9H1J1 MIR610-201ENST00000385139 96 ntBASIC0.02□□□□□ -2.41
UPF3AQ9H1J1 SNORA75.1-201ENST00000391130 148 ntBASIC0.02□□□□□ -2.41
UPF3AQ9H1J1 MIR4290-201ENST00000583807 95 ntBASIC0.02□□□□□ -2.41
UPF3AQ9H1J1 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.01□□□□□ -2.41
UPF3AQ9H1J1 RNU6-824P-201ENST00000363724 104 ntBASIC0.01□□□□□ -2.41
UPF3AQ9H1J1 Y_RNA.220-201ENST00000364244 109 ntBASIC0.01□□□□□ -2.41
UPF3AQ9H1J1 RNU6-675P-201ENST00000384236 104 ntBASIC0.01□□□□□ -2.41
UPF3AQ9H1J1 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
UPF3AQ9H1J1 RNU6-1177P-201ENST00000391058 104 ntBASIC0.01□□□□□ -2.41
UPF3AQ9H1J1 Y_RNA.593-201ENST00000410292 98 ntBASIC0.01□□□□□ -2.41
UPF3AQ9H1J1 RNA5SP163-201ENST00000410304 99 ntBASIC0.01□□□□□ -2.41
UPF3AQ9H1J1 MIR4743-201ENST00000584576 69 ntBASIC0.01□□□□□ -2.41
UPF3AQ9H1J1 SNORD114-16-201ENST00000363044 70 ntBASIC0□□□□□ -2.41
UPF3AQ9H1J1 MIR106A-201ENST00000384870 81 ntBASIC0□□□□□ -2.41
UPF3AQ9H1J1 MTATP6P29-201ENST00000415057 132 ntBASIC0□□□□□ -2.41
UPF3AQ9H1J1 RNU7-165P-201ENST00000458864 60 ntBASIC0□□□□□ -2.41
UPF3AQ9H1J1 SCARNA17.3-201ENST00000516381 125 ntBASIC0□□□□□ -2.41
UPF3AQ9H1J1 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.01□□□□□ -2.41
UPF3AQ9H1J1 RNU6-1298P-201ENST00000362456 101 ntBASIC-0.01□□□□□ -2.41
UPF3AQ9H1J1 SNORA49-201ENST00000386157 136 ntBASIC-0.01□□□□□ -2.41
UPF3AQ9H1J1 RNY4P30-201ENST00000410216 95 ntBASIC-0.01□□□□□ -2.41
UPF3AQ9H1J1 MIR4802-201ENST00000581881 80 ntBASIC-0.01□□□□□ -2.41
UPF3AQ9H1J1 MIR6514-201ENST00000622549 70 ntBASIC-0.01□□□□□ -2.41
UPF3AQ9H1J1 MIR548BB-201ENST00000626714 66 ntBASIC-0.01□□□□□ -2.41
UPF3AQ9H1J1 RNA5SP98-201ENST00000363158 137 ntBASIC-0.02□□□□□ -2.41
UPF3AQ9H1J1 RNU6-382P-201ENST00000365181 106 ntBASIC-0.02□□□□□ -2.41
UPF3AQ9H1J1 RNU6-929P-201ENST00000384429 107 ntBASIC-0.02□□□□□ -2.41
UPF3AQ9H1J1 MIR548E-201ENST00000408287 88 ntBASIC-0.02□□□□□ -2.41
UPF3AQ9H1J1 AC097510.1-201ENST00000510945 133 ntBASIC-0.02□□□□□ -2.41
UPF3AQ9H1J1 SNORA40.17-201ENST00000517256 115 ntBASIC-0.02□□□□□ -2.41
UPF3AQ9H1J1 SNORD114-29-201ENST00000364819 70 ntBASIC-0.03□□□□□ -2.41
UPF3AQ9H1J1 RNY4P3-201ENST00000365254 95 ntBASIC-0.03□□□□□ -2.41
UPF3AQ9H1J1 MIR892B-201ENST00000401279 77 ntBASIC-0.03□□□□□ -2.41
UPF3AQ9H1J1 SNORD75.2-201ENST00000408784 58 ntBASIC-0.03□□□□□ -2.41
UPF3AQ9H1J1 RNU7-24P-201ENST00000458867 62 ntBASIC-0.03□□□□□ -2.41
UPF3AQ9H1J1 AC140658.3-201ENST00000567603 271 ntBASIC-0.03□□□□□ -2.41
UPF3AQ9H1J1 RNU5F-1-201ENST00000362507 117 ntBASIC-0.04□□□□□ -2.42
UPF3AQ9H1J1 RNU6-990P-201ENST00000364385 104 ntBASIC-0.04□□□□□ -2.42
UPF3AQ9H1J1 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.04□□□□□ -2.42
UPF3AQ9H1J1 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.04□□□□□ -2.42
UPF3AQ9H1J1 CR383656.4-201ENST00000546909 122 ntBASIC-0.04□□□□□ -2.42
UPF3AQ9H1J1 MIR5582-201ENST00000579697 68 ntBASIC-0.04□□□□□ -2.42
UPF3AQ9H1J1 AC145423.2-201ENST00000610631 239 ntBASIC-0.04□□□□□ -2.42
UPF3AQ9H1J1 MIR20A-201ENST00000362279 71 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 RNU6-624P-201ENST00000363411 107 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 RNU6-302P-201ENST00000365249 107 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 AC244090.1-201ENST00000441884 93 ntBASIC-0.05□□□□□ -2.42
UPF3AQ9H1J1 RNU7-159P-201ENST00000459284 62 ntBASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 178.8 ms