Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNY3P2-201ENST00000362918 102 ntBASIC-0.62□□□□□ -2.51
CCDC54Q8NEL0 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.62□□□□□ -2.51
CCDC54Q8NEL0 RNU6-284P-201ENST00000411105 106 ntBASIC-0.62□□□□□ -2.51
CCDC54Q8NEL0 snoU13.13-201ENST00000458842 104 ntBASIC-0.62□□□□□ -2.51
CCDC54Q8NEL0 RNU7-55P-201ENST00000459426 62 ntBASIC-0.62□□□□□ -2.51
CCDC54Q8NEL0 AC114755.3-201ENST00000481111 251 ntBASIC-0.62□□□□□ -2.51
CCDC54Q8NEL0 AC068339.1-201ENST00000526965 141 ntBASIC-0.62□□□□□ -2.51
CCDC54Q8NEL0 MIR548AZ-201ENST00000616567 95 ntBASIC-0.62□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.63□□□□□ -2.51
CCDC54Q8NEL0 SNORA40-201ENST00000388090 126 ntBASIC-0.63□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.63□□□□□ -2.51
CCDC54Q8NEL0 RNU6-971P-201ENST00000516920 106 ntBASIC-0.63□□□□□ -2.51
CCDC54Q8NEL0 MIR5589-201ENST00000579442 60 ntBASIC-0.63□□□□□ -2.51
CCDC54Q8NEL0 SNORD115-25-201ENST00000362619 82 ntBASIC-0.64□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.64□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.64□□□□□ -2.51
CCDC54Q8NEL0 RNU6-1211P-201ENST00000459179 105 ntBASIC-0.64□□□□□ -2.51
CCDC54Q8NEL0 SNORD33.1-201ENST00000516213 88 ntBASIC-0.64□□□□□ -2.51
CCDC54Q8NEL0 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.64□□□□□ -2.51
CCDC54Q8NEL0 MIR3140-201ENST00000583685 90 ntBASIC-0.64□□□□□ -2.51
CCDC54Q8NEL0 MIR4436A-201ENST00000585278 85 ntBASIC-0.64□□□□□ -2.51
CCDC54Q8NEL0 MIR3914-2-201ENST00000637339 95 ntBASIC-0.64□□□□□ -2.51
CCDC54Q8NEL0 MIR101-1-201ENST00000362265 75 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.464-201ENST00000384282 110 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 RNU6-476P-201ENST00000384726 107 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 MIR216B-201ENST00000390186 82 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 SNORD90-201ENST00000391145 111 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 RNA5SP451-201ENST00000410588 110 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 AL445193.1-201ENST00000441183 141 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 AC096720.1-201ENST00000604441 183 ntBASIC-0.65□□□□□ -2.51
CCDC54Q8NEL0 RNU6-502P-201ENST00000362419 108 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 SNORA24B-201ENST00000384176 131 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 U3.27-201ENST00000391237 200 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 FGF7P7-201ENST00000514120 227 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 MIR4536-1-201ENST00000583537 88 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 MIR4777-201ENST00000583710 86 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 AC103810.7-201ENST00000607821 91 ntBASIC-0.66□□□□□ -2.52
CCDC54Q8NEL0 MIR548A1-201ENST00000385041 97 ntBASIC-0.67□□□□□ -2.52
CCDC54Q8NEL0 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.67□□□□□ -2.52
CCDC54Q8NEL0 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.67□□□□□ -2.52
CCDC54Q8NEL0 SNORD38.3-201ENST00000516599 73 ntBASIC-0.67□□□□□ -2.52
CCDC54Q8NEL0 MIR5009-201ENST00000578736 100 ntBASIC-0.67□□□□□ -2.52
CCDC54Q8NEL0 MIR3064-201ENST00000581130 66 ntBASIC-0.67□□□□□ -2.52
CCDC54Q8NEL0 MIR4802-201ENST00000581881 80 ntBASIC-0.67□□□□□ -2.52
CCDC54Q8NEL0 AL391099.1-201ENST00000624635 187 ntBASIC-0.67□□□□□ -2.52
CCDC54Q8NEL0 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.68□□□□□ -2.52
CCDC54Q8NEL0 snosnR66.1-201ENST00000391095 99 ntBASIC-0.68□□□□□ -2.52
CCDC54Q8NEL0 SNORD4B-201ENST00000459083 72 ntBASIC-0.68□□□□□ -2.52
CCDC54Q8NEL0 RNU6-65P-201ENST00000516332 98 ntBASIC-0.68□□□□□ -2.52
CCDC54Q8NEL0 MIR4493-201ENST00000584016 73 ntBASIC-0.68□□□□□ -2.52
CCDC54Q8NEL0 AC090425.1-201ENST00000610007 140 ntBASIC-0.68□□□□□ -2.52
CCDC54Q8NEL0 AC093726.3-201ENST00000637588 150 ntBASIC-0.68□□□□□ -2.52
CCDC54Q8NEL0 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.69□□□□□ -2.52
CCDC54Q8NEL0 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.69□□□□□ -2.52
CCDC54Q8NEL0 RNY1P5-201ENST00000383890 115 ntBASIC-0.69□□□□□ -2.52
CCDC54Q8NEL0 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.69□□□□□ -2.52
CCDC54Q8NEL0 RNU6-659P-201ENST00000516454 104 ntBASIC-0.69□□□□□ -2.52
CCDC54Q8NEL0 MIR5704-201ENST00000584029 77 ntBASIC-0.69□□□□□ -2.52
CCDC54Q8NEL0 AC012531.4-201ENST00000616509 177 ntBASIC-0.69□□□□□ -2.52
CCDC54Q8NEL0 MIR6851-201ENST00000617060 67 ntBASIC-0.69□□□□□ -2.52
CCDC54Q8NEL0 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.7□□□□□ -2.52
CCDC54Q8NEL0 RNA5SP292-201ENST00000390974 118 ntBASIC-0.7□□□□□ -2.52
CCDC54Q8NEL0 RNU6-795P-201ENST00000516323 103 ntBASIC-0.7□□□□□ -2.52
CCDC54Q8NEL0 SNORA40.17-201ENST00000517256 115 ntBASIC-0.7□□□□□ -2.52
CCDC54Q8NEL0 RNU6-495P-201ENST00000362995 107 ntBASIC-0.71□□□□□ -2.52
CCDC54Q8NEL0 RNU6-813P-201ENST00000384691 107 ntBASIC-0.71□□□□□ -2.52
CCDC54Q8NEL0 RNU6-644P-201ENST00000391155 98 ntBASIC-0.71□□□□□ -2.52
CCDC54Q8NEL0 RNU6-337P-201ENST00000391243 106 ntBASIC-0.71□□□□□ -2.52
CCDC54Q8NEL0 SNORA19.1-201ENST00000410656 129 ntBASIC-0.71□□□□□ -2.52
CCDC54Q8NEL0 MIR4439-201ENST00000583746 80 ntBASIC-0.71□□□□□ -2.52
CCDC54Q8NEL0 MIR8068-201ENST00000618032 68 ntBASIC-0.71□□□□□ -2.52
CCDC54Q8NEL0 SNORA63.2-201ENST00000362603 126 ntBASIC-0.72□□□□□ -2.52
CCDC54Q8NEL0 Y_RNA.343-201ENST00000365354 112 ntBASIC-0.72□□□□□ -2.52
CCDC54Q8NEL0 MIR604-201ENST00000384880 94 ntBASIC-0.72□□□□□ -2.52
CCDC54Q8NEL0 Z95118.1-201ENST00000421372 247 ntBASIC-0.72□□□□□ -2.52
CCDC54Q8NEL0 MIR4636-201ENST00000582271 80 ntBASIC-0.72□□□□□ -2.52
CCDC54Q8NEL0 AC104996.3-201ENST00000590718 94 ntBASIC-0.72□□□□□ -2.52
CCDC54Q8NEL0 SNORD114-14-201ENST00000362723 75 ntBASIC-0.73□□□□□ -2.53
CCDC54Q8NEL0 RNU6-990P-201ENST00000364385 104 ntBASIC-0.73□□□□□ -2.53
CCDC54Q8NEL0 RNU6-973P-201ENST00000364690 107 ntBASIC-0.73□□□□□ -2.53
CCDC54Q8NEL0 RNU6-80P-201ENST00000384195 107 ntBASIC-0.73□□□□□ -2.53
CCDC54Q8NEL0 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.74□□□□□ -2.53
CCDC54Q8NEL0 SNORD45B-201ENST00000364617 72 ntBASIC-0.74□□□□□ -2.53
CCDC54Q8NEL0 RNU6-901P-201ENST00000384593 106 ntBASIC-0.74□□□□□ -2.53
CCDC54Q8NEL0 SNORA3B-201ENST00000391305 131 ntBASIC-0.74□□□□□ -2.53
CCDC54Q8NEL0 RPS29P8-201ENST00000445109 171 ntBASIC-0.74□□□□□ -2.53
CCDC54Q8NEL0 RNU6-758P-201ENST00000516292 89 ntBASIC-0.74□□□□□ -2.53
CCDC54Q8NEL0 MIR6773-201ENST00000612812 74 ntBASIC-0.74□□□□□ -2.53
CCDC54Q8NEL0 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.75□□□□□ -2.53
CCDC54Q8NEL0 SNORD75.1-201ENST00000408373 60 ntBASIC-0.75□□□□□ -2.53
CCDC54Q8NEL0 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.76□□□□□ -2.53
CCDC54Q8NEL0 RNU6-907P-201ENST00000390924 102 ntBASIC-0.76□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms