Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 NAMPTP3-201ENST00000569273 224 ntBASIC0.25□□□□□ -2.37
SHHQ15465 MIR548AE1-201ENST00000583292 70 ntBASIC0.25□□□□□ -2.37
SHHQ15465 MALAT1.1-201ENST00000618249 95 ntBASIC0.25□□□□□ -2.37
SHHQ15465 AL162376.1-201ENST00000624117 175 ntBASIC0.25□□□□□ -2.37
SHHQ15465 RNU6-1229P-201ENST00000364295 107 ntBASIC0.24□□□□□ -2.37
SHHQ15465 SNORD41.1-201ENST00000391000 69 ntBASIC0.24□□□□□ -2.37
SHHQ15465 MIR548L-201ENST00000408303 86 ntBASIC0.24□□□□□ -2.37
SHHQ15465 RNY4P30-201ENST00000410216 95 ntBASIC0.24□□□□□ -2.37
SHHQ15465 Y_RNA.648-201ENST00000459455 110 ntBASIC0.24□□□□□ -2.37
SHHQ15465 AC108740.1-201ENST00000498629 225 ntBASIC0.24□□□□□ -2.37
SHHQ15465 Y_RNA.677-201ENST00000516401 85 ntBASIC0.24□□□□□ -2.37
SHHQ15465 RNU7-13P-201ENST00000516413 62 ntBASIC0.24□□□□□ -2.37
SHHQ15465 RNU5B-6P-201ENST00000516765 68 ntBASIC0.24□□□□□ -2.37
SHHQ15465 Y_RNA.73-201ENST00000362910 113 ntBASIC0.23□□□□□ -2.37
SHHQ15465 Y_RNA.93-201ENST00000363066 109 ntBASIC0.23□□□□□ -2.37
SHHQ15465 MIR106A-201ENST00000384870 81 ntBASIC0.23□□□□□ -2.37
SHHQ15465 RNU6-402P-201ENST00000410678 103 ntBASIC0.23□□□□□ -2.37
SHHQ15465 HMGN2P22-201ENST00000427588 175 ntBASIC0.23□□□□□ -2.37
SHHQ15465 AC093423.1-201ENST00000440817 142 ntBASIC0.23□□□□□ -2.37
SHHQ15465 Y_RNA.705-201ENST00000516862 110 ntBASIC0.23□□□□□ -2.37
SHHQ15465 RNU6-762P-201ENST00000517107 102 ntBASIC0.23□□□□□ -2.37
SHHQ15465 MIR3064-201ENST00000581130 66 ntBASIC0.23□□□□□ -2.37
SHHQ15465 MTRNR2L2-201ENST00000604882 87 ntBASIC0.23□□□□□ -2.37
SHHQ15465 Y_RNA.818-201ENST00000618813 71 ntBASIC0.23□□□□□ -2.37
SHHQ15465 RNU6-664P-201ENST00000362381 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-1125P-201ENST00000363601 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-54P-201ENST00000365563 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-32P-201ENST00000383948 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-13P-201ENST00000384248 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-480P-201ENST00000384332 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-12P-201ENST00000384604 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-41P-201ENST00000384741 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 MIR501-201ENST00000390204 84 ntBASIC0.22□□□□□ -2.37
SHHQ15465 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
SHHQ15465 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.22□□□□□ -2.37
SHHQ15465 snoU13.17-201ENST00000458802 104 ntBASIC0.22□□□□□ -2.37
SHHQ15465 FGF7P7-201ENST00000514120 227 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU7-129P-201ENST00000516128 62 ntBASIC0.22□□□□□ -2.37
SHHQ15465 MIR4473-201ENST00000583731 91 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU1-141P-201ENST00000364623 158 ntBASIC0.21□□□□□ -2.38
SHHQ15465 RNU6-219P-201ENST00000364728 107 ntBASIC0.21□□□□□ -2.38
SHHQ15465 RNY4P3-201ENST00000365254 95 ntBASIC0.21□□□□□ -2.38
SHHQ15465 SNORD101-201ENST00000384027 73 ntBASIC0.21□□□□□ -2.38
SHHQ15465 MIR643-201ENST00000385267 97 ntBASIC0.21□□□□□ -2.38
SHHQ15465 MIR760-201ENST00000390220 80 ntBASIC0.21□□□□□ -2.38
SHHQ15465 RNU6-466P-201ENST00000391224 103 ntBASIC0.21□□□□□ -2.38
SHHQ15465 Y_RNA.593-201ENST00000410292 98 ntBASIC0.21□□□□□ -2.38
SHHQ15465 snoU13.19-201ENST00000459148 104 ntBASIC0.21□□□□□ -2.38
SHHQ15465 AC097510.1-201ENST00000510945 133 ntBASIC0.21□□□□□ -2.38
SHHQ15465 SNORA18.5-201ENST00000516616 101 ntBASIC0.21□□□□□ -2.38
SHHQ15465 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
SHHQ15465 MIR4536-1-201ENST00000583537 88 ntBASIC0.21□□□□□ -2.38
SHHQ15465 RNU7-10P-201ENST00000607194 63 ntBASIC0.21□□□□□ -2.38
SHHQ15465 Y_RNA.10-201ENST00000362371 110 ntBASIC0.2□□□□□ -2.38
SHHQ15465 Y_RNA.544-201ENST00000384650 113 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR451A-201ENST00000385059 72 ntBASIC0.2□□□□□ -2.38
SHHQ15465 RNU6-127P-201ENST00000390897 107 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR548H2-201ENST00000408874 88 ntBASIC0.2□□□□□ -2.38
SHHQ15465 Y_RNA.596-201ENST00000410462 109 ntBASIC0.2□□□□□ -2.38
SHHQ15465 RNU6-519P-201ENST00000410590 108 ntBASIC0.2□□□□□ -2.38
SHHQ15465 SNORD42B-201ENST00000458893 67 ntBASIC0.2□□□□□ -2.38
SHHQ15465 SNORA40.13-201ENST00000516379 120 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR5582-201ENST00000579697 68 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR4439-201ENST00000583746 80 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR3925-201ENST00000584674 77 ntBASIC0.2□□□□□ -2.38
SHHQ15465 AC104996.3-201ENST00000590718 94 ntBASIC0.2□□□□□ -2.38
SHHQ15465 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.2□□□□□ -2.38
SHHQ15465 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.2□□□□□ -2.38
SHHQ15465 RNU6-1113P-201ENST00000384348 107 ntBASIC0.19□□□□□ -2.38
SHHQ15465 RNU6-972P-201ENST00000391208 107 ntBASIC0.19□□□□□ -2.38
SHHQ15465 RNU2-59P-201ENST00000410482 191 ntBASIC0.19□□□□□ -2.38
SHHQ15465 RNA5SP25-201ENST00000410815 110 ntBASIC0.19□□□□□ -2.38
SHHQ15465 AC073261.1-201ENST00000429409 121 ntBASIC0.19□□□□□ -2.38
SHHQ15465 RNU6-65P-201ENST00000516332 98 ntBASIC0.19□□□□□ -2.38
SHHQ15465 MIR4668-201ENST00000582284 70 ntBASIC0.19□□□□□ -2.38
SHHQ15465 MIR582-201ENST00000365731 98 ntBASIC0.18□□□□□ -2.38
SHHQ15465 RNU6V-201ENST00000384105 107 ntBASIC0.18□□□□□ -2.38
SHHQ15465 MIR617-201ENST00000385030 97 ntBASIC0.18□□□□□ -2.38
SHHQ15465 Y_RNA.620-201ENST00000411009 88 ntBASIC0.18□□□□□ -2.38
SHHQ15465 SNORD71-201ENST00000411292 86 ntBASIC0.18□□□□□ -2.38
SHHQ15465 YWHAEP2-201ENST00000580066 112 ntBASIC0.18□□□□□ -2.38
SHHQ15465 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.18□□□□□ -2.38
SHHQ15465 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.18□□□□□ -2.38
SHHQ15465 Y_RNA.17-201ENST00000362433 111 ntBASIC0.17□□□□□ -2.38
SHHQ15465 SNORD116-10-201ENST00000363791 102 ntBASIC0.17□□□□□ -2.38
SHHQ15465 Y_RNA.185-201ENST00000363894 100 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-497P-201ENST00000365316 104 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-811P-201ENST00000384069 107 ntBASIC0.17□□□□□ -2.38
SHHQ15465 SNORA24B-201ENST00000384176 131 ntBASIC0.17□□□□□ -2.38
SHHQ15465 Y_RNA.491-201ENST00000384417 107 ntBASIC0.17□□□□□ -2.38
SHHQ15465 SNORD110-201ENST00000408189 75 ntBASIC0.17□□□□□ -2.38
SHHQ15465 MIR1295A-201ENST00000408463 79 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-158P-201ENST00000517104 100 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-844P-201ENST00000517175 102 ntBASIC0.17□□□□□ -2.38
SHHQ15465 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-1051P-201ENST00000365471 102 ntBASIC0.16□□□□□ -2.38
SHHQ15465 Y_RNA.558-201ENST00000384685 113 ntBASIC0.16□□□□□ -2.38
SHHQ15465 AC006210.1-201ENST00000424882 111 ntBASIC0.16□□□□□ -2.38
SHHQ15465 RNU6-135P-201ENST00000516769 101 ntBASIC0.16□□□□□ -2.38
SHHQ15465 SNORA40.17-201ENST00000517256 115 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 194.4 ms