Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 Y_RNA.722-201ENST00000517279 114 ntBASIC1.5□□□□□ -2.17
NUCKS1Q9H1E3 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.5□□□□□ -2.17
NUCKS1Q9H1E3 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
NUCKS1Q9H1E3 MIR3612-201ENST00000579753 87 ntBASIC1.49□□□□□ -2.17
NUCKS1Q9H1E3 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
NUCKS1Q9H1E3 RNU6-939P-201ENST00000384634 107 ntBASIC1.48□□□□□ -2.17
NUCKS1Q9H1E3 AC021146.9-201ENST00000512503 156 ntBASIC1.48□□□□□ -2.17
NUCKS1Q9H1E3 AL162376.1-201ENST00000624117 175 ntBASIC1.47□□□□□ -2.17
NUCKS1Q9H1E3 U2.7-201ENST00000619197 100 ntBASIC1.46□□□□□ -2.18
NUCKS1Q9H1E3 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.46□□□□□ -2.18
NUCKS1Q9H1E3 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.45□□□□□ -2.18
NUCKS1Q9H1E3 MIR19B1-201ENST00000384829 87 ntBASIC1.45□□□□□ -2.18
NUCKS1Q9H1E3 RNU7-174P-201ENST00000516248 59 ntBASIC1.45□□□□□ -2.18
NUCKS1Q9H1E3 snoU13.31-201ENST00000607291 104 ntBASIC1.45□□□□□ -2.18
NUCKS1Q9H1E3 SNORA33.1-201ENST00000364957 130 ntBASIC1.44□□□□□ -2.18
NUCKS1Q9H1E3 RNU6-936P-201ENST00000384005 107 ntBASIC1.44□□□□□ -2.18
NUCKS1Q9H1E3 MIR517B-201ENST00000385102 67 ntBASIC1.44□□□□□ -2.18
NUCKS1Q9H1E3 Y_RNA.633-201ENST00000459107 95 ntBASIC1.44□□□□□ -2.18
NUCKS1Q9H1E3 SNORD124-201ENST00000459577 104 ntBASIC1.44□□□□□ -2.18
NUCKS1Q9H1E3 MIR4421-201ENST00000578133 69 ntBASIC1.44□□□□□ -2.18
NUCKS1Q9H1E3 MIR6828-201ENST00000636181 60 ntBASIC1.44□□□□□ -2.18
NUCKS1Q9H1E3 RNU6-698P-201ENST00000363523 107 ntBASIC1.43□□□□□ -2.18
NUCKS1Q9H1E3 RNU6-34P-201ENST00000364874 107 ntBASIC1.43□□□□□ -2.18
NUCKS1Q9H1E3 Y_RNA.338-201ENST00000365320 114 ntBASIC1.43□□□□□ -2.18
NUCKS1Q9H1E3 RNU6-808P-201ENST00000391233 108 ntBASIC1.43□□□□□ -2.18
NUCKS1Q9H1E3 MIR4498-201ENST00000577599 66 ntBASIC1.43□□□□□ -2.18
NUCKS1Q9H1E3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.42□□□□□ -2.18
NUCKS1Q9H1E3 SNORA15B-2-201ENST00000384058 135 ntBASIC1.42□□□□□ -2.18
NUCKS1Q9H1E3 SNORA15B-1-201ENST00000384334 135 ntBASIC1.42□□□□□ -2.18
NUCKS1Q9H1E3 MIR652-201ENST00000385278 98 ntBASIC1.42□□□□□ -2.18
NUCKS1Q9H1E3 SNORD113-2-201ENST00000391082 72 ntBASIC1.42□□□□□ -2.18
NUCKS1Q9H1E3 SCARNA17.3-201ENST00000516381 125 ntBASIC1.42□□□□□ -2.18
NUCKS1Q9H1E3 AC068338.1-201ENST00000565567 176 ntBASIC1.42□□□□□ -2.18
NUCKS1Q9H1E3 U4.4-201ENST00000620626 117 ntBASIC1.42□□□□□ -2.18
NUCKS1Q9H1E3 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
NUCKS1Q9H1E3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
NUCKS1Q9H1E3 Y_RNA.125-201ENST00000363371 111 ntBASIC1.41□□□□□ -2.18
NUCKS1Q9H1E3 SNORA63.6-201ENST00000364921 119 ntBASIC1.41□□□□□ -2.18
NUCKS1Q9H1E3 Y_RNA.407-201ENST00000383986 113 ntBASIC1.41□□□□□ -2.18
NUCKS1Q9H1E3 MIR200A-201ENST00000384875 90 ntBASIC1.41□□□□□ -2.18
NUCKS1Q9H1E3 MIR548AE1-201ENST00000583292 70 ntBASIC1.41□□□□□ -2.18
NUCKS1Q9H1E3 uc_338.10-201ENST00000621872 182 ntBASIC1.41□□□□□ -2.18
NUCKS1Q9H1E3 MIR582-201ENST00000365731 98 ntBASIC1.4□□□□□ -2.19
NUCKS1Q9H1E3 RNA5SP227-201ENST00000516184 113 ntBASIC1.4□□□□□ -2.19
NUCKS1Q9H1E3 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
NUCKS1Q9H1E3 SNORA36.1-201ENST00000363424 132 ntBASIC1.39□□□□□ -2.19
NUCKS1Q9H1E3 RNU6-1184P-201ENST00000384588 108 ntBASIC1.39□□□□□ -2.19
NUCKS1Q9H1E3 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.39□□□□□ -2.19
NUCKS1Q9H1E3 MIR548E-201ENST00000408287 88 ntBASIC1.38□□□□□ -2.19
NUCKS1Q9H1E3 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.38□□□□□ -2.19
NUCKS1Q9H1E3 AC025627.3-201ENST00000582078 182 ntBASIC1.38□□□□□ -2.19
NUCKS1Q9H1E3 MIR4473-201ENST00000583731 91 ntBASIC1.38□□□□□ -2.19
NUCKS1Q9H1E3 AC006210.1-201ENST00000424882 111 ntBASIC1.37□□□□□ -2.19
NUCKS1Q9H1E3 MIR18A-201ENST00000362310 71 ntBASIC1.36□□□□□ -2.19
NUCKS1Q9H1E3 RNU6-1312P-201ENST00000362425 108 ntBASIC1.36□□□□□ -2.19
NUCKS1Q9H1E3 MIR618-201ENST00000385287 98 ntBASIC1.36□□□□□ -2.19
NUCKS1Q9H1E3 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.36□□□□□ -2.19
NUCKS1Q9H1E3 MIR3660-201ENST00000584845 100 ntBASIC1.36□□□□□ -2.19
NUCKS1Q9H1E3 SNORD110-201ENST00000408189 75 ntBASIC1.35□□□□□ -2.19
NUCKS1Q9H1E3 RNU6-1053P-201ENST00000515930 101 ntBASIC1.35□□□□□ -2.19
NUCKS1Q9H1E3 RNA5SP268-201ENST00000516828 124 ntBASIC1.35□□□□□ -2.19
NUCKS1Q9H1E3 AL353770.2-201ENST00000620024 78 ntBASIC1.35□□□□□ -2.19
NUCKS1Q9H1E3 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.34□□□□□ -2.19
NUCKS1Q9H1E3 RNU6-321P-201ENST00000410912 106 ntBASIC1.34□□□□□ -2.19
NUCKS1Q9H1E3 RNA5SP255-201ENST00000516370 107 ntBASIC1.34□□□□□ -2.19
NUCKS1Q9H1E3 AC011195.1-201ENST00000578177 177 ntBASIC1.34□□□□□ -2.19
NUCKS1Q9H1E3 SNORA25.8-201ENST00000364831 128 ntBASIC1.33□□□□□ -2.2
NUCKS1Q9H1E3 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
NUCKS1Q9H1E3 SNORD99-201ENST00000408612 74 ntBASIC1.33□□□□□ -2.2
NUCKS1Q9H1E3 MIR7107-201ENST00000611489 80 ntBASIC1.33□□□□□ -2.2
NUCKS1Q9H1E3 Y_RNA.246-201ENST00000364495 108 ntBASIC1.32□□□□□ -2.2
NUCKS1Q9H1E3 Y_RNA.327-201ENST00000365201 102 ntBASIC1.32□□□□□ -2.2
NUCKS1Q9H1E3 RNA5SP94-201ENST00000516917 108 ntBASIC1.32□□□□□ -2.2
NUCKS1Q9H1E3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
NUCKS1Q9H1E3 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.31□□□□□ -2.2
NUCKS1Q9H1E3 SNORD114-24-201ENST00000365029 72 ntBASIC1.31□□□□□ -2.2
NUCKS1Q9H1E3 Y_RNA.325-201ENST00000365171 122 ntBASIC1.31□□□□□ -2.2
NUCKS1Q9H1E3 RNU6-520P-201ENST00000384717 104 ntBASIC1.31□□□□□ -2.2
NUCKS1Q9H1E3 SNORA41B-201ENST00000384785 128 ntBASIC1.31□□□□□ -2.2
NUCKS1Q9H1E3 OR2A41P-201ENST00000473586 105 ntBASIC1.31□□□□□ -2.2
NUCKS1Q9H1E3 TRMT112P2-201ENST00000512910 132 ntBASIC1.31□□□□□ -2.2
NUCKS1Q9H1E3 SNORA70.25-201ENST00000612741 95 ntBASIC1.31□□□□□ -2.2
NUCKS1Q9H1E3 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.3□□□□□ -2.2
NUCKS1Q9H1E3 RNU1-124P-201ENST00000363861 145 ntBASIC1.29□□□□□ -2.2
NUCKS1Q9H1E3 RNU4-45P-201ENST00000365469 141 ntBASIC1.29□□□□□ -2.2
NUCKS1Q9H1E3 RNU6-1246P-201ENST00000391064 107 ntBASIC1.29□□□□□ -2.2
NUCKS1Q9H1E3 RNA5SP404-201ENST00000517118 132 ntBASIC1.29□□□□□ -2.2
NUCKS1Q9H1E3 CYP3A54P-201ENST00000566950 75 ntBASIC1.29□□□□□ -2.2
NUCKS1Q9H1E3 SNORA9.1-201ENST00000362412 131 ntBASIC1.28□□□□□ -2.2
NUCKS1Q9H1E3 MIR548AD-201ENST00000584780 82 ntBASIC1.28□□□□□ -2.2
NUCKS1Q9H1E3 RNU6-392P-201ENST00000364926 101 ntBASIC1.27□□□□□ -2.21
NUCKS1Q9H1E3 MIR516B1-201ENST00000385211 90 ntBASIC1.27□□□□□ -2.21
NUCKS1Q9H1E3 MIR4752-201ENST00000579672 72 ntBASIC1.27□□□□□ -2.21
NUCKS1Q9H1E3 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC1.27□□□□□ -2.21
NUCKS1Q9H1E3 AC090617.8-201ENST00000623339 167 ntBASIC1.27□□□□□ -2.21
NUCKS1Q9H1E3 U6.96-201ENST00000636425 70 ntBASIC1.27□□□□□ -2.21
NUCKS1Q9H1E3 Y_RNA.164-201ENST00000363709 102 ntBASIC1.25□□□□□ -2.21
NUCKS1Q9H1E3 HMGN2P22-201ENST00000427588 175 ntBASIC1.25□□□□□ -2.21
NUCKS1Q9H1E3 MIR6078-201ENST00000611069 100 ntBASIC1.25□□□□□ -2.21
NUCKS1Q9H1E3 MIR1285-1-201ENST00000408593 84 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms