Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 RNU6-327P-201ENST00000516270 127 ntBASIC-1.22□□□□□ -2.6
RPRD1AQ96P16 MIR3179-1-201ENST00000578940 84 ntBASIC-1.22□□□□□ -2.6
RPRD1AQ96P16 MIR3179-2-201ENST00000579107 84 ntBASIC-1.22□□□□□ -2.6
RPRD1AQ96P16 MIR3179-3-201ENST00000579566 84 ntBASIC-1.22□□□□□ -2.6
RPRD1AQ96P16 MIR3179-4-201ENST00000617599 84 ntBASIC-1.22□□□□□ -2.6
RPRD1AQ96P16 AP001340.1-201ENST00000624405 217 ntBASIC-1.22□□□□□ -2.6
RPRD1AQ96P16 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.23□□□□□ -2.61
RPRD1AQ96P16 MIR513C-201ENST00000401352 84 ntBASIC-1.23□□□□□ -2.61
RPRD1AQ96P16 RNU7-120P-201ENST00000459334 63 ntBASIC-1.23□□□□□ -2.61
RPRD1AQ96P16 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.23□□□□□ -2.61
RPRD1AQ96P16 MIR4503-201ENST00000582187 83 ntBASIC-1.23□□□□□ -2.61
RPRD1AQ96P16 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.23□□□□□ -2.61
RPRD1AQ96P16 RNY4P6-201ENST00000363667 96 ntBASIC-1.24□□□□□ -2.61
RPRD1AQ96P16 AC025521.1-201ENST00000621624 286 ntBASIC-1.24□□□□□ -2.61
RPRD1AQ96P16 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.25□□□□□ -2.61
RPRD1AQ96P16 SNORD22.1-201ENST00000516331 125 ntBASIC-1.25□□□□□ -2.61
RPRD1AQ96P16 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.25□□□□□ -2.61
RPRD1AQ96P16 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.26□□□□□ -2.61
RPRD1AQ96P16 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.26□□□□□ -2.61
RPRD1AQ96P16 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.26□□□□□ -2.61
RPRD1AQ96P16 MIR6854-201ENST00000614935 69 ntBASIC-1.26□□□□□ -2.61
RPRD1AQ96P16 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.27□□□□□ -2.61
RPRD1AQ96P16 FGF7P7-201ENST00000514120 227 ntBASIC-1.27□□□□□ -2.61
RPRD1AQ96P16 RNU6-65P-201ENST00000516332 98 ntBASIC-1.27□□□□□ -2.61
RPRD1AQ96P16 RNU6-719P-201ENST00000516671 104 ntBASIC-1.27□□□□□ -2.61
RPRD1AQ96P16 MIR4499-201ENST00000584834 69 ntBASIC-1.27□□□□□ -2.61
RPRD1AQ96P16 MIR8068-201ENST00000618032 68 ntBASIC-1.27□□□□□ -2.61
RPRD1AQ96P16 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.28□□□□□ -2.61
RPRD1AQ96P16 SNORD116-18-201ENST00000383961 92 ntBASIC-1.28□□□□□ -2.61
RPRD1AQ96P16 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.28□□□□□ -2.61
RPRD1AQ96P16 MIR517B-201ENST00000385102 67 ntBASIC-1.28□□□□□ -2.61
RPRD1AQ96P16 MIR4536-1-201ENST00000583537 88 ntBASIC-1.28□□□□□ -2.61
RPRD1AQ96P16 uc_338.19-201ENST00000616808 99 ntBASIC-1.28□□□□□ -2.61
RPRD1AQ96P16 RNU6-574P-201ENST00000384265 107 ntBASIC-1.29□□□□□ -2.62
RPRD1AQ96P16 RNU6-196P-201ENST00000384315 107 ntBASIC-1.29□□□□□ -2.62
RPRD1AQ96P16 Y_RNA.568-201ENST00000384742 113 ntBASIC-1.29□□□□□ -2.62
RPRD1AQ96P16 MIR577-201ENST00000385196 96 ntBASIC-1.29□□□□□ -2.62
RPRD1AQ96P16 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.29□□□□□ -2.62
RPRD1AQ96P16 RNA5SP470-201ENST00000516463 106 ntBASIC-1.29□□□□□ -2.62
RPRD1AQ96P16 MIR4324-201ENST00000584846 72 ntBASIC-1.29□□□□□ -2.62
RPRD1AQ96P16 U7.2-201ENST00000607576 63 ntBASIC-1.29□□□□□ -2.62
RPRD1AQ96P16 MIR6773-201ENST00000612812 74 ntBASIC-1.29□□□□□ -2.62
RPRD1AQ96P16 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.3□□□□□ -2.62
RPRD1AQ96P16 SNORD50.2-201ENST00000365465 70 ntBASIC-1.3□□□□□ -2.62
RPRD1AQ96P16 MTND3P2-201ENST00000438452 342 ntBASIC-1.3□□□□□ -2.62
RPRD1AQ96P16 RNU7-85P-201ENST00000458851 63 ntBASIC-1.3□□□□□ -2.62
RPRD1AQ96P16 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.3□□□□□ -2.62
RPRD1AQ96P16 AC025166.1-201ENST00000612411 163 ntBASIC-1.3□□□□□ -2.62
RPRD1AQ96P16 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.31□□□□□ -2.62
RPRD1AQ96P16 Y_RNA.489-201ENST00000384410 101 ntBASIC-1.31□□□□□ -2.62
RPRD1AQ96P16 AC022137.1-201ENST00000483735 151 ntBASIC-1.31□□□□□ -2.62
RPRD1AQ96P16 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.31□□□□□ -2.62
RPRD1AQ96P16 MIR378F-201ENST00000578143 78 ntBASIC-1.31□□□□□ -2.62
RPRD1AQ96P16 MIR548X2-201ENST00000579776 100 ntBASIC-1.31□□□□□ -2.62
RPRD1AQ96P16 MIR6738-201ENST00000619620 64 ntBASIC-1.31□□□□□ -2.62
RPRD1AQ96P16 RNU6-592P-201ENST00000411333 103 ntBASIC-1.32□□□□□ -2.62
RPRD1AQ96P16 AP000533.3-201ENST00000447704 118 ntBASIC-1.32□□□□□ -2.62
RPRD1AQ96P16 RNU6-274P-201ENST00000459566 107 ntBASIC-1.32□□□□□ -2.62
RPRD1AQ96P16 RNU6-1045P-201ENST00000516321 107 ntBASIC-1.32□□□□□ -2.62
RPRD1AQ96P16 SNORA63.6-201ENST00000364921 119 ntBASIC-1.33□□□□□ -2.62
RPRD1AQ96P16 SNORD58C-201ENST00000365223 64 ntBASIC-1.33□□□□□ -2.62
RPRD1AQ96P16 RNU6-1011P-201ENST00000384668 107 ntBASIC-1.33□□□□□ -2.62
RPRD1AQ96P16 RNY1P9-201ENST00000532431 109 ntBASIC-1.33□□□□□ -2.62
RPRD1AQ96P16 snoR1.1-201ENST00000628177 80 ntBASIC-1.33□□□□□ -2.62
RPRD1AQ96P16 RNU6-200P-201ENST00000364743 107 ntBASIC-1.34□□□□□ -2.62
RPRD1AQ96P16 RNU6-132P-201ENST00000383863 107 ntBASIC-1.34□□□□□ -2.62
RPRD1AQ96P16 MIRLET7B-201ENST00000385140 83 ntBASIC-1.34□□□□□ -2.62
RPRD1AQ96P16 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.34□□□□□ -2.62
RPRD1AQ96P16 AL513043.2-201ENST00000573941 143 ntBASIC-1.34□□□□□ -2.62
RPRD1AQ96P16 MIR4694-201ENST00000578534 80 ntBASIC-1.34□□□□□ -2.62
RPRD1AQ96P16 SNORD74.6-201ENST00000364796 70 ntBASIC-1.35□□□□□ -2.63
RPRD1AQ96P16 RNU6-431P-201ENST00000383874 107 ntBASIC-1.35□□□□□ -2.63
RPRD1AQ96P16 RNU6-337P-201ENST00000391243 106 ntBASIC-1.35□□□□□ -2.63
RPRD1AQ96P16 RNA5SP266-201ENST00000410273 108 ntBASIC-1.35□□□□□ -2.63
RPRD1AQ96P16 RNU6-394P-201ENST00000410735 107 ntBASIC-1.35□□□□□ -2.63
RPRD1AQ96P16 Y_RNA.659-201ENST00000515994 113 ntBASIC-1.35□□□□□ -2.63
RPRD1AQ96P16 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.35□□□□□ -2.63
RPRD1AQ96P16 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.35□□□□□ -2.63
RPRD1AQ96P16 SNORD115-23-201ENST00000364461 82 ntBASIC-1.36□□□□□ -2.63
RPRD1AQ96P16 RNU6-905P-201ENST00000384434 107 ntBASIC-1.36□□□□□ -2.63
RPRD1AQ96P16 MIR569-201ENST00000385228 96 ntBASIC-1.36□□□□□ -2.63
RPRD1AQ96P16 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.37□□□□□ -2.63
RPRD1AQ96P16 SNORA63.2-201ENST00000362603 126 ntBASIC-1.37□□□□□ -2.63
RPRD1AQ96P16 RNU6-495P-201ENST00000362995 107 ntBASIC-1.37□□□□□ -2.63
RPRD1AQ96P16 RNU6-832P-201ENST00000363319 107 ntBASIC-1.37□□□□□ -2.63
RPRD1AQ96P16 SNORD64-201ENST00000386683 67 ntBASIC-1.37□□□□□ -2.63
RPRD1AQ96P16 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.37□□□□□ -2.63
RPRD1AQ96P16 MIR3140-201ENST00000583685 90 ntBASIC-1.37□□□□□ -2.63
RPRD1AQ96P16 AL627230.5-201ENST00000619807 58 ntBASIC-1.37□□□□□ -2.63
RPRD1AQ96P16 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.38□□□□□ -2.63
RPRD1AQ96P16 AL035470.1-201ENST00000622571 220 ntBASIC-1.38□□□□□ -2.63
RPRD1AQ96P16 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.39□□□□□ -2.63
RPRD1AQ96P16 RNA5SP331-201ENST00000364986 107 ntBASIC-1.39□□□□□ -2.63
RPRD1AQ96P16 RNU6-804P-201ENST00000384286 107 ntBASIC-1.39□□□□□ -2.63
RPRD1AQ96P16 MIR587-201ENST00000384845 96 ntBASIC-1.39□□□□□ -2.63
RPRD1AQ96P16 MIR3064-201ENST00000581130 66 ntBASIC-1.39□□□□□ -2.63
RPRD1AQ96P16 RNY3P2-201ENST00000362918 102 ntBASIC-1.4□□□□□ -2.63
RPRD1AQ96P16 RNU6-990P-201ENST00000364385 104 ntBASIC-1.4□□□□□ -2.63
RPRD1AQ96P16 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.4□□□□□ -2.63
RPRD1AQ96P16 RNU6-10P-201ENST00000384036 107 ntBASIC-1.4□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 274.5 ms