Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MIR577-201ENST00000385196 96 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 MIR548U-201ENST00000390728 81 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 SNORD75.2-201ENST00000408784 58 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 snoU83B.1-201ENST00000517136 88 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 AL513043.2-201ENST00000573941 143 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 MIR3064-201ENST00000581130 66 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 AC008737.2-201ENST00000599446 118 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 U6.96-201ENST00000636425 70 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 RNU6-208P-201ENST00000362431 107 ntBASIC-1.19□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.19□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.274-201ENST00000364714 101 ntBASIC-1.19□□□□□ -2.6
VCX3AQ9NNX9 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.19□□□□□ -2.6
VCX3AQ9NNX9 SNORA81.3-201ENST00000517283 198 ntBASIC-1.19□□□□□ -2.6
VCX3AQ9NNX9 MIR4464-201ENST00000580818 92 ntBASIC-1.19□□□□□ -2.6
VCX3AQ9NNX9 AC062037.2-201ENST00000610137 73 ntBASIC-1.19□□□□□ -2.6
VCX3AQ9NNX9 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.19□□□□□ -2.6
VCX3AQ9NNX9 RNU6-151P-201ENST00000364158 107 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 MIR606-201ENST00000384851 96 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 MTCYBP9-201ENST00000431021 303 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 AL158147.1-201ENST00000443970 75 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 RNU7-24P-201ENST00000458867 62 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 MIR4694-201ENST00000578534 80 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 AC104996.3-201ENST00000590718 94 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 AL353803.5-201ENST00000599815 141 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 AC090617.8-201ENST00000623339 167 ntBASIC-1.2□□□□□ -2.6
VCX3AQ9NNX9 RNU6-867P-201ENST00000364956 107 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.644-201ENST00000459006 113 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.659-201ENST00000515994 113 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 AC068339.1-201ENST00000526965 141 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 MIR7111-201ENST00000619751 72 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 AP001340.1-201ENST00000624405 217 ntBASIC-1.21□□□□□ -2.6
VCX3AQ9NNX9 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.22□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.22□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.22□□□□□ -2.6
VCX3AQ9NNX9 MIR548A1-201ENST00000385041 97 ntBASIC-1.22□□□□□ -2.6
VCX3AQ9NNX9 MIR513C-201ENST00000401352 84 ntBASIC-1.22□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.22□□□□□ -2.6
VCX3AQ9NNX9 RNU6-797P-201ENST00000363101 109 ntBASIC-1.23□□□□□ -2.61
VCX3AQ9NNX9 RNU6-832P-201ENST00000363319 107 ntBASIC-1.23□□□□□ -2.61
VCX3AQ9NNX9 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.23□□□□□ -2.61
VCX3AQ9NNX9 MIR7-2-201ENST00000384970 110 ntBASIC-1.23□□□□□ -2.61
VCX3AQ9NNX9 MIR1302-3-201ENST00000408128 138 ntBASIC-1.23□□□□□ -2.61
VCX3AQ9NNX9 Y_RNA.681-201ENST00000516445 113 ntBASIC-1.23□□□□□ -2.61
VCX3AQ9NNX9 MIR378F-201ENST00000578143 78 ntBASIC-1.23□□□□□ -2.61
VCX3AQ9NNX9 AC025166.1-201ENST00000612411 163 ntBASIC-1.23□□□□□ -2.61
VCX3AQ9NNX9 AL445584.3-201ENST00000617173 78 ntBASIC-1.23□□□□□ -2.61
VCX3AQ9NNX9 Y_RNA.30-201ENST00000362572 97 ntBASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 MIR568-201ENST00000385036 95 ntBASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 RNA5SP25-201ENST00000410815 110 ntBASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 RNY1P9-201ENST00000532431 109 ntBASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 U7.2-201ENST00000607576 63 ntBASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 MIR6888-201ENST00000621977 67 ntBASIC-1.24□□□□□ -2.61
VCX3AQ9NNX9 RNY3P2-201ENST00000362918 102 ntBASIC-1.25□□□□□ -2.61
VCX3AQ9NNX9 Y_RNA.297-201ENST00000364950 91 ntBASIC-1.25□□□□□ -2.61
VCX3AQ9NNX9 RNU6-738P-201ENST00000384531 106 ntBASIC-1.25□□□□□ -2.61
VCX3AQ9NNX9 RNU6-861P-201ENST00000516745 106 ntBASIC-1.25□□□□□ -2.61
VCX3AQ9NNX9 Y_RNA.307-201ENST00000365022 117 ntBASIC-1.26□□□□□ -2.61
VCX3AQ9NNX9 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.26□□□□□ -2.61
VCX3AQ9NNX9 SNORD58C-201ENST00000365223 64 ntBASIC-1.26□□□□□ -2.61
VCX3AQ9NNX9 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.26□□□□□ -2.61
VCX3AQ9NNX9 RNU6-644P-201ENST00000391155 98 ntBASIC-1.26□□□□□ -2.61
VCX3AQ9NNX9 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.26□□□□□ -2.61
VCX3AQ9NNX9 MIR548AX-201ENST00000580117 73 ntBASIC-1.26□□□□□ -2.61
VCX3AQ9NNX9 MIR4439-201ENST00000583746 80 ntBASIC-1.26□□□□□ -2.61
VCX3AQ9NNX9 RNU6-682P-201ENST00000363843 106 ntBASIC-1.27□□□□□ -2.61
VCX3AQ9NNX9 RNY4P3-201ENST00000365254 95 ntBASIC-1.27□□□□□ -2.61
VCX3AQ9NNX9 Y_RNA.466-201ENST00000384294 113 ntBASIC-1.27□□□□□ -2.61
VCX3AQ9NNX9 snoU13.17-201ENST00000458802 104 ntBASIC-1.27□□□□□ -2.61
VCX3AQ9NNX9 SNORD4B-201ENST00000459083 72 ntBASIC-1.27□□□□□ -2.61
VCX3AQ9NNX9 RNA5SP470-201ENST00000516463 106 ntBASIC-1.27□□□□□ -2.61
VCX3AQ9NNX9 RNU6-62P-201ENST00000516526 102 ntBASIC-1.27□□□□□ -2.61
VCX3AQ9NNX9 AC006254.2-201ENST00000603259 279 ntBASIC-1.27□□□□□ -2.61
VCX3AQ9NNX9 AL035470.1-201ENST00000622571 220 ntBASIC-1.27□□□□□ -2.61
VCX3AQ9NNX9 SNORA33.1-201ENST00000364957 130 ntBASIC-1.28□□□□□ -2.61
VCX3AQ9NNX9 RNU6-382P-201ENST00000365181 106 ntBASIC-1.28□□□□□ -2.61
VCX3AQ9NNX9 RNA5SP292-201ENST00000390974 118 ntBASIC-1.28□□□□□ -2.61
VCX3AQ9NNX9 MIR1265-201ENST00000408444 86 ntBASIC-1.28□□□□□ -2.61
VCX3AQ9NNX9 RNU7-120P-201ENST00000459334 63 ntBASIC-1.28□□□□□ -2.61
VCX3AQ9NNX9 AL117351.2-201ENST00000513571 157 ntBASIC-1.28□□□□□ -2.61
VCX3AQ9NNX9 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-1.28□□□□□ -2.61
VCX3AQ9NNX9 MIR3613-201ENST00000579844 87 ntBASIC-1.28□□□□□ -2.61
VCX3AQ9NNX9 AC103810.7-201ENST00000607821 91 ntBASIC-1.28□□□□□ -2.61
VCX3AQ9NNX9 SNORD45B-201ENST00000364617 72 ntBASIC-1.29□□□□□ -2.62
VCX3AQ9NNX9 SNORD116-18-201ENST00000383961 92 ntBASIC-1.29□□□□□ -2.62
VCX3AQ9NNX9 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.29□□□□□ -2.62
VCX3AQ9NNX9 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.29□□□□□ -2.62
VCX3AQ9NNX9 SNORD90-201ENST00000391145 111 ntBASIC-1.29□□□□□ -2.62
VCX3AQ9NNX9 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.29□□□□□ -2.62
VCX3AQ9NNX9 RNU6-813P-201ENST00000384691 107 ntBASIC-1.3□□□□□ -2.62
VCX3AQ9NNX9 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.3□□□□□ -2.62
VCX3AQ9NNX9 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.3□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 251.5 ms