Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 RNU6-617P-201ENST00000516147 107 ntBASIC0.62□□□□□ -2.31
SOX9P48436 RNU6-473P-201ENST00000516164 107 ntBASIC0.62□□□□□ -2.31
SOX9P48436 RNU6-1049P-201ENST00000516414 107 ntBASIC0.62□□□□□ -2.31
SOX9P48436 SNORA70.25-201ENST00000612741 95 ntBASIC0.62□□□□□ -2.31
SOX9P48436 RNA5SP173-201ENST00000364857 136 ntBASIC0.61□□□□□ -2.31
SOX9P48436 Y_RNA.388-201ENST00000383919 113 ntBASIC0.61□□□□□ -2.31
SOX9P48436 RNU6-129P-201ENST00000391022 107 ntBASIC0.61□□□□□ -2.31
SOX9P48436 RNU6-380P-201ENST00000410207 107 ntBASIC0.61□□□□□ -2.31
SOX9P48436 SNORA68.3-201ENST00000515906 83 ntBASIC0.61□□□□□ -2.31
SOX9P48436 MIR5087-201ENST00000635826 76 ntBASIC0.61□□□□□ -2.31
SOX9P48436 RNU6-624P-201ENST00000363411 107 ntBASIC0.6□□□□□ -2.31
SOX9P48436 Y_RNA.437-201ENST00000384113 113 ntBASIC0.6□□□□□ -2.31
SOX9P48436 AC097510.1-201ENST00000510945 133 ntBASIC0.6□□□□□ -2.31
SOX9P48436 RNU6-1108P-201ENST00000516308 104 ntBASIC0.6□□□□□ -2.31
SOX9P48436 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.6□□□□□ -2.31
SOX9P48436 RNU6-161P-201ENST00000363051 106 ntBASIC0.59□□□□□ -2.31
SOX9P48436 MIR760-201ENST00000390220 80 ntBASIC0.59□□□□□ -2.31
SOX9P48436 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.59□□□□□ -2.31
SOX9P48436 SNORD44.1-201ENST00000363202 61 ntBASIC0.58□□□□□ -2.32
SOX9P48436 RNU5B-6P-201ENST00000516765 68 ntBASIC0.58□□□□□ -2.32
SOX9P48436 MIRLET7D-201ENST00000362263 87 ntBASIC0.57□□□□□ -2.32
SOX9P48436 SNORA24B-201ENST00000384176 131 ntBASIC0.57□□□□□ -2.32
SOX9P48436 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
SOX9P48436 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.57□□□□□ -2.32
SOX9P48436 snoU13.17-201ENST00000458802 104 ntBASIC0.57□□□□□ -2.32
SOX9P48436 RNU7-129P-201ENST00000516128 62 ntBASIC0.57□□□□□ -2.32
SOX9P48436 RNU6-557P-201ENST00000516842 110 ntBASIC0.57□□□□□ -2.32
SOX9P48436 MIR4473-201ENST00000583731 91 ntBASIC0.57□□□□□ -2.32
SOX9P48436 MIR3202-2-201ENST00000635980 79 ntBASIC0.57□□□□□ -2.32
SOX9P48436 RNU6-652P-201ENST00000365488 107 ntBASIC0.56□□□□□ -2.32
SOX9P48436 RNU6-592P-201ENST00000411333 103 ntBASIC0.56□□□□□ -2.32
SOX9P48436 RNA5SP476-201ENST00000516613 103 ntBASIC0.56□□□□□ -2.32
SOX9P48436 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.56□□□□□ -2.32
SOX9P48436 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.55□□□□□ -2.32
SOX9P48436 RNU6-681P-201ENST00000364012 104 ntBASIC0.55□□□□□ -2.32
SOX9P48436 RNU6-686P-201ENST00000364839 107 ntBASIC0.55□□□□□ -2.32
SOX9P48436 Y_RNA.316-201ENST00000365118 111 ntBASIC0.55□□□□□ -2.32
SOX9P48436 RNU6-54P-201ENST00000365563 107 ntBASIC0.55□□□□□ -2.32
SOX9P48436 MIR4666B-201ENST00000578142 81 ntBASIC0.55□□□□□ -2.32
SOX9P48436 MIR6755-201ENST00000619993 66 ntBASIC0.55□□□□□ -2.32
SOX9P48436 SNORD114-4-201ENST00000363962 75 ntBASIC0.54□□□□□ -2.32
SOX9P48436 RNU6-573P-201ENST00000383938 106 ntBASIC0.54□□□□□ -2.32
SOX9P48436 Y_RNA.407-201ENST00000383986 113 ntBASIC0.54□□□□□ -2.32
SOX9P48436 RNU6-35P-201ENST00000384530 107 ntBASIC0.54□□□□□ -2.32
SOX9P48436 MIR92A1-201ENST00000385233 78 ntBASIC0.54□□□□□ -2.32
SOX9P48436 RNU1-29P-201ENST00000606574 126 ntBASIC0.54□□□□□ -2.32
SOX9P48436 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
SOX9P48436 AC090625.1-201ENST00000357130 210 ntBASIC0.53□□□□□ -2.32
SOX9P48436 MIR103A1-201ENST00000362165 78 ntBASIC0.53□□□□□ -2.32
SOX9P48436 Y_RNA.219-201ENST00000364232 113 ntBASIC0.53□□□□□ -2.32
SOX9P48436 Y_RNA.371-201ENST00000365591 113 ntBASIC0.53□□□□□ -2.32
SOX9P48436 AC073261.1-201ENST00000429409 121 ntBASIC0.53□□□□□ -2.32
SOX9P48436 uc_338.10-201ENST00000621872 182 ntBASIC0.53□□□□□ -2.32
SOX9P48436 MIR4773-1-201ENST00000637203 78 ntBASIC0.53□□□□□ -2.32
SOX9P48436 Y_RNA.12-201ENST00000362393 112 ntBASIC0.52□□□□□ -2.33
SOX9P48436 SNORA9.1-201ENST00000362412 131 ntBASIC0.52□□□□□ -2.33
SOX9P48436 RNA5SP128-201ENST00000365305 116 ntBASIC0.52□□□□□ -2.33
SOX9P48436 RNU6-274P-201ENST00000459566 107 ntBASIC0.52□□□□□ -2.33
SOX9P48436 HAR1A.1-201ENST00000459583 118 ntBASIC0.52□□□□□ -2.33
SOX9P48436 RNU6-315P-201ENST00000362666 107 ntBASIC0.51□□□□□ -2.33
SOX9P48436 Y_RNA.125-201ENST00000363371 111 ntBASIC0.51□□□□□ -2.33
SOX9P48436 SNORD75.2-201ENST00000408784 58 ntBASIC0.51□□□□□ -2.33
SOX9P48436 AL157398.1-201ENST00000452981 186 ntBASIC0.51□□□□□ -2.33
SOX9P48436 SNORA62.5-201ENST00000516634 120 ntBASIC0.51□□□□□ -2.33
SOX9P48436 YWHAEP3-201ENST00000582767 121 ntBASIC0.51□□□□□ -2.33
SOX9P48436 AC243829.6-201ENST00000612652 106 ntBASIC0.51□□□□□ -2.33
SOX9P48436 AC114737.2-201ENST00000421583 173 ntBASIC0.5□□□□□ -2.33
SOX9P48436 HMGN2P22-201ENST00000427588 175 ntBASIC0.5□□□□□ -2.33
SOX9P48436 MIR1245B-201ENST00000636115 69 ntBASIC0.5□□□□□ -2.33
SOX9P48436 RNU6-824P-201ENST00000363724 104 ntBASIC0.49□□□□□ -2.33
SOX9P48436 U6.81-201ENST00000612550 106 ntBASIC0.49□□□□□ -2.33
SOX9P48436 RNU6-1094P-201ENST00000362416 104 ntBASIC0.48□□□□□ -2.33
SOX9P48436 RNU6-495P-201ENST00000362995 107 ntBASIC0.48□□□□□ -2.33
SOX9P48436 RNU6-478P-201ENST00000363904 110 ntBASIC0.48□□□□□ -2.33
SOX9P48436 RNU6-382P-201ENST00000365181 106 ntBASIC0.48□□□□□ -2.33
SOX9P48436 RNU7-24P-201ENST00000458867 62 ntBASIC0.48□□□□□ -2.33
SOX9P48436 MIR2909-201ENST00000617113 69 ntBASIC0.48□□□□□ -2.33
SOX9P48436 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.47□□□□□ -2.33
SOX9P48436 MIRLET7A1-201ENST00000362295 80 ntBASIC0.47□□□□□ -2.33
SOX9P48436 RNU6-340P-201ENST00000364005 107 ntBASIC0.47□□□□□ -2.33
SOX9P48436 RNU6-1327P-201ENST00000365302 105 ntBASIC0.47□□□□□ -2.33
SOX9P48436 VTRNA1-3-201ENST00000365645 89 ntBASIC0.47□□□□□ -2.33
SOX9P48436 RNU6-1124P-201ENST00000384169 107 ntBASIC0.47□□□□□ -2.33
SOX9P48436 Y_RNA.606-201ENST00000410579 103 ntBASIC0.47□□□□□ -2.33
SOX9P48436 Y_RNA.313-201ENST00000365095 103 ntBASIC0.46□□□□□ -2.34
SOX9P48436 RNU6-1232P-201ENST00000516299 86 ntBASIC0.46□□□□□ -2.34
SOX9P48436 RNU6-807P-201ENST00000516805 107 ntBASIC0.46□□□□□ -2.34
SOX9P48436 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.46□□□□□ -2.34
SOX9P48436 RNU6-154P-201ENST00000384306 106 ntBASIC0.45□□□□□ -2.34
SOX9P48436 MIR516B1-201ENST00000385211 90 ntBASIC0.45□□□□□ -2.34
SOX9P48436 MIR501-201ENST00000390204 84 ntBASIC0.45□□□□□ -2.34
SOX9P48436 AL691482.2-201ENST00000457453 84 ntBASIC0.45□□□□□ -2.34
SOX9P48436 RNU6-303P-201ENST00000517091 106 ntBASIC0.45□□□□□ -2.34
SOX9P48436 MIR4514-201ENST00000581410 57 ntBASIC0.45□□□□□ -2.34
SOX9P48436 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.45□□□□□ -2.34
SOX9P48436 MIR499B-201ENST00000636498 73 ntBASIC0.45□□□□□ -2.34
SOX9P48436 SNORD78.1-201ENST00000390866 65 ntBASIC0.44□□□□□ -2.34
SOX9P48436 RNA5SP63-201ENST00000391225 112 ntBASIC0.44□□□□□ -2.34
SOX9P48436 RNA5SP285-201ENST00000516619 119 ntBASIC0.44□□□□□ -2.34
SOX9P48436 MIR4712-201ENST00000583750 82 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 238 ms