Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNA5SP227-201ENST00000516184 113 ntBASIC1.11□□□□□ -2.23
LIG1P18858 RNU6-881P-201ENST00000516813 102 ntBASIC1.11□□□□□ -2.23
LIG1P18858 RNA5SP94-201ENST00000516917 108 ntBASIC1.11□□□□□ -2.23
LIG1P18858 AC069503.3-201ENST00000618674 145 ntBASIC1.11□□□□□ -2.23
LIG1P18858 SNORD113.1-201ENST00000363280 73 ntBASIC1.1□□□□□ -2.23
LIG1P18858 SNORD114-22-201ENST00000365423 72 ntBASIC1.1□□□□□ -2.23
LIG1P18858 Y_RNA.386-201ENST00000383913 105 ntBASIC1.1□□□□□ -2.23
LIG1P18858 MIR489-201ENST00000384923 84 ntBASIC1.1□□□□□ -2.23
LIG1P18858 RNA5SP484-201ENST00000458857 111 ntBASIC1.1□□□□□ -2.23
LIG1P18858 RNA5SP268-201ENST00000516828 124 ntBASIC1.1□□□□□ -2.23
LIG1P18858 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
LIG1P18858 RNU6-260P-201ENST00000384092 107 ntBASIC1.09□□□□□ -2.23
LIG1P18858 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
LIG1P18858 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.09□□□□□ -2.23
LIG1P18858 AC073869.9-201ENST00000641610 120 ntBASIC1.09□□□□□ -2.23
LIG1P18858 RNU6-800P-201ENST00000384473 103 ntBASIC1.08□□□□□ -2.24
LIG1P18858 PSMC1P5-201ENST00000512850 177 ntBASIC1.08□□□□□ -2.24
LIG1P18858 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.08□□□□□ -2.24
LIG1P18858 RNU6-1216P-201ENST00000362590 107 ntBASIC1.07□□□□□ -2.24
LIG1P18858 SNORD114-4-201ENST00000363962 75 ntBASIC1.07□□□□□ -2.24
LIG1P18858 MIR7-2-201ENST00000384970 110 ntBASIC1.07□□□□□ -2.24
LIG1P18858 RNA5SP222-201ENST00000411039 105 ntBASIC1.07□□□□□ -2.24
LIG1P18858 MIR3657-201ENST00000584818 117 ntBASIC1.07□□□□□ -2.24
LIG1P18858 MIR6767-201ENST00000637302 66 ntBASIC1.07□□□□□ -2.24
LIG1P18858 MIR203A-201ENST00000384836 110 ntBASIC1.06□□□□□ -2.24
LIG1P18858 MIR7107-201ENST00000611489 80 ntBASIC1.06□□□□□ -2.24
LIG1P18858 SNORD116-24-201ENST00000384549 92 ntBASIC1.05□□□□□ -2.24
LIG1P18858 RNU5B-6P-201ENST00000516765 68 ntBASIC1.05□□□□□ -2.24
LIG1P18858 MIR4698-201ENST00000577795 80 ntBASIC1.05□□□□□ -2.24
LIG1P18858 SNORA2.1-201ENST00000363089 137 ntBASIC1.04□□□□□ -2.24
LIG1P18858 MIR520E-201ENST00000384867 87 ntBASIC1.04□□□□□ -2.24
LIG1P18858 AC125388.1-201ENST00000459631 156 ntBASIC1.04□□□□□ -2.24
LIG1P18858 AC018659.1-201ENST00000551083 169 ntBASIC1.04□□□□□ -2.24
LIG1P18858 MIR608-201ENST00000384820 100 ntBASIC1.03□□□□□ -2.24
LIG1P18858 RNU6-630P-201ENST00000391258 106 ntBASIC1.03□□□□□ -2.24
LIG1P18858 RPS29P1-201ENST00000465274 159 ntBASIC1.03□□□□□ -2.24
LIG1P18858 AC005520.4-201ENST00000604337 90 ntBASIC1.03□□□□□ -2.24
LIG1P18858 RNU1-93P-201ENST00000364704 169 ntBASIC1.02□□□□□ -2.25
LIG1P18858 Y_RNA.340-201ENST00000365330 92 ntBASIC1.02□□□□□ -2.25
LIG1P18858 RNU6-471P-201ENST00000383944 106 ntBASIC1.02□□□□□ -2.25
LIG1P18858 Y_RNA.443-201ENST00000384135 111 ntBASIC1.02□□□□□ -2.25
LIG1P18858 MIR1265-201ENST00000408444 86 ntBASIC1.02□□□□□ -2.25
LIG1P18858 SNORA40.17-201ENST00000517256 115 ntBASIC1.02□□□□□ -2.25
LIG1P18858 SNORA25.4-201ENST00000363666 124 ntBASIC1.01□□□□□ -2.25
LIG1P18858 MIR3973-201ENST00000579824 107 ntBASIC1.01□□□□□ -2.25
LIG1P18858 RNU6-982P-201ENST00000516216 102 ntBASIC1□□□□□ -2.25
LIG1P18858 MIR6857-201ENST00000613267 93 ntBASIC1□□□□□ -2.25
LIG1P18858 RNU6-990P-201ENST00000364385 104 ntBASIC0.99□□□□□ -2.25
LIG1P18858 SNORD110-201ENST00000408189 75 ntBASIC0.99□□□□□ -2.25
LIG1P18858 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.99□□□□□ -2.25
LIG1P18858 AC006210.1-201ENST00000424882 111 ntBASIC0.99□□□□□ -2.25
LIG1P18858 MTND4LP1-201ENST00000446263 157 ntBASIC0.99□□□□□ -2.25
LIG1P18858 RNU6-1223P-201ENST00000517124 104 ntBASIC0.99□□□□□ -2.25
LIG1P18858 MIR151B-201ENST00000584249 96 ntBASIC0.99□□□□□ -2.25
LIG1P18858 MIR6515-201ENST00000619843 57 ntBASIC0.99□□□□□ -2.25
LIG1P18858 Y_RNA.250-201ENST00000364542 110 ntBASIC0.98□□□□□ -2.25
LIG1P18858 RNA5SP517-201ENST00000364724 117 ntBASIC0.98□□□□□ -2.25
LIG1P18858 Y_RNA.407-201ENST00000383986 113 ntBASIC0.98□□□□□ -2.25
LIG1P18858 MIR140-201ENST00000385282 100 ntBASIC0.98□□□□□ -2.25
LIG1P18858 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.98□□□□□ -2.25
LIG1P18858 MIR4653-201ENST00000585107 83 ntBASIC0.98□□□□□ -2.25
LIG1P18858 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.98□□□□□ -2.25
LIG1P18858 MIR6739-201ENST00000622461 75 ntBASIC0.98□□□□□ -2.25
LIG1P18858 RNY1P8-201ENST00000383970 114 ntBASIC0.97□□□□□ -2.25
LIG1P18858 SNORA36.2-201ENST00000384004 127 ntBASIC0.97□□□□□ -2.25
LIG1P18858 MIR532-201ENST00000385025 91 ntBASIC0.97□□□□□ -2.25
LIG1P18858 MIR146A-201ENST00000385201 99 ntBASIC0.97□□□□□ -2.25
LIG1P18858 MIR5706-201ENST00000579841 80 ntBASIC0.97□□□□□ -2.25
LIG1P18858 Y_RNA.205-201ENST00000364128 113 ntBASIC0.96□□□□□ -2.26
LIG1P18858 MIR6788-201ENST00000618842 66 ntBASIC0.96□□□□□ -2.26
LIG1P18858 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.95□□□□□ -2.26
LIG1P18858 MIR373-201ENST00000362273 69 ntBASIC0.95□□□□□ -2.26
LIG1P18858 RNU6-645P-201ENST00000364649 106 ntBASIC0.95□□□□□ -2.26
LIG1P18858 RNU6-110P-201ENST00000384508 104 ntBASIC0.95□□□□□ -2.26
LIG1P18858 SCARNA17.3-201ENST00000516381 125 ntBASIC0.95□□□□□ -2.26
LIG1P18858 SNORA70.25-201ENST00000612741 95 ntBASIC0.95□□□□□ -2.26
LIG1P18858 SNORD118-201ENST00000363593 134 ntBASIC0.94□□□□□ -2.26
LIG1P18858 SNORD114-2-201ENST00000363953 78 ntBASIC0.94□□□□□ -2.26
LIG1P18858 RNU6-668P-201ENST00000364180 107 ntBASIC0.94□□□□□ -2.26
LIG1P18858 MIR652-201ENST00000385278 98 ntBASIC0.94□□□□□ -2.26
LIG1P18858 RNU6-351P-201ENST00000516097 100 ntBASIC0.94□□□□□ -2.26
LIG1P18858 RNU1-29P-201ENST00000606574 126 ntBASIC0.94□□□□□ -2.26
LIG1P18858 AC092634.7-201ENST00000621022 103 ntBASIC0.94□□□□□ -2.26
LIG1P18858 RNA5SP147-201ENST00000516493 109 ntBASIC0.93□□□□□ -2.26
LIG1P18858 RNA5SP480-201ENST00000516840 109 ntBASIC0.93□□□□□ -2.26
LIG1P18858 MIR598-201ENST00000384868 97 ntBASIC0.92□□□□□ -2.26
LIG1P18858 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.92□□□□□ -2.26
LIG1P18858 SNORA40.8-201ENST00000411034 126 ntBASIC0.92□□□□□ -2.26
LIG1P18858 RNU6-656P-201ENST00000516785 107 ntBASIC0.92□□□□□ -2.26
LIG1P18858 MIR4752-201ENST00000579672 72 ntBASIC0.92□□□□□ -2.26
LIG1P18858 MIR548AE1-201ENST00000583292 70 ntBASIC0.92□□□□□ -2.26
LIG1P18858 AC022709.1-201ENST00000615967 87 ntBASIC0.92□□□□□ -2.26
LIG1P18858 MIR548J-201ENST00000408833 112 ntBASIC0.91□□□□□ -2.26
LIG1P18858 AC069271.1-201ENST00000445577 156 ntBASIC0.91□□□□□ -2.26
LIG1P18858 MIR4511-201ENST00000582784 87 ntBASIC0.91□□□□□ -2.26
LIG1P18858 MIR4473-201ENST00000583731 91 ntBASIC0.91□□□□□ -2.26
LIG1P18858 uc_338.10-201ENST00000621872 182 ntBASIC0.91□□□□□ -2.26
LIG1P18858 AC103706.3-201ENST00000636297 85 ntBASIC0.91□□□□□ -2.26
LIG1P18858 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
LIG1P18858 Y_RNA.633-201ENST00000459107 95 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms